Wall clock time and date at job start Tue Mar 31 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30288 * 124.96969 * 2 1 4 4 C 1.34652 * 109.66776 * 180.02562 * 3 2 1 5 5 C 1.40830 * 107.26119 * 0.22799 * 4 3 2 6 6 N 1.32115 * 120.46071 * 180.32572 * 5 4 3 7 7 C 1.31730 * 121.94840 * 359.73598 * 6 5 4 8 8 C 1.38331 * 121.54767 * 0.02562 * 7 6 5 9 9 C 1.39634 * 119.37854 * 0.02562 * 8 7 6 10 10 C 1.47763 * 121.07754 * 179.97438 * 9 8 7 11 11 O 1.21560 * 120.00212 * 179.97438 * 10 9 8 12 12 N 1.34777 * 120.00097 * 359.71754 * 10 9 8 13 13 C 1.46499 * 120.00245 * 180.27564 * 12 10 9 14 14 H 1.08997 * 109.46773 * 325.00122 * 13 12 10 15 15 C 1.53004 * 109.46802 * 85.00398 * 13 12 10 16 16 C 1.53001 * 109.47056 * 205.00536 * 13 12 10 17 17 C 1.53945 * 113.74103 * 162.19974 * 16 13 12 18 18 N 1.47813 * 86.03478 * 222.08220 * 17 16 13 19 19 C 1.36935 * 134.45426 * 204.64279 * 18 17 16 20 20 H 1.08000 * 120.00025 * 182.58067 * 19 18 17 21 21 C 1.38809 * 120.00061 * 2.58700 * 19 18 17 22 22 N 1.31614 * 120.00066 * 353.41149 * 21 19 18 23 23 Si 1.86805 * 119.99982 * 173.41520 * 21 19 18 24 24 H 1.48504 * 109.47073 * 94.97037 * 23 21 19 25 25 H 1.48503 * 109.47086 * 214.96957 * 23 21 19 26 26 H 1.48504 * 109.47218 * 334.97009 * 23 21 19 27 27 C 1.47577 * 91.05116 * 24.54790 * 18 17 16 28 28 N 1.35995 * 124.97365 * 180.60206 * 2 1 3 29 29 H 0.96996 * 126.35392 * 359.39768 * 28 2 1 30 30 H 1.09004 * 109.46943 * 89.97312 * 1 2 3 31 31 H 1.08992 * 109.46987 * 209.97497 * 1 2 3 32 32 H 1.09002 * 109.47239 * 329.97682 * 1 2 3 33 33 H 1.08000 * 119.22551 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.31407 * 180.02562 * 8 7 6 35 35 H 0.97003 * 119.99646 * 0.28280 * 12 10 9 36 36 H 1.09002 * 109.46675 * 184.48339 * 15 13 12 37 37 H 1.09000 * 109.46977 * 304.48750 * 15 13 12 38 38 H 1.09000 * 109.46991 * 64.49051 * 15 13 12 39 39 H 1.09005 * 112.94340 * 293.79018 * 16 13 12 40 40 H 1.08997 * 113.76690 * 336.34761 * 17 16 13 41 41 H 1.09003 * 113.76988 * 107.74403 * 17 16 13 42 42 H 0.97005 * 120.00312 * 179.97438 * 22 21 19 43 43 H 1.09004 * 113.76922 * 221.14823 * 27 18 17 44 44 H 1.08997 * 113.87074 * 89.76865 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2538 1.0677 0.0000 4 6 3.5526 0.7123 -0.0006 5 6 3.6007 -0.6952 -0.0063 6 7 4.7617 -1.3256 -0.0016 7 6 5.9077 -0.6760 0.0033 8 6 5.9559 0.7065 0.0044 9 6 4.7638 1.4335 0.0007 10 6 4.7715 2.9111 0.0022 11 8 3.7220 3.5245 -0.0015 12 7 5.9422 3.5789 0.0130 13 6 5.9498 5.0439 0.0207 14 1 5.1136 5.4146 -0.5721 15 6 5.8178 5.5470 1.4596 16 6 7.2636 5.5501 -0.5782 17 6 7.2162 7.0243 -1.0193 18 7 7.9584 6.5825 -2.2188 19 6 8.7960 7.1992 -3.1095 20 1 9.1898 6.6483 -3.9508 21 6 9.1389 8.5324 -2.9309 22 7 8.5603 9.2396 -1.9837 23 14 10.4217 9.3228 -4.0352 24 1 9.7461 10.0146 -5.1623 25 1 11.2106 10.3072 -3.2516 26 1 11.3282 8.2749 -4.5696 27 6 7.4366 5.2102 -2.0696 28 7 2.2866 -1.1143 -0.0117 29 1 1.9761 -2.0332 -0.0132 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5142 33 1 6.8312 -1.2359 0.0075 34 1 6.9067 1.2188 0.0080 35 1 6.7797 3.0895 0.0156 36 1 5.7434 6.6345 1.4588 37 1 4.9222 5.1218 1.9124 38 1 6.6940 5.2432 2.0325 39 1 8.1321 5.3023 0.0320 40 1 6.2108 7.3867 -1.2335 41 1 7.7827 7.6947 -0.3729 42 1 8.8002 10.1712 -1.8587 43 1 8.1786 4.4348 -2.2604 44 1 6.4961 5.0366 -2.5926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970190818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:15 Heat of formation + Delta-G solvation = 107.941701 kcal Electronic energy + Delta-G solvation = -27287.480357 eV Core-core repulsion = 23435.767608 eV Total energy + Delta-G solvation = -3851.712749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.72816 -39.86463 -38.59391 -37.85337 -34.77070 -33.95081 -32.34260 -31.84255 -31.73030 -30.05711 -28.41007 -27.44411 -25.05283 -24.42831 -23.79253 -23.24503 -21.62652 -21.24006 -20.46292 -19.43525 -18.32869 -17.80874 -17.27212 -16.75876 -16.24153 -15.91836 -15.34528 -14.94591 -14.79697 -14.63920 -14.12346 -13.89510 -13.81934 -13.76931 -13.61547 -13.17548 -13.10466 -12.63710 -12.42865 -12.26925 -12.03506 -11.54099 -11.35710 -11.34405 -11.20198 -11.14048 -10.87625 -10.63232 -10.33627 -10.14580 -9.81468 -9.78186 -9.43898 -9.30163 -9.21960 -8.81924 -8.71361 -8.65535 -6.85260 -5.74671 -3.05384 0.14174 0.84820 2.13987 2.42879 2.92634 3.15699 3.40899 3.45835 3.48097 3.64823 3.71263 4.08096 4.32821 4.47300 4.47857 4.56007 4.75782 4.86891 5.02375 5.14589 5.19136 5.25040 5.37236 5.44385 5.48351 5.57707 5.59794 5.67744 5.75065 5.87007 6.04185 6.12505 6.22709 6.32958 6.40336 6.49715 6.62753 6.67251 6.74638 6.85251 7.25419 7.40814 7.47765 7.51370 7.58247 7.66942 8.00926 8.36623 9.07418 9.73896 10.63588 11.43062 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.002387 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.541534 B =11726.796414 C =12139.829804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.295 3.705 3 N -0.457 5.457 4 C 0.057 3.943 5 C 0.232 3.768 6 N -0.470 5.470 7 C 0.131 3.869 8 C -0.148 4.148 9 C -0.032 4.032 10 C 0.551 3.449 11 O -0.505 6.505 12 N -0.713 5.713 13 C 0.152 3.848 14 H 0.089 0.911 15 C -0.157 4.157 16 C -0.146 4.146 17 C 0.176 3.824 18 N -0.612 5.612 19 C -0.223 4.223 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.125 3.875 28 N -0.587 5.587 29 H 0.427 0.573 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.173 0.827 34 H 0.151 0.849 35 H 0.396 0.604 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.253 0.747 43 H 0.041 0.959 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 -23.647 8.303 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.028 3.972 3 N -0.176 5.176 4 C -0.067 4.067 5 C -0.005 4.005 6 N -0.183 5.183 7 C -0.035 4.035 8 C -0.171 4.171 9 C -0.045 4.045 10 C 0.335 3.665 11 O -0.379 6.379 12 N -0.365 5.365 13 C 0.048 3.952 14 H 0.107 0.893 15 C -0.216 4.216 16 C -0.166 4.166 17 C 0.050 3.950 18 N -0.339 5.339 19 C -0.350 4.350 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.001 4.001 28 N -0.202 5.202 29 H 0.267 0.733 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.190 0.810 34 H 0.169 0.831 35 H 0.231 0.769 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.413 -22.899 8.152 27.293 hybrid contribution 1.259 -0.226 -0.730 1.473 sum -11.154 -23.125 7.422 26.725 Atomic orbital electron populations 1.20448 0.83297 1.05116 1.04716 1.23998 0.96119 0.80185 0.96921 1.70366 1.00443 1.26636 1.20196 1.19246 0.92360 0.90878 1.04176 1.18900 0.86208 0.90917 1.04522 1.66192 0.96080 1.41553 1.14488 1.22502 0.94206 0.91337 0.95445 1.22234 0.98017 0.95585 1.01305 1.19786 0.90732 0.94160 0.99780 1.17920 0.84562 0.86025 0.77966 1.90849 1.31088 1.68571 1.47388 1.46046 1.07677 1.08084 1.74678 1.21139 0.99671 0.77520 0.96908 0.89312 1.22110 1.01362 1.02018 0.96082 1.23844 0.95092 1.01255 0.96458 1.22232 0.94732 0.90183 0.87847 1.46046 1.51406 1.05305 1.31094 1.19025 1.18240 0.93759 1.04005 0.90339 1.24777 1.00310 0.96210 0.99163 1.69823 1.44323 1.08120 1.34526 0.86127 0.81207 0.79060 0.79521 1.21718 1.21598 1.20602 1.22535 0.96108 0.89484 0.91976 1.42761 1.03588 1.10541 1.63321 0.73270 0.88862 0.89889 0.87898 0.80959 0.83139 0.76889 0.91082 0.92788 0.92710 0.89267 0.95352 0.90833 0.93651 0.94103 0.95017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.29 2.87 8.08 -154.71 -1.25 1.62 16 3 N -0.46 -6.65 10.63 -8.07 -0.09 -6.74 16 4 C 0.06 0.82 6.85 -84.62 -0.58 0.24 16 5 C 0.23 2.77 8.46 -155.65 -1.32 1.45 16 6 N -0.47 -5.16 10.35 -12.30 -0.13 -5.29 16 7 C 0.13 1.14 11.14 -17.56 -0.20 0.94 16 8 C -0.15 -1.39 9.60 -39.03 -0.37 -1.77 16 9 C -0.03 -0.42 5.93 -104.45 -0.62 -1.04 16 10 C 0.55 8.59 7.75 -12.37 -0.10 8.50 16 11 O -0.50 -9.89 15.85 5.31 0.08 -9.80 16 12 N -0.71 -9.65 4.91 -54.78 -0.27 -9.92 16 13 C 0.15 2.40 2.29 -67.93 -0.16 2.24 16 14 H 0.09 1.64 7.49 -51.93 -0.39 1.25 16 15 C -0.16 -2.28 9.43 37.16 0.35 -1.92 16 16 C -0.15 -2.62 3.35 -89.70 -0.30 -2.92 16 17 C 0.18 4.10 7.03 -2.84 -0.02 4.08 16 18 N -0.61 -15.81 3.70 -177.72 -0.66 -16.47 16 19 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16 20 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -27.50 11.43 55.49 0.63 -26.87 16 23 Si 0.91 22.29 29.56 -169.99 -5.02 17.27 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.13 2.54 8.38 -2.97 -0.02 2.51 16 28 N -0.59 -5.09 6.23 -9.43 -0.06 -5.15 16 29 H 0.43 2.10 8.96 -40.82 -0.37 1.73 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.15 0.94 6.53 -52.48 -0.34 0.60 16 35 H 0.40 4.18 6.74 -40.82 -0.28 3.90 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 41 H 0.07 1.88 7.20 -51.93 -0.37 1.50 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -38.51 371.37 -10.31 -48.81 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.94 Total: 1.43 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -4.46 Total: 7.13 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -0.56 Total: -70.44 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.51 -10.31 -48.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970190818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.753 kcal (2) G-P(sol) polarization free energy of solvation -38.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds