Wall clock time and date at job start Tue Mar 31 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30716 * 126.27577 * 2 1 4 4 N 1.28649 * 110.34518 * 179.97438 * 3 2 1 5 5 C 1.32185 * 109.56479 * 0.02562 * 4 3 2 6 6 C 1.41054 * 133.25847 * 179.97438 * 5 4 3 7 7 C 1.35641 * 119.40348 * 179.97438 * 6 5 4 8 8 C 1.41820 * 119.59810 * 0.02562 * 7 6 5 9 9 C 1.47599 * 119.98030 * 179.97438 * 8 7 6 10 10 O 1.21582 * 120.00087 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99921 * 0.02562 * 9 8 7 12 12 C 1.46494 * 119.99891 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47269 * 324.99881 * 12 11 9 14 14 C 1.53003 * 109.47388 * 84.99712 * 12 11 9 15 15 C 1.52997 * 109.47346 * 204.99515 * 12 11 9 16 16 C 1.53493 * 114.21093 * 180.02562 * 15 12 11 17 17 N 1.47063 * 87.98878 * 87.52231 * 16 15 12 18 18 C 1.36937 * 136.06294 * 207.09193 * 17 16 15 19 19 H 1.08002 * 119.99154 * 8.42658 * 18 17 16 20 20 C 1.38809 * 120.00444 * 188.43562 * 18 17 16 21 21 N 1.31615 * 120.00184 * 174.84707 * 20 18 17 22 22 Si 1.86804 * 119.99817 * 354.84535 * 20 18 17 23 23 H 1.48500 * 109.46921 * 174.85685 * 22 20 18 24 24 H 1.48499 * 109.46931 * 294.85807 * 22 20 18 25 25 H 1.48497 * 109.47301 * 54.85270 * 22 20 18 26 26 C 1.47077 * 87.88326 * 27.34112 * 17 16 15 27 27 C 1.36497 * 120.03761 * 0.27122 * 8 7 6 28 28 N 1.35843 * 120.38527 * 359.44735 * 27 8 7 29 29 H 1.08999 * 109.47170 * 270.00247 * 1 2 3 30 30 H 1.09007 * 109.46707 * 30.00180 * 1 2 3 31 31 H 1.08996 * 109.47019 * 150.00000 * 1 2 3 32 32 H 1.07994 * 120.29719 * 0.02562 * 6 5 4 33 33 H 1.07992 * 120.20143 * 180.02562 * 7 6 5 34 34 H 0.96998 * 120.00081 * 359.97438 * 11 9 8 35 35 H 1.08997 * 109.46839 * 300.00194 * 14 12 11 36 36 H 1.09001 * 109.47234 * 60.00090 * 14 12 11 37 37 H 1.09001 * 109.47114 * 180.02562 * 14 12 11 38 38 H 1.09006 * 113.40935 * 46.79695 * 15 12 11 39 39 H 1.08997 * 113.46804 * 332.73869 * 16 15 12 40 40 H 1.09009 * 113.52158 * 202.31079 * 16 15 12 41 41 H 0.97003 * 120.00032 * 357.02883 * 21 20 18 42 42 H 1.09000 * 113.46243 * 87.44347 * 26 17 16 43 43 H 1.08997 * 113.46338 * 217.88020 * 26 17 16 44 44 H 1.08000 * 119.80424 * 179.70630 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0538 0.0000 4 7 3.5175 0.7007 0.0005 5 6 3.6013 -0.6185 0.0004 6 6 4.6878 -1.5181 0.0003 7 6 4.4471 -2.8530 0.0006 8 6 3.1092 -3.3235 0.0005 9 6 2.8376 -4.7743 0.0003 10 8 1.6908 -5.1781 0.0007 11 7 3.8609 -5.6514 0.0007 12 6 3.5914 -7.0913 0.0011 13 1 2.6970 -7.2934 0.5904 14 6 3.3741 -7.5700 -1.4358 15 6 4.7824 -7.8331 0.6110 16 6 4.6142 -9.3578 0.6644 17 7 5.1729 -9.4151 -0.6947 18 6 5.0679 -10.2574 -1.7693 19 1 4.3400 -11.0552 -1.7608 20 6 5.8970 -10.0859 -2.8693 21 7 5.8671 -10.9544 -3.8577 22 14 7.0552 -8.6223 -2.9467 23 1 7.9139 -8.7339 -4.1530 24 1 6.2636 -7.3678 -3.0168 25 1 7.9087 -8.6016 -1.7316 26 6 5.8991 -8.1730 -0.3898 27 6 2.0726 -2.4355 -0.0056 28 7 2.3131 -1.0985 -0.0002 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 5.7021 -1.1473 0.0008 33 1 5.2692 -3.5532 0.0010 34 1 4.7759 -5.3293 0.0008 35 1 2.5256 -7.0416 -1.8704 36 1 4.2685 -7.3680 -2.0252 37 1 3.1731 -8.6413 -1.4355 38 1 5.1388 -7.3896 1.5408 39 1 3.5738 -9.6780 0.7200 40 1 5.2436 -9.8390 1.4131 41 1 5.2974 -11.7373 -3.7984 42 1 6.8677 -8.3411 0.0810 43 1 5.9532 -7.4839 -1.2326 44 1 1.0553 -2.7980 -0.0104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970003921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:01 Heat of formation + Delta-G solvation = 146.094026 kcal Electronic energy + Delta-G solvation = -27763.729239 eV Core-core repulsion = 23913.670898 eV Total energy + Delta-G solvation = -3850.058341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.99220 -40.50153 -39.22994 -37.92593 -35.13539 -34.63926 -32.62758 -32.29811 -31.24242 -29.88566 -28.09201 -27.86611 -25.53600 -25.45447 -24.00730 -23.84095 -22.10552 -21.53172 -20.70143 -19.30732 -18.60631 -17.66386 -17.53524 -17.16599 -17.12164 -16.13342 -15.57163 -15.36898 -15.33441 -14.98638 -14.74788 -14.12246 -13.86725 -13.81397 -13.69211 -13.25278 -13.14412 -12.90176 -12.61598 -12.46628 -12.06128 -12.04012 -11.79144 -11.57546 -11.46329 -11.29762 -10.95599 -10.90491 -10.68764 -10.42751 -10.26269 -10.11728 -9.98179 -9.32630 -9.16580 -9.05127 -8.93143 -8.51920 -7.17569 -6.35718 -3.29117 -0.01468 0.44041 1.70208 2.04454 2.57139 2.93209 3.15832 3.28187 3.34558 3.55026 3.56097 3.92857 4.03732 4.16444 4.23289 4.29380 4.51962 4.67071 4.79700 4.81611 4.87712 4.94722 5.04047 5.20356 5.30852 5.36395 5.40043 5.50660 5.55979 5.57174 5.72892 5.78383 5.89568 6.04634 6.13150 6.17788 6.26852 6.29732 6.31949 6.42751 6.65228 6.78500 7.04967 7.15959 7.35158 7.98019 8.10014 8.18549 8.91787 9.44185 10.30522 11.15018 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.002773 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.432149 B =10094.522480 C =10551.802673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.150 3.850 3 N -0.249 5.249 4 N -0.287 5.287 5 C 0.199 3.801 6 C -0.078 4.078 7 C -0.069 4.069 8 C -0.148 4.148 9 C 0.569 3.431 10 O -0.535 6.535 11 N -0.709 5.709 12 C 0.172 3.828 13 H 0.088 0.912 14 C -0.152 4.152 15 C -0.147 4.147 16 C 0.132 3.868 17 N -0.623 5.623 18 C -0.301 4.301 19 H 0.082 0.918 20 C -0.024 4.024 21 N -0.934 5.934 22 Si 1.068 2.932 23 H -0.296 1.296 24 H -0.292 1.292 25 H -0.288 1.288 26 C 0.097 3.903 27 C 0.139 3.861 28 N -0.395 5.395 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.399 0.601 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.041 0.959 41 H 0.261 0.739 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 18.583 11.152 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 N -0.088 5.088 4 N -0.131 5.131 5 C -0.050 4.050 6 C -0.099 4.099 7 C -0.093 4.093 8 C -0.156 4.156 9 C 0.354 3.646 10 O -0.414 6.414 11 N -0.359 5.359 12 C 0.069 3.931 13 H 0.106 0.894 14 C -0.210 4.210 15 C -0.167 4.167 16 C 0.005 3.995 17 N -0.352 5.352 18 C -0.427 4.427 19 H 0.100 0.900 20 C -0.223 4.223 21 N -0.576 5.576 22 Si 0.902 3.098 23 H -0.224 1.224 24 H -0.220 1.220 25 H -0.215 1.215 26 C -0.029 4.029 27 C 0.013 3.987 28 N -0.076 5.076 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.182 0.818 33 H 0.171 0.829 34 H 0.234 0.766 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.849 20.495 9.970 23.530 hybrid contribution -0.777 -2.054 0.995 2.411 sum -6.627 18.440 10.965 22.454 Atomic orbital electron populations 1.20288 0.82677 1.05109 1.04488 1.25067 0.97138 0.80572 1.08435 1.74201 0.96585 1.23336 1.14681 1.74927 1.10842 1.06012 1.21307 1.22495 0.84931 0.92780 1.04804 1.20195 0.97445 0.90575 1.01660 1.21263 0.95873 0.95646 0.96536 1.19605 0.93175 0.94517 1.08263 1.17543 0.85511 0.84445 0.77088 1.90815 1.20719 1.79566 1.50256 1.46054 1.08847 1.07401 1.73595 1.20714 0.97320 0.76436 0.98630 0.89416 1.22242 1.01061 1.03682 0.93995 1.23266 0.96845 0.97850 0.98775 1.22282 0.98033 0.90683 0.88534 1.46076 1.53399 1.26528 1.09163 1.20070 1.18673 1.10616 0.93308 0.89983 1.25671 0.99502 1.03838 0.93295 1.70910 1.40930 1.12365 1.33384 0.83756 0.76106 0.74872 0.75109 1.22373 1.22029 1.21481 1.22880 0.94322 0.89934 0.95736 1.21717 1.02129 0.79273 0.95556 1.43699 1.09179 1.06808 1.47879 0.89201 0.88122 0.89953 0.81772 0.82922 0.76619 0.94402 0.91917 0.88729 0.90243 0.93409 0.94108 0.92863 0.93738 0.92693 0.79732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.40 36.01 0.37 0.01 16 2 C 0.15 1.52 8.14 -154.12 -1.25 0.26 16 3 N -0.25 -3.25 12.18 32.97 0.40 -2.85 16 4 N -0.29 -3.90 12.29 31.19 0.38 -3.52 16 5 C 0.20 2.26 7.92 -155.94 -1.23 1.02 16 6 C -0.08 -0.64 10.09 -39.44 -0.40 -1.04 16 7 C -0.07 -0.52 9.53 -39.14 -0.37 -0.89 16 8 C -0.15 -1.41 5.84 -105.34 -0.61 -2.02 16 9 C 0.57 6.84 7.73 -12.44 -0.10 6.74 16 10 O -0.54 -8.10 15.93 5.29 0.08 -8.02 16 11 N -0.71 -8.24 5.03 -54.83 -0.28 -8.51 16 12 C 0.17 2.49 2.76 -67.93 -0.19 2.30 16 13 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 14 C -0.15 -2.74 8.06 37.16 0.30 -2.44 16 15 C -0.15 -2.13 4.25 -89.97 -0.38 -2.51 16 16 C 0.13 2.28 7.86 -8.51 -0.07 2.22 16 17 N -0.62 -13.65 2.09 -184.59 -0.39 -14.03 16 18 C -0.30 -8.00 9.92 -15.06 -0.15 -8.15 16 19 H 0.08 2.34 8.05 -52.49 -0.42 1.92 16 20 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 21 N -0.93 -28.49 13.71 55.49 0.76 -27.73 16 22 Si 1.07 25.21 24.89 -169.99 -4.23 20.98 16 23 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -6.32 5.95 56.52 0.34 -5.98 16 25 H -0.29 -6.29 6.22 56.52 0.35 -5.94 16 26 C 0.10 1.76 4.68 -8.36 -0.04 1.72 16 27 C 0.14 1.27 10.45 -16.40 -0.17 1.10 16 28 N -0.40 -4.06 2.94 -59.36 -0.17 -4.23 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.15 0.74 6.44 -52.49 -0.34 0.40 16 34 H 0.40 3.59 6.63 -40.82 -0.27 3.32 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.24 5.50 -51.93 -0.29 0.96 16 37 H 0.09 1.96 5.93 -51.93 -0.31 1.65 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 40 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.26 7.90 8.73 -40.82 -0.36 7.55 16 42 H 0.05 0.80 7.61 -51.93 -0.40 0.41 16 43 H 0.06 1.03 3.47 -51.93 -0.18 0.85 16 44 H 0.19 1.41 7.56 -52.49 -0.40 1.02 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -34.93 353.98 -8.13 -43.06 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.64 Total: 1.96 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -4.39 Total: -2.44 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.71 Total: -60.88 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -4.23 Total: 20.98 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.93 -8.13 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970003921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.153 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds