Wall clock time and date at job start Tue Mar 31 2020 05:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21549 * 119.99841 * 359.97438 * 5 4 2 7 7 C 1.47854 * 119.99881 * 180.02562 * 5 4 2 8 8 C 1.39609 * 119.97457 * 359.97438 * 7 5 4 9 9 C 1.38086 * 119.68968 * 179.97438 * 8 7 5 10 10 C 1.37851 * 120.10975 * 0.02562 * 9 8 7 11 11 C 1.39029 * 121.04059 * 359.97438 * 10 9 8 12 12 C 1.39130 * 119.08660 * 359.74924 * 11 10 9 13 13 N 1.39586 * 110.20949 * 180.02562 * 11 10 9 14 14 C 1.34354 * 112.24890 * 359.97438 * 13 11 10 15 15 O 1.21290 * 126.42127 * 180.02562 * 14 13 11 16 16 C 1.51194 * 132.65627 * 179.97438 * 10 9 8 17 17 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 18 18 C 1.53486 * 114.20850 * 60.00280 * 17 2 1 19 19 N 1.47064 * 87.98715 * 87.51930 * 18 17 2 20 20 C 1.36944 * 136.05968 * 207.08932 * 19 18 17 21 21 H 1.08003 * 119.99220 * 7.55219 * 20 19 18 22 22 C 1.38804 * 120.00270 * 187.55676 * 20 19 18 23 23 N 1.31616 * 120.00491 * 174.37770 * 22 20 19 24 24 Si 1.86810 * 119.99801 * 354.37977 * 22 20 19 25 25 H 1.48499 * 109.46858 * 174.95062 * 24 22 20 26 26 H 1.48498 * 109.46907 * 294.94544 * 24 22 20 27 27 H 1.48495 * 109.47036 * 54.94600 * 24 22 20 28 28 C 1.47066 * 87.88390 * 27.34185 * 19 18 17 29 29 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 32 32 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 33 33 H 1.08011 * 120.15735 * 359.97438 * 8 7 5 34 34 H 1.08002 * 119.94962 * 180.02562 * 9 8 7 35 35 H 1.08005 * 119.98705 * 180.27220 * 12 11 10 36 36 H 0.97000 * 123.87278 * 179.97438 * 13 11 10 37 37 H 1.08998 * 110.50255 * 298.64974 * 16 10 9 38 38 H 1.08994 * 110.50423 * 61.35085 * 16 10 9 39 39 H 1.08998 * 113.41116 * 286.79710 * 17 2 1 40 40 H 1.09003 * 113.46770 * 332.73878 * 18 17 2 41 41 H 1.09004 * 113.52153 * 202.31032 * 18 17 2 42 42 H 0.97003 * 119.99848 * 354.81683 * 23 22 20 43 43 H 1.08996 * 113.46631 * 87.44126 * 28 19 18 44 44 H 1.09001 * 113.46561 * 217.88042 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8584 1.1611 2.4116 7 6 2.6404 -0.7152 3.5642 8 6 2.9723 -2.0698 3.5009 9 6 3.4330 -2.7147 4.6316 10 6 3.5638 -2.0235 5.8171 11 6 3.2384 -0.6743 5.8999 12 6 2.7792 -0.0183 4.7622 13 7 3.4557 -0.2046 7.1963 14 6 3.9157 -1.1654 8.0151 15 8 4.1892 -1.0401 9.1901 16 6 4.0282 -2.4335 7.1963 17 6 2.0399 -0.7213 -1.2493 18 6 1.5898 -0.0846 -2.5714 19 7 2.7723 0.7864 -2.4946 20 6 3.1105 2.0324 -2.9511 21 1 2.3637 2.6574 -3.4180 22 6 4.4131 2.4918 -2.8140 23 7 4.7655 3.6412 -3.3498 24 14 5.6662 1.4788 -1.8688 25 1 7.0008 2.1220 -1.9706 26 1 5.2629 1.3987 -0.4418 27 1 5.7308 0.1107 -2.4425 28 6 3.4340 -0.2723 -1.7172 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6318 1.1526 33 1 2.8691 -2.6109 2.5717 34 1 3.6913 -3.7625 4.5873 35 1 2.5265 1.0308 4.8090 36 1 3.2931 0.7104 7.4741 37 1 3.3794 -3.2095 7.6025 38 1 5.0622 -2.7768 7.1646 39 1 1.9117 -1.8029 -1.2076 40 1 0.6466 0.4562 -2.4938 41 1 1.6122 -0.7736 -3.4158 42 1 4.1374 4.1310 -3.9035 43 1 3.9431 -1.0113 -2.3358 44 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969735932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:05 Heat of formation + Delta-G solvation = 30.650491 kcal Electronic energy + Delta-G solvation = -27423.341073 eV Core-core repulsion = 23535.983974 eV Total energy + Delta-G solvation = -3887.357099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85850 -40.16675 -38.96564 -38.19875 -35.95071 -34.93205 -32.77828 -32.39965 -30.86507 -29.95094 -28.51535 -27.82458 -25.46578 -24.12101 -23.13925 -22.92704 -21.85072 -21.29357 -20.34418 -19.27893 -18.38069 -17.51618 -17.26125 -16.84261 -16.47027 -16.31118 -15.57923 -15.22628 -14.96565 -14.84692 -14.43650 -14.37475 -14.02671 -13.85893 -13.53700 -13.49749 -13.24401 -13.15943 -12.91179 -12.57730 -12.26568 -12.03400 -11.56329 -11.49651 -11.29940 -11.23144 -10.99682 -10.68779 -10.61939 -10.31735 -10.24931 -9.87929 -9.33477 -9.21738 -9.12166 -8.95432 -8.85731 -8.51843 -7.15204 -6.26827 -3.21107 0.40481 0.79818 1.95821 2.50678 2.74165 3.13889 3.40318 3.45489 3.56956 3.63467 3.65163 3.88859 4.34210 4.52896 4.61473 4.70645 4.74342 4.76401 4.86576 4.89428 4.93660 5.04872 5.22824 5.38503 5.45467 5.56484 5.58744 5.66123 5.82034 5.84101 5.89900 5.90108 6.03104 6.06595 6.18218 6.24677 6.28448 6.30018 6.40060 6.48004 6.49667 6.60484 6.87364 7.13065 7.50389 7.54037 8.23679 8.26272 8.99838 9.52279 10.37987 11.23118 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.002861 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.534087 B = 9784.612003 C =10459.842032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.104 0.896 4 N -0.714 5.714 5 C 0.555 3.445 6 O -0.527 6.527 7 C -0.091 4.091 8 C -0.104 4.104 9 C -0.072 4.072 10 C -0.123 4.123 11 C 0.132 3.868 12 C -0.078 4.078 13 N -0.658 5.658 14 C 0.529 3.471 15 O -0.506 6.506 16 C -0.116 4.116 17 C -0.142 4.142 18 C 0.130 3.870 19 N -0.627 5.627 20 C -0.302 4.302 21 H 0.083 0.917 22 C -0.024 4.024 23 N -0.935 5.935 24 Si 1.069 2.931 25 H -0.296 1.296 26 H -0.293 1.293 27 H -0.288 1.288 28 C 0.099 3.901 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.396 0.604 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.416 0.584 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.040 0.960 42 H 0.261 0.739 43 H 0.046 0.954 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 -18.263 17.768 26.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.062 3.938 3 H 0.122 0.878 4 N -0.365 5.365 5 C 0.341 3.659 6 O -0.404 6.404 7 C -0.095 4.095 8 C -0.124 4.124 9 C -0.091 4.091 10 C -0.126 4.126 11 C 0.035 3.965 12 C -0.100 4.100 13 N -0.301 5.301 14 C 0.317 3.683 15 O -0.380 6.380 16 C -0.155 4.155 17 C -0.162 4.162 18 C 0.003 3.997 19 N -0.356 5.356 20 C -0.428 4.428 21 H 0.100 0.900 22 C -0.223 4.223 23 N -0.577 5.577 24 Si 0.901 3.099 25 H -0.223 1.223 26 H -0.221 1.221 27 H -0.215 1.215 28 C -0.026 4.026 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.231 0.769 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.254 0.746 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.151 -17.164 18.943 25.897 hybrid contribution -1.506 -0.005 -0.719 1.669 sum -5.656 -17.169 18.224 25.669 Atomic orbital electron populations 1.22110 0.95240 1.01517 1.02634 1.20695 0.93513 0.98235 0.81355 0.87755 1.45997 1.66978 1.13833 1.09726 1.18119 0.78191 0.86564 0.83051 1.90819 1.49580 1.15229 1.84792 1.19709 1.02012 0.94123 0.93685 1.21258 0.98996 0.93361 0.98787 1.20189 0.98537 1.00146 0.90199 1.20004 1.03620 0.93464 0.95560 1.17963 0.99759 0.93473 0.85276 1.20433 0.99454 1.00950 0.89128 1.43746 1.63299 1.14346 1.08746 1.20585 0.75359 0.86269 0.86103 1.90836 1.49519 1.83663 1.13989 1.21113 1.05403 0.97653 0.91357 1.23207 0.99523 0.98236 0.95224 1.22358 0.92744 0.91898 0.92656 1.46035 1.13222 1.12626 1.63699 1.20138 0.96385 0.88590 1.37734 0.89952 1.25672 0.96093 0.99161 1.01377 1.70908 1.37609 1.15097 1.34100 0.83741 0.75972 0.74526 0.75621 1.22297 1.22079 1.21506 1.22825 0.94023 0.91276 0.94490 0.91066 0.92847 0.92451 0.76892 0.84590 0.84497 0.83991 0.74563 0.85587 0.85535 0.90408 0.93214 0.94217 0.92939 0.93685 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.29 37.16 0.35 -1.75 16 2 C 0.17 2.58 2.43 -67.93 -0.16 2.41 16 3 H 0.10 2.17 7.36 -51.93 -0.38 1.78 16 4 N -0.71 -9.07 5.03 -54.74 -0.28 -9.34 16 5 C 0.55 7.94 7.74 -12.32 -0.10 7.85 16 6 O -0.53 -9.85 15.99 5.32 0.09 -9.77 16 7 C -0.09 -0.99 5.86 -105.06 -0.62 -1.61 16 8 C -0.10 -0.79 9.55 -39.13 -0.37 -1.16 16 9 C -0.07 -0.45 10.02 -39.78 -0.40 -0.85 16 10 C -0.12 -0.89 6.35 -104.23 -0.66 -1.55 16 11 C 0.13 1.17 7.10 -83.70 -0.59 0.57 16 12 C -0.08 -0.82 9.62 -38.86 -0.37 -1.19 16 13 N -0.66 -5.41 5.88 -9.72 -0.06 -5.47 16 14 C 0.53 4.79 8.71 -10.85 -0.09 4.70 16 15 O -0.51 -6.34 18.03 5.55 0.10 -6.24 16 16 C -0.12 -0.68 6.88 -28.47 -0.20 -0.88 16 17 C -0.14 -2.19 3.73 -89.97 -0.34 -2.53 16 18 C 0.13 2.39 8.08 -8.52 -0.07 2.32 16 19 N -0.63 -15.06 3.49 -184.63 -0.64 -15.71 16 20 C -0.30 -8.73 11.08 -15.06 -0.17 -8.89 16 21 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 22 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 23 N -0.93 -29.97 13.70 55.49 0.76 -29.21 16 24 Si 1.07 27.24 25.16 -169.99 -4.28 22.96 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.29 -7.22 6.51 56.52 0.37 -6.85 16 27 H -0.29 -6.72 6.20 56.52 0.35 -6.37 16 28 C 0.10 2.00 5.24 -8.38 -0.04 1.96 16 29 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.40 3.55 6.62 -40.82 -0.27 3.28 16 33 H 0.14 0.70 6.39 -52.48 -0.34 0.36 16 34 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.14 1.56 7.63 -52.48 -0.40 1.16 16 36 H 0.42 2.83 8.96 -40.82 -0.37 2.46 16 37 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.88 6.43 -51.93 -0.33 0.55 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 43 H 0.05 0.88 7.66 -51.93 -0.40 0.48 16 44 H 0.05 1.14 4.71 -51.93 -0.24 0.90 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -37.67 360.22 -8.50 -46.17 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.69 Total: 2.59 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.93 Total: -1.42 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.22 Total: -59.73 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.19 Total: -16.01 kcal Atomic # 14 Polarization: 27.24 SS G_CDS: -4.28 Total: 22.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.67 -8.50 -46.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969735932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.822 kcal (2) G-P(sol) polarization free energy of solvation -37.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds