Wall clock time and date at job start Tue Mar 31 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30249 * 125.70689 * 2 1 4 4 N 1.39995 * 109.75302 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.90639 * 180.02562 * 4 3 2 6 6 C 1.37074 * 108.18317 * 359.97438 * 4 3 2 7 7 N 1.32543 * 133.44262 * 179.97438 * 6 4 3 8 8 C 1.31450 * 121.97794 * 180.02562 * 7 6 4 9 9 C 1.50697 * 119.16804 * 180.02562 * 8 7 6 10 10 C 1.38701 * 121.66607 * 0.02562 * 8 7 6 11 11 C 1.39289 * 119.36601 * 359.97438 * 10 8 7 12 12 C 1.47867 * 121.09198 * 179.97438 * 11 10 8 13 13 O 1.21553 * 120.00012 * 225.67216 * 12 11 10 14 14 N 1.34782 * 120.00158 * 45.66898 * 12 11 10 15 15 C 1.47425 * 125.64415 * 355.18855 * 14 12 11 16 16 C 1.54905 * 104.82760 * 155.83493 * 15 14 12 17 17 C 1.55156 * 101.58472 * 37.01095 * 16 15 14 18 18 H 1.08998 * 110.72501 * 83.03759 * 17 16 15 19 19 N 1.46500 * 110.72344 * 206.13497 * 17 16 15 20 20 C 1.36931 * 120.00057 * 204.99756 * 19 17 16 21 21 H 1.07996 * 120.00107 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99689 * 179.97438 * 20 19 17 23 23 N 1.31618 * 120.00316 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99781 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47023 * 180.02562 * 24 22 20 26 26 H 1.48506 * 109.47057 * 300.00138 * 24 22 20 27 27 H 1.48493 * 109.47367 * 60.00134 * 24 22 20 28 28 C 1.47014 * 125.64671 * 175.14450 * 14 12 11 29 29 C 1.40930 * 106.34648 * 0.23763 * 6 4 3 30 30 H 1.09001 * 109.47026 * 95.84385 * 1 2 3 31 31 H 1.08998 * 109.47010 * 215.84355 * 1 2 3 32 32 H 1.09000 * 109.47475 * 335.83891 * 1 2 3 33 33 H 1.09002 * 109.47046 * 269.98035 * 9 8 7 34 34 H 1.09002 * 109.46927 * 29.98316 * 9 8 7 35 35 H 1.08997 * 109.47095 * 149.97564 * 9 8 7 36 36 H 1.08005 * 120.31793 * 180.02562 * 10 8 7 37 37 H 1.08991 * 110.36733 * 36.99513 * 15 14 12 38 38 H 1.08997 * 110.36315 * 274.66989 * 15 14 12 39 39 H 1.08996 * 111.00744 * 278.92978 * 16 15 14 40 40 H 1.09009 * 111.00434 * 155.08043 * 16 15 14 41 41 H 0.97005 * 119.99969 * 24.99304 * 19 17 16 42 42 H 0.97002 * 119.99607 * 0.02562 * 23 22 20 43 43 H 1.09001 * 109.88636 * 61.68229 * 28 14 12 44 44 H 1.08992 * 109.88863 * 300.51282 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2671 1.0576 0.0000 4 7 3.6131 0.6728 -0.0006 5 1 4.3761 1.2719 -0.0004 6 6 3.6665 -0.6969 -0.0004 7 7 4.6635 -1.5701 -0.0012 8 6 4.4526 -2.8676 -0.0012 9 6 5.6335 -3.8037 -0.0015 10 6 3.1705 -3.3968 -0.0010 11 6 2.0759 -2.5354 -0.0002 12 6 0.6928 -3.0582 -0.0005 13 8 -0.1359 -2.5844 -0.7531 14 7 0.3508 -4.0601 0.8336 15 6 1.2729 -4.7910 1.7219 16 6 0.3750 -5.3443 2.8565 17 6 -0.9170 -5.7121 2.0802 18 1 -0.8222 -6.6941 1.6167 19 7 -2.0836 -5.6693 2.9653 20 6 -3.1930 -6.4165 2.6725 21 1 -3.2082 -7.0372 1.7888 22 6 -4.2981 -6.3763 3.5115 23 7 -4.2798 -5.6196 4.5882 24 14 -5.8114 -7.3963 3.1125 25 1 -6.8449 -7.1779 4.1562 26 1 -6.3496 -6.9871 1.7903 27 1 -5.4429 -8.8343 3.0733 28 6 -1.0035 -4.6045 1.0089 29 6 2.3306 -1.1458 -0.0053 30 1 -0.3633 -0.1046 -1.0223 31 1 -0.3633 -0.8330 0.6018 32 1 -0.3634 0.9376 0.4206 33 1 5.9178 -4.0296 -1.0293 34 1 6.4713 -3.3319 0.5119 35 1 5.3656 -4.7267 0.5127 36 1 3.0223 -4.4667 -0.0006 37 1 2.0241 -4.1142 2.1285 38 1 1.7502 -5.6092 1.1827 39 1 0.1759 -4.5784 3.6060 40 1 0.8217 -6.2281 3.3124 41 1 -2.0701 -5.1116 3.7589 42 1 -3.4941 -5.0896 4.7952 43 1 -1.3585 -5.0256 0.0683 44 1 -1.6791 -3.8173 1.3434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970261880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:49 Heat of formation + Delta-G solvation = 84.948276 kcal Electronic energy + Delta-G solvation = -28021.264846 eV Core-core repulsion = 24168.555027 eV Total energy + Delta-G solvation = -3852.709819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.15287 -39.96356 -38.60649 -37.50095 -34.55789 -33.95339 -32.50227 -31.94687 -31.24625 -29.64354 -28.09723 -27.96280 -27.33994 -25.08863 -23.59520 -22.75887 -22.50814 -20.83835 -20.20322 -19.48485 -18.27354 -17.55512 -17.48389 -17.22204 -16.38013 -15.79742 -15.38815 -15.23746 -14.63653 -14.56277 -14.20828 -14.16771 -13.74324 -13.38993 -13.34694 -13.12016 -13.02581 -12.94210 -12.82338 -12.52287 -12.36624 -12.10583 -11.92701 -11.57005 -11.33179 -11.13889 -10.85979 -10.75640 -10.68064 -10.39406 -10.35604 -10.03488 -9.66585 -9.28038 -9.08458 -9.06251 -8.72916 -8.53537 -7.22032 -6.20936 -3.23917 0.15916 0.84608 2.07777 2.13204 2.61356 2.89910 3.40554 3.48089 3.51102 3.68481 3.82079 4.03510 4.19797 4.37606 4.46443 4.58679 4.75254 4.82267 4.96047 5.03333 5.10807 5.16988 5.21777 5.29919 5.38259 5.52189 5.55960 5.58245 5.61294 5.66177 5.70062 5.75803 5.76386 5.86925 6.04153 6.12968 6.17148 6.27140 6.33142 6.49738 6.69404 6.80698 7.11389 7.50065 7.59609 7.70072 8.05924 8.64377 9.07227 9.93965 10.06329 11.26656 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.002959 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.891369 B = 9461.028707 C =10401.233175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.128 3.872 3 N -0.242 5.242 4 N -0.492 5.492 5 H 0.446 0.554 6 C 0.321 3.679 7 N -0.498 5.498 8 C 0.200 3.800 9 C -0.106 4.106 10 C -0.186 4.186 11 C 0.015 3.985 12 C 0.563 3.437 13 O -0.520 6.520 14 N -0.601 5.601 15 C 0.098 3.902 16 C -0.144 4.144 17 C 0.178 3.822 18 H 0.072 0.928 19 N -0.723 5.723 20 C -0.342 4.342 21 H 0.068 0.932 22 C -0.039 4.039 23 N -0.938 5.938 24 Si 1.080 2.920 25 H -0.284 1.284 26 H -0.293 1.293 27 H -0.294 1.294 28 C 0.083 3.917 29 C -0.191 4.191 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.370 0.630 42 H 0.256 0.744 43 H 0.064 0.936 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.474 5.408 -8.303 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 N -0.059 5.059 4 N -0.209 5.209 5 H 0.292 0.708 6 C 0.079 3.921 7 N -0.215 5.215 8 C 0.050 3.950 9 C -0.163 4.163 10 C -0.209 4.209 11 C 0.001 3.999 12 C 0.350 3.650 13 O -0.397 6.397 14 N -0.334 5.334 15 C -0.026 4.026 16 C -0.183 4.183 17 C 0.065 3.935 18 H 0.089 0.911 19 N -0.364 5.364 20 C -0.473 4.473 21 H 0.086 0.914 22 C -0.237 4.237 23 N -0.583 5.583 24 Si 0.910 3.090 25 H -0.210 1.210 26 H -0.221 1.221 27 H -0.221 1.221 28 C -0.042 4.042 29 C -0.202 4.202 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.167 0.833 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.204 0.796 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.276 6.858 -8.394 22.114 hybrid contribution 1.353 -0.135 -0.400 1.418 sum 20.629 6.723 -8.794 23.411 Atomic orbital electron populations 1.20434 0.84698 1.03474 1.04738 1.22427 0.97732 0.88308 0.96321 1.76883 0.85950 1.22236 1.20784 1.45910 1.06488 1.02040 1.66495 0.70799 1.18933 0.89680 0.86699 0.96745 1.66285 1.34144 1.02357 1.18694 1.21144 0.94397 0.88789 0.90650 1.20824 0.94746 0.96984 1.03772 1.22024 0.91682 1.01180 1.05999 1.19843 0.94216 0.91464 0.94412 1.17719 0.86759 0.79572 0.80925 1.90820 1.50853 1.58662 1.39361 1.48488 1.11574 1.33515 1.39855 1.22491 0.93070 0.95664 0.91346 1.23131 0.96685 1.01462 0.96988 1.21153 0.86798 0.95508 0.90020 0.91051 1.42382 1.13267 1.54098 1.26612 1.20057 0.94423 1.22888 1.09890 0.91429 1.25820 1.01113 1.01648 0.95131 1.70903 1.31526 1.29398 1.26450 0.83252 0.75542 0.74871 0.75353 1.20979 1.22074 1.22121 1.23311 0.81305 0.98449 1.01102 1.19155 0.94120 0.93577 1.13360 0.88838 0.89697 0.90664 0.89642 0.89966 0.89727 0.83283 0.90830 0.90931 0.90674 0.89763 0.79593 0.93315 0.91792 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 8.69 36.00 0.31 -0.67 16 2 C 0.13 1.81 7.22 -82.18 -0.59 1.22 16 3 N -0.24 -3.25 12.57 33.83 0.43 -2.83 16 4 N -0.49 -5.77 7.43 31.14 0.23 -5.54 16 5 H 0.45 3.76 8.96 -182.68 -1.64 2.12 16 6 C 0.32 4.20 8.48 -156.06 -1.32 2.87 16 7 N -0.50 -5.90 10.25 -8.59 -0.09 -5.99 16 8 C 0.20 1.95 6.78 -82.59 -0.56 1.39 16 9 C -0.11 -0.61 10.14 36.00 0.37 -0.25 16 10 C -0.19 -1.93 7.78 -39.02 -0.30 -2.23 16 11 C 0.01 0.20 5.31 -104.41 -0.55 -0.36 16 12 C 0.56 8.67 6.56 -12.32 -0.08 8.59 16 13 O -0.52 -9.40 14.39 5.32 0.08 -9.32 16 14 N -0.60 -8.79 3.33 -171.63 -0.57 -9.36 16 15 C 0.10 1.11 5.38 -2.53 -0.01 1.10 16 16 C -0.14 -1.96 6.71 -24.58 -0.17 -2.13 16 17 C 0.18 3.16 3.61 -66.09 -0.24 2.93 16 18 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 19 N -0.72 -16.74 5.15 -51.65 -0.27 -17.00 16 20 C -0.34 -9.08 9.96 -15.06 -0.15 -9.23 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 23 N -0.94 -28.00 13.70 55.49 0.76 -27.24 16 24 Si 1.08 25.03 29.92 -169.99 -5.09 19.95 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.08 1.46 6.62 -3.07 -0.02 1.44 16 29 C -0.19 -2.72 5.99 -106.63 -0.64 -3.36 16 30 H 0.09 1.24 7.86 -51.93 -0.41 0.83 16 31 H 0.08 1.24 6.32 -51.93 -0.33 0.91 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.32 8.07 -51.93 -0.42 -0.09 16 36 H 0.15 1.18 6.51 -52.48 -0.34 0.84 16 37 H 0.07 0.75 6.95 -51.93 -0.36 0.39 16 38 H 0.07 0.65 7.49 -51.93 -0.39 0.27 16 39 H 0.07 1.09 8.01 -51.93 -0.42 0.68 16 40 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 41 H 0.37 8.90 6.59 -40.82 -0.27 8.63 16 42 H 0.26 7.47 6.77 -40.82 -0.28 7.19 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -33.39 360.99 -10.14 -43.53 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.00 Total: 8.23 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -4.06 Total: 0.13 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: 0.49 Total: -67.96 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.09 Total: 19.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.39 -10.14 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970261880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.481 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds