Wall clock time and date at job start Tue Mar 31 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30059 * 124.94420 * 2 1 4 4 C 1.35773 * 109.43767 * 179.97438 * 3 2 1 5 5 C 1.39485 * 133.74396 * 180.30716 * 4 3 2 6 6 C 1.39668 * 118.05243 * 180.17360 * 5 4 3 7 7 C 1.47692 * 120.38466 * 179.73309 * 6 5 4 8 8 O 1.21579 * 119.99957 * 359.73119 * 7 6 5 9 9 N 1.34777 * 120.00318 * 179.72095 * 7 6 5 10 10 C 1.46505 * 120.00207 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46918 * 35.00652 * 10 9 7 12 12 C 1.52995 * 109.46965 * 275.00529 * 10 9 7 13 13 C 1.53002 * 109.46769 * 155.00392 * 10 9 7 14 14 C 1.53496 * 114.20179 * 180.02562 * 13 10 9 15 15 N 1.47070 * 87.98352 * 87.52002 * 14 13 10 16 16 C 1.36935 * 136.05550 * 207.07944 * 15 14 13 17 17 H 1.08005 * 120.00172 * 6.50069 * 16 15 14 18 18 C 1.38815 * 119.99990 * 186.49806 * 16 15 14 19 19 N 1.31619 * 119.99663 * 6.42579 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 186.42252 * 18 16 15 21 21 H 1.48495 * 109.47340 * 265.02201 * 20 18 16 22 22 H 1.48498 * 109.46951 * 25.02385 * 20 18 16 23 23 H 1.48498 * 109.46744 * 145.01993 * 20 18 16 24 24 C 1.47064 * 87.88277 * 27.34197 * 15 14 13 25 25 C 1.39982 * 119.23567 * 359.46403 * 6 5 4 26 26 N 1.31388 * 121.15698 * 0.30006 * 25 6 5 27 27 C 1.32544 * 121.79368 * 359.97433 * 26 25 6 28 28 N 1.36167 * 124.94745 * 179.97438 * 2 1 3 29 29 H 0.97008 * 126.23685 * 0.02562 * 28 2 1 30 30 H 1.09004 * 109.46585 * 89.98369 * 1 2 3 31 31 H 1.09001 * 109.46953 * 209.97616 * 1 2 3 32 32 H 1.08993 * 109.47126 * 329.98160 * 1 2 3 33 33 H 1.08003 * 120.97405 * 359.93415 * 5 4 3 34 34 H 0.96997 * 119.99864 * 0.02562 * 9 7 6 35 35 H 1.09008 * 109.46757 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47403 * 299.99826 * 12 10 9 37 37 H 1.09001 * 109.47570 * 60.00269 * 12 10 9 38 38 H 1.08996 * 113.41116 * 46.80608 * 13 10 9 39 39 H 1.09004 * 113.46865 * 332.74440 * 14 13 10 40 40 H 1.08993 * 113.51976 * 202.30849 * 14 13 10 41 41 H 0.97005 * 119.99413 * 179.97438 * 19 18 16 42 42 H 1.09000 * 113.46743 * 87.44096 * 24 15 14 43 43 H 1.08999 * 113.46191 * 217.87327 * 24 15 14 44 44 H 1.07994 * 119.42521 * 180.27273 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2520 1.0661 0.0000 4 6 3.5603 0.7031 0.0006 5 6 4.7590 1.4163 0.0062 6 6 5.9537 0.6928 0.0011 7 6 7.2527 1.3957 0.0008 8 8 7.2862 2.6110 0.0000 9 7 8.4008 0.6899 0.0015 10 6 9.6893 1.3872 0.0017 11 1 9.6080 2.3006 0.5909 12 6 10.0785 1.7400 -1.4352 13 6 10.7598 0.4802 0.6120 14 6 12.1597 1.1075 0.6664 15 7 11.7935 1.6851 1.9685 16 6 12.1621 2.7833 2.6986 17 1 12.8241 3.5204 2.2686 18 6 11.6849 2.9493 3.9916 19 7 10.9825 1.9932 4.5615 20 14 12.0399 4.5294 4.9225 21 1 13.2453 4.3447 5.7698 22 1 12.2786 5.6307 3.9553 23 1 10.8777 4.8690 5.7823 24 6 10.8621 0.5606 2.1440 25 6 5.9058 -0.7062 0.0020 26 7 4.7589 -1.3471 0.0017 27 6 3.5997 -0.7043 0.0010 28 7 2.2870 -1.1161 0.0005 29 1 1.9741 -2.0344 0.0006 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5141 33 1 4.7632 2.4963 0.0105 34 1 8.3741 -0.2797 0.0018 35 1 11.0370 2.2592 -1.4350 36 1 10.1598 0.8266 -2.0244 37 1 9.3159 2.3861 -1.8700 38 1 10.7404 -0.5368 0.2204 39 1 12.3305 1.8557 -0.1077 40 1 12.9631 0.3735 0.7277 41 1 10.6493 2.1091 5.4652 42 1 11.3229 -0.3183 2.5950 43 1 9.9276 0.8428 2.6288 44 1 6.8277 -1.2686 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969820902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:05 Heat of formation + Delta-G solvation = 108.158835 kcal Electronic energy + Delta-G solvation = -27282.566304 eV Core-core repulsion = 23430.862970 eV Total energy + Delta-G solvation = -3851.703334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.70113 -40.01417 -38.64994 -37.79708 -34.70773 -33.93313 -32.33838 -31.91005 -31.62200 -30.20686 -28.22185 -27.56936 -25.00965 -24.22943 -23.66862 -23.23700 -21.90906 -21.34631 -20.42839 -19.07697 -18.70913 -17.79182 -16.90740 -16.54560 -16.27229 -16.23811 -15.71118 -14.81358 -14.72712 -14.33023 -13.99266 -13.91499 -13.79404 -13.72099 -13.38741 -13.20913 -13.05531 -12.94498 -12.50402 -12.39539 -11.98177 -11.76772 -11.43021 -11.37373 -11.33265 -10.89111 -10.75916 -10.68165 -10.30476 -10.02572 -9.81437 -9.75597 -9.41364 -9.17938 -9.15151 -8.81979 -8.75098 -8.65169 -6.82972 -5.73168 -3.03567 0.48596 0.61290 2.11812 2.35883 2.94790 3.20403 3.44075 3.49771 3.51972 3.67202 3.75350 3.99974 4.30913 4.51911 4.61858 4.63673 4.72530 4.83547 4.93118 5.08710 5.24515 5.29014 5.32019 5.37134 5.49728 5.57902 5.77831 5.81603 5.85512 5.91605 6.07377 6.13538 6.18662 6.32967 6.47866 6.57508 6.67265 6.70848 6.72832 6.89880 7.22439 7.32139 7.34915 7.49591 7.58273 7.73938 8.02087 8.42576 9.08684 9.75872 10.69520 11.45487 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016084 B = 0.002684 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.475525 B =10430.991871 C =11240.922473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.293 3.707 3 N -0.475 5.475 4 C -0.004 4.004 5 C 0.045 3.955 6 C -0.191 4.191 7 C 0.567 3.433 8 O -0.529 6.529 9 N -0.712 5.712 10 C 0.171 3.829 11 H 0.104 0.896 12 C -0.158 4.158 13 C -0.157 4.157 14 C 0.125 3.875 15 N -0.608 5.608 16 C -0.218 4.218 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.279 1.279 23 H -0.290 1.290 24 C 0.166 3.834 25 C 0.174 3.826 26 N -0.485 5.485 27 C 0.255 3.745 28 N -0.586 5.586 29 H 0.428 0.572 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.157 0.843 34 H 0.394 0.606 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.253 0.747 42 H 0.028 0.972 43 H 0.062 0.938 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.881 -10.629 -13.057 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.025 3.975 3 N -0.196 5.196 4 C -0.124 4.124 5 C 0.018 3.982 6 C -0.199 4.199 7 C 0.352 3.648 8 O -0.406 6.406 9 N -0.362 5.362 10 C 0.068 3.932 11 H 0.122 0.878 12 C -0.216 4.216 13 C -0.177 4.177 14 C -0.001 4.001 15 N -0.334 5.334 16 C -0.345 4.345 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.205 1.205 23 H -0.216 1.216 24 C 0.040 3.960 25 C 0.005 3.995 26 N -0.198 5.198 27 C 0.019 3.981 28 N -0.201 5.201 29 H 0.268 0.732 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.174 0.826 34 H 0.229 0.771 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -19.166 -9.507 -12.757 24.909 hybrid contribution 0.493 -0.362 0.779 0.991 sum -18.673 -9.869 -11.978 24.281 Atomic orbital electron populations 1.20438 0.83310 1.05166 1.04625 1.23743 0.95856 0.80275 0.97594 1.70467 1.00339 1.27454 1.21352 1.19559 0.92799 0.91587 1.08455 1.20878 0.87354 1.01445 0.88549 1.20767 0.94594 0.94875 1.09649 1.17729 0.83162 0.87047 0.76848 1.90816 1.87226 1.13157 1.49403 1.45959 1.05882 1.09846 1.74554 1.20653 0.79869 0.96558 0.96166 0.87756 1.22133 1.02039 1.01122 0.96296 1.23330 0.96456 0.97384 1.00555 1.22418 0.92671 0.94860 0.90192 1.45727 1.46063 1.23493 1.18091 1.18922 1.25469 0.95677 0.94449 0.90159 1.24803 1.00962 0.98145 0.96426 1.69842 1.40608 1.31882 1.14183 0.86131 0.77232 0.82847 0.79766 1.21731 1.20457 1.21615 1.22039 0.95054 0.89882 0.88998 1.22750 0.94382 0.90478 0.91845 1.66383 0.95777 1.40534 1.17082 1.19060 0.86144 0.91253 1.01678 1.42700 1.03663 1.10606 1.63107 0.73213 0.88947 0.89796 0.88053 0.82550 0.77134 0.91199 0.93047 0.92669 0.91113 0.93771 0.94900 0.93739 0.95389 0.92007 0.81164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.29 2.52 8.08 -154.74 -1.25 1.27 16 3 N -0.48 -5.97 11.29 -8.21 -0.09 -6.07 16 4 C 0.00 -0.06 7.23 -84.69 -0.61 -0.67 16 5 C 0.05 0.64 9.75 -38.58 -0.38 0.27 16 6 C -0.19 -2.60 5.89 -104.85 -0.62 -3.22 16 7 C 0.57 9.14 7.74 -12.40 -0.10 9.04 16 8 O -0.53 -10.69 16.06 5.30 0.09 -10.60 16 9 N -0.71 -10.24 5.03 -54.79 -0.28 -10.52 16 10 C 0.17 2.91 2.43 -67.93 -0.16 2.75 16 11 H 0.10 2.32 7.36 -51.93 -0.38 1.94 16 12 C -0.16 -2.30 9.29 37.16 0.35 -1.96 16 13 C -0.16 -2.73 3.73 -89.97 -0.34 -3.06 16 14 C 0.13 2.48 8.08 -8.51 -0.07 2.41 16 15 N -0.61 -15.50 3.57 -184.62 -0.66 -16.16 16 16 C -0.22 -6.19 10.73 -15.06 -0.16 -6.35 16 17 H 0.08 2.21 7.84 -52.48 -0.41 1.79 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 19 N -0.92 -27.86 11.81 55.49 0.66 -27.20 16 20 Si 0.91 22.83 29.56 -169.99 -5.02 17.80 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 C 0.17 3.82 6.77 -8.38 -0.06 3.76 16 25 C 0.17 2.01 10.69 -17.09 -0.18 1.83 16 26 N -0.49 -5.95 10.36 -11.96 -0.12 -6.07 16 27 C 0.25 3.11 8.45 -155.64 -1.31 1.79 16 28 N -0.59 -4.94 6.20 -9.44 -0.06 -4.99 16 29 H 0.43 2.09 8.96 -40.82 -0.37 1.72 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.16 2.24 7.72 -52.48 -0.41 1.83 16 34 H 0.39 4.29 6.64 -40.82 -0.27 4.02 16 35 H 0.07 1.03 6.50 -51.92 -0.34 0.69 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.04 0.83 6.43 -51.93 -0.33 0.49 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 1.60 7.56 -51.93 -0.39 1.20 16 44 H 0.17 1.41 6.39 -52.49 -0.34 1.07 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -37.55 368.90 -10.30 -47.84 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.75 Total: 2.73 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -4.61 Total: 7.68 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -0.55 Total: -71.01 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.55 -10.30 -47.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969820902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.003 kcal (2) G-P(sol) polarization free energy of solvation -37.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds