Wall clock time and date at job start Tue Mar 31 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30282 * 124.96729 * 2 1 4 4 C 1.34656 * 109.66597 * 180.02562 * 3 2 1 5 5 C 1.40826 * 107.26594 * 0.22795 * 4 3 2 6 6 N 1.32110 * 120.46514 * 180.36680 * 5 4 3 7 7 C 1.31728 * 121.94714 * 359.71569 * 6 5 4 8 8 C 1.38330 * 121.54863 * 0.02696 * 7 6 5 9 9 C 1.39638 * 119.37512 * 359.97095 * 8 7 6 10 10 C 1.47764 * 121.07145 * 180.02562 * 9 8 7 11 11 O 1.21557 * 119.99986 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00285 * 359.97438 * 10 9 8 13 13 C 1.46505 * 120.00207 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46918 * 35.00652 * 13 12 10 15 15 C 1.52995 * 109.46965 * 275.00529 * 13 12 10 16 16 C 1.53002 * 109.46769 * 155.00392 * 13 12 10 17 17 C 1.53496 * 114.20179 * 180.02562 * 16 13 12 18 18 N 1.47070 * 87.98352 * 87.52002 * 17 16 13 19 19 C 1.36935 * 136.05550 * 207.07944 * 18 17 16 20 20 H 1.08005 * 120.00172 * 6.50069 * 19 18 17 21 21 C 1.38815 * 119.99990 * 186.49806 * 19 18 17 22 22 N 1.31619 * 119.99663 * 6.42579 * 21 19 18 23 23 Si 1.86800 * 119.99976 * 186.42252 * 21 19 18 24 24 H 1.48495 * 109.47340 * 265.02201 * 23 21 19 25 25 H 1.48498 * 109.46951 * 25.02385 * 23 21 19 26 26 H 1.48498 * 109.46744 * 145.01993 * 23 21 19 27 27 C 1.47064 * 87.88277 * 27.34197 * 18 17 16 28 28 N 1.35994 * 124.97591 * 180.63468 * 2 1 3 29 29 H 0.97004 * 126.34906 * 359.36291 * 28 2 1 30 30 H 1.08994 * 109.47270 * 89.97078 * 1 2 3 31 31 H 1.09006 * 109.46804 * 209.97053 * 1 2 3 32 32 H 1.08992 * 109.46994 * 329.96756 * 1 2 3 33 33 H 1.08006 * 119.21991 * 180.02562 * 7 6 5 34 34 H 1.08002 * 120.31398 * 180.02562 * 8 7 6 35 35 H 0.96997 * 119.99864 * 0.02562 * 12 10 9 36 36 H 1.09001 * 109.47570 * 60.00269 * 15 13 12 37 37 H 1.09008 * 109.46757 * 179.97438 * 15 13 12 38 38 H 1.09000 * 109.47403 * 299.99826 * 15 13 12 39 39 H 1.08996 * 113.41116 * 46.80608 * 16 13 12 40 40 H 1.09004 * 113.46865 * 332.74440 * 17 16 13 41 41 H 1.08993 * 113.51976 * 202.30849 * 17 16 13 42 42 H 0.97005 * 119.99413 * 179.97438 * 22 21 19 43 43 H 1.09000 * 113.46743 * 87.44096 * 27 18 17 44 44 H 1.08999 * 113.46191 * 217.87327 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5525 0.7123 -0.0006 5 6 3.6008 -0.6951 -0.0063 6 7 4.7618 -1.3256 -0.0008 7 6 5.9077 -0.6759 0.0046 8 6 5.9559 0.7066 0.0053 9 6 4.7637 1.4335 -0.0004 10 6 4.7715 2.9112 -0.0004 11 8 3.7220 3.5245 -0.0050 12 7 5.9421 3.5790 0.0056 13 6 5.9498 5.0440 0.0051 14 1 5.1068 5.4120 0.5899 15 6 5.8345 5.5540 -1.4328 16 6 7.2566 5.5473 0.6215 17 6 7.3789 7.0764 0.6756 18 7 6.6900 7.0336 1.9743 19 6 5.9004 7.8851 2.7001 20 1 5.5742 8.8196 2.2678 21 6 5.5192 7.5471 3.9914 22 7 6.0173 6.4720 4.5644 23 14 4.2995 8.6182 4.9157 24 1 5.0366 9.5871 5.7660 25 1 3.4532 9.3562 3.9439 26 1 3.4390 7.7627 5.7718 27 6 7.2278 5.6766 2.1533 28 7 2.2866 -1.1143 -0.0123 29 1 1.9760 -2.0332 -0.0138 30 1 -0.3633 0.0005 -1.0276 31 1 -0.3633 -0.8903 0.5134 32 1 -0.3633 0.8896 0.5143 33 1 6.8312 -1.2358 0.0085 34 1 6.9067 1.2189 0.0093 35 1 6.7796 3.0896 0.0096 36 1 4.9035 5.1954 -1.8720 37 1 5.8397 6.6440 -1.4331 38 1 6.6775 5.1860 -2.0176 39 1 8.1411 5.0413 0.2345 40 1 6.8087 7.5853 -0.1016 41 1 8.4083 7.4284 0.7417 42 1 5.7512 6.2360 5.4669 43 1 8.2177 5.6586 2.6091 44 1 6.5288 4.9929 2.6350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970190817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:12 Heat of formation + Delta-G solvation = 114.339443 kcal Electronic energy + Delta-G solvation = -27770.975362 eV Core-core repulsion = 23919.540039 eV Total energy + Delta-G solvation = -3851.435323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.61391 -39.75884 -38.59681 -37.91982 -34.57920 -33.82794 -32.26796 -31.74081 -31.64852 -29.82748 -28.30109 -27.54946 -25.02350 -24.20540 -23.67906 -23.15962 -21.76281 -21.24152 -20.43298 -19.23384 -18.05480 -17.66140 -17.10902 -16.66719 -16.13666 -15.94335 -15.20138 -14.89813 -14.76797 -14.52160 -14.09375 -13.78614 -13.73146 -13.69402 -13.37670 -13.04555 -12.98243 -12.53098 -12.47726 -12.32312 -11.97510 -11.73229 -11.33751 -11.20602 -11.02418 -10.87035 -10.72660 -10.65609 -10.27962 -9.95829 -9.78422 -9.72103 -9.26186 -9.12271 -9.10130 -8.75115 -8.64314 -8.53843 -6.80903 -5.71378 -3.01600 0.26391 0.95630 2.24539 2.55019 3.07064 3.29813 3.45250 3.50933 3.53238 3.76358 3.85435 4.18737 4.43595 4.53615 4.59164 4.67309 4.85969 4.97912 5.12207 5.23353 5.29100 5.36404 5.39065 5.48392 5.58919 5.60793 5.70630 5.82188 5.84824 5.95006 6.10455 6.16337 6.33581 6.35629 6.51182 6.60359 6.70117 6.77505 6.85555 6.95326 7.24505 7.34677 7.58664 7.60404 7.63133 7.83013 8.03988 8.54688 9.10503 9.77772 10.71563 11.47406 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.003296 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.835783 B = 8494.394129 C = 9500.023170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.455 5.455 4 C 0.057 3.943 5 C 0.232 3.768 6 N -0.471 5.471 7 C 0.130 3.870 8 C -0.150 4.150 9 C -0.028 4.028 10 C 0.550 3.450 11 O -0.499 6.499 12 N -0.713 5.713 13 C 0.172 3.828 14 H 0.103 0.897 15 C -0.157 4.157 16 C -0.156 4.156 17 C 0.125 3.875 18 N -0.607 5.607 19 C -0.218 4.218 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.279 1.279 26 H -0.290 1.290 27 C 0.166 3.834 28 N -0.587 5.587 29 H 0.427 0.573 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.173 0.827 34 H 0.150 0.850 35 H 0.393 0.607 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.253 0.747 43 H 0.028 0.972 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 -18.609 -13.046 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.027 3.973 3 N -0.174 5.174 4 C -0.066 4.066 5 C -0.005 4.005 6 N -0.185 5.185 7 C -0.035 4.035 8 C -0.173 4.173 9 C -0.041 4.041 10 C 0.335 3.665 11 O -0.372 6.372 12 N -0.365 5.365 13 C 0.068 3.932 14 H 0.121 0.879 15 C -0.215 4.215 16 C -0.176 4.176 17 C -0.001 4.001 18 N -0.333 5.333 19 C -0.345 4.345 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.204 1.204 26 H -0.216 1.216 27 C 0.040 3.960 28 N -0.203 5.203 29 H 0.267 0.733 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.190 0.810 34 H 0.168 0.832 35 H 0.228 0.772 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.931 -18.011 -12.758 22.419 hybrid contribution 0.272 -0.168 0.776 0.840 sum -3.659 -18.180 -11.982 22.078 Atomic orbital electron populations 1.20443 0.83328 1.05197 1.04581 1.23996 0.96120 0.80172 0.97026 1.70378 1.00478 1.26618 1.19961 1.19250 0.92377 0.90871 1.04151 1.18886 0.86195 0.90916 1.04520 1.66179 0.96072 1.41530 1.14673 1.22476 0.94181 0.91319 0.95573 1.22205 0.97973 0.95538 1.01580 1.19815 0.90742 0.94224 0.99302 1.17874 0.84587 0.85963 0.78109 1.90866 1.31044 1.68486 1.46822 1.45963 1.07554 1.08025 1.74969 1.20625 0.99371 0.77122 0.96039 0.87867 1.22128 1.01209 1.01828 0.96367 1.23321 0.95475 0.98312 1.00504 1.22418 0.95622 0.91869 0.90235 1.45705 1.54385 1.14847 1.18371 1.18928 1.20999 0.99980 0.94625 0.90161 1.24793 1.00676 0.98387 0.96417 1.69843 1.45945 1.26582 1.14182 0.86134 0.80815 0.79318 0.79744 1.21731 1.20429 1.21634 1.22036 0.96692 0.88205 0.89033 1.42756 1.03577 1.10492 1.63437 0.73337 0.88957 0.89910 0.87841 0.81035 0.83222 0.77233 0.92724 0.91238 0.93116 0.91187 0.93794 0.94916 0.93758 0.95410 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.51 36.01 0.38 -0.11 16 2 C 0.29 3.33 8.08 -154.72 -1.25 2.08 16 3 N -0.46 -7.49 10.63 -8.07 -0.09 -7.57 16 4 C 0.06 0.92 6.85 -84.62 -0.58 0.34 16 5 C 0.23 3.10 8.46 -155.65 -1.32 1.78 16 6 N -0.47 -5.73 10.35 -12.30 -0.13 -5.86 16 7 C 0.13 1.27 11.14 -17.56 -0.20 1.08 16 8 C -0.15 -1.60 9.60 -39.03 -0.37 -1.98 16 9 C -0.03 -0.43 5.93 -104.45 -0.62 -1.04 16 10 C 0.55 9.88 7.75 -12.37 -0.10 9.78 16 11 O -0.50 -11.20 15.85 5.32 0.08 -11.11 16 12 N -0.71 -11.04 5.04 -54.77 -0.28 -11.31 16 13 C 0.17 3.08 2.43 -67.93 -0.16 2.91 16 14 H 0.10 2.40 7.36 -51.93 -0.38 2.02 16 15 C -0.16 -2.42 9.29 37.16 0.35 -2.08 16 16 C -0.16 -2.79 3.73 -89.97 -0.34 -3.12 16 17 C 0.13 2.53 8.08 -8.51 -0.07 2.46 16 18 N -0.61 -15.73 3.57 -184.62 -0.66 -16.39 16 19 C -0.22 -6.28 10.73 -15.06 -0.16 -6.44 16 20 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -28.21 11.81 55.49 0.66 -27.55 16 23 Si 0.91 23.07 29.56 -169.99 -5.02 18.04 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 C 0.17 3.89 6.77 -8.38 -0.06 3.84 16 28 N -0.59 -5.91 6.23 -9.43 -0.06 -5.97 16 29 H 0.43 2.62 8.96 -40.82 -0.37 2.25 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.15 1.08 6.53 -52.49 -0.34 0.74 16 35 H 0.39 4.61 6.74 -40.82 -0.28 4.34 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.07 6.50 -51.92 -0.34 0.73 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.84 6.43 -51.93 -0.33 0.51 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.62 7.56 -51.93 -0.39 1.23 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -39.68 368.62 -10.31 -49.99 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.78 Total: 2.94 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -4.59 Total: 9.23 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -0.55 Total: -74.65 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.68 -10.31 -49.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970190817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.328 kcal (2) G-P(sol) polarization free energy of solvation -39.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds