Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00155 * 2 1 4 4 H 1.48502 * 109.47190 * 239.99883 * 3 2 1 5 5 H 1.48500 * 109.47464 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46948 * 120.00593 * 3 2 1 7 7 C 1.38815 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00139 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00073 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.88286 * 37.42687 * 10 9 7 12 12 C 1.55156 * 111.00484 * 273.55088 * 10 9 7 13 13 C 1.54332 * 102.94237 * 206.38636 * 12 10 9 14 14 N 1.47022 * 107.26931 * 22.18988 * 13 12 10 15 15 C 1.34775 * 125.64623 * 181.03091 * 14 13 12 16 16 O 1.21280 * 120.00013 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99977 * 0.02562 * 15 14 13 18 18 C 1.52999 * 109.46824 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47131 * 180.02562 * 18 17 15 20 20 N 1.30156 * 124.94362 * 305.10613 * 19 18 17 21 21 C 1.35603 * 109.59344 * 179.97438 * 20 19 18 22 22 C 1.39522 * 134.57706 * 179.97438 * 21 20 19 23 23 N 1.31661 * 120.11958 * 179.97438 * 22 21 20 24 24 C 1.32253 * 122.38079 * 0.02562 * 23 22 21 25 25 C 1.36815 * 121.42166 * 0.02562 * 24 23 22 26 26 C 1.39043 * 118.91385 * 359.97438 * 25 24 23 27 27 N 1.36169 * 124.95089 * 124.99674 * 19 18 17 28 28 H 0.97008 * 126.33128 * 0.04940 * 27 19 18 29 29 C 1.47423 * 108.70374 * 1.28667 * 14 13 12 30 30 H 0.97002 * 119.99994 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99953 * 0.02562 * 9 7 2 32 32 H 1.08997 * 110.72137 * 88.02311 * 12 10 9 33 33 H 1.09003 * 110.71994 * 324.74260 * 12 10 9 34 34 H 1.09002 * 109.87843 * 262.77740 * 13 12 10 35 35 H 1.08994 * 110.01072 * 141.68302 * 13 12 10 36 36 H 1.08998 * 109.46585 * 60.00675 * 17 15 14 37 37 H 1.08997 * 109.47252 * 300.00566 * 17 15 14 38 38 H 1.08999 * 109.47472 * 60.00070 * 18 17 15 39 39 H 1.09003 * 109.47431 * 299.99655 * 18 17 15 40 40 H 1.07990 * 119.93901 * 0.02562 * 22 21 20 41 41 H 1.08004 * 119.29349 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.54742 * 179.72621 * 25 24 23 43 43 H 1.08998 * 110.36151 * 94.48295 * 29 14 13 44 44 H 1.08998 * 110.37137 * 216.80296 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0017 11 1 2.9530 -3.5893 0.6166 12 6 2.4125 -4.0930 -1.4478 13 6 2.5169 -5.6283 -1.3300 14 7 1.7457 -6.0285 -0.1440 15 6 1.6060 -7.2884 0.3137 16 8 0.9429 -7.5031 1.3062 17 6 2.2739 -8.4306 -0.4079 18 6 1.9576 -9.7431 0.3120 19 6 2.6259 -10.8852 -0.4091 20 7 2.4771 -11.1579 -1.6730 21 6 3.2188 -12.2470 -1.9937 22 6 3.4400 -12.9706 -3.1659 23 7 4.2416 -14.0150 -3.1563 24 6 4.8624 -14.4213 -2.0614 25 6 4.7024 -13.7717 -0.8680 26 6 3.8679 -12.6608 -0.8139 27 7 3.4750 -11.7809 0.1662 28 1 3.7507 -11.7960 1.0962 29 6 1.1454 -4.8241 0.4581 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 -0.0005 32 1 3.3656 -3.6642 -1.7572 33 1 1.6191 -3.8126 -2.1407 34 1 3.5601 -5.9207 -1.2098 35 1 2.1000 -6.0999 -2.2198 36 1 3.3523 -8.2724 -0.4187 37 1 1.9035 -8.4797 -1.4318 38 1 0.8792 -9.9010 0.3226 39 1 2.3278 -9.6942 1.3361 40 1 2.9534 -12.6730 -4.0828 41 1 5.5088 -15.2851 -2.1102 42 1 5.2128 -14.1184 0.0184 43 1 0.1294 -4.6822 0.0899 44 1 1.1484 -4.9018 1.5453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970431770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = 58.041149 kcal Electronic energy + Delta-G solvation = -26275.275405 eV Core-core repulsion = 22421.398805 eV Total energy + Delta-G solvation = -3853.876600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.83272 -39.95132 -38.97665 -37.44727 -34.20804 -34.08165 -33.60341 -31.62861 -31.29405 -29.92331 -29.56395 -28.01227 -25.84145 -23.76043 -23.45697 -23.06683 -22.62640 -21.15792 -20.13598 -19.06287 -18.71714 -18.01661 -17.37650 -17.01233 -16.35491 -16.23635 -15.95527 -15.33115 -15.03682 -14.90386 -14.68079 -14.39772 -13.88172 -13.56589 -13.43061 -13.26405 -13.24372 -12.76148 -12.70195 -12.54582 -12.20409 -12.01016 -11.66635 -11.56954 -11.28219 -11.19031 -10.87038 -10.72841 -10.64349 -10.36120 -10.11871 -10.02535 -9.85718 -9.76113 -9.44397 -8.99157 -8.72289 -8.48724 -7.08743 -5.85544 -3.16455 0.32547 0.98921 2.19669 2.26743 2.65981 3.07502 3.39043 3.43912 3.44902 3.49050 3.55557 3.95805 4.12537 4.41571 4.49555 4.51643 4.60935 4.66215 4.75471 4.87321 4.95923 5.00871 5.17062 5.27249 5.29713 5.33975 5.50938 5.52669 5.57473 5.62054 5.66871 5.71023 5.87174 5.93307 6.10583 6.13868 6.18123 6.33727 6.48901 6.56276 6.71254 6.87089 7.27132 7.61440 7.63642 7.64506 8.19014 8.31800 9.43333 9.97087 10.31908 11.36481 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.001790 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.465437 B =15638.726347 C =16030.360384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.156 4.156 13 C 0.100 3.900 14 N -0.611 5.611 15 C 0.527 3.473 16 O -0.550 6.550 17 C -0.127 4.127 18 C -0.027 4.027 19 C 0.297 3.703 20 N -0.472 5.472 21 C -0.004 4.004 22 C 0.176 3.824 23 N -0.488 5.488 24 C 0.093 3.907 25 C -0.160 4.160 26 C 0.074 3.926 27 N -0.591 5.591 28 H 0.427 0.573 29 C 0.099 3.901 30 H 0.257 0.743 31 H 0.387 0.613 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.134 0.866 43 H 0.070 0.930 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.433 -27.484 -1.740 29.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.197 4.197 13 C -0.023 4.023 14 N -0.344 5.344 15 C 0.316 3.684 16 O -0.428 6.428 17 C -0.168 4.168 18 C -0.066 4.066 19 C 0.029 3.971 20 N -0.192 5.192 21 C -0.125 4.125 22 C 0.008 3.992 23 N -0.198 5.198 24 C -0.056 4.056 25 C -0.183 4.183 26 C -0.044 4.044 27 N -0.202 5.202 28 H 0.267 0.733 29 C -0.024 4.024 30 H 0.067 0.933 31 H 0.221 0.779 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.184 0.816 41 H 0.179 0.821 42 H 0.152 0.848 43 H 0.088 0.912 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.859 -27.590 -2.538 29.089 hybrid contribution 0.773 0.948 1.748 2.133 sum 9.632 -26.642 -0.791 28.341 Atomic orbital electron populations 1.69652 1.05150 1.26042 1.56857 1.24776 0.95540 0.97827 1.02460 0.86239 0.78526 0.83327 0.77878 1.21168 1.21629 1.21193 1.19153 0.91013 0.83785 1.43761 0.91037 1.42249 1.05831 0.99312 1.88150 1.21339 0.94145 0.85659 0.92888 0.91933 1.23427 1.02923 0.91230 1.02100 1.22141 0.95192 0.97665 0.87348 1.48453 1.50663 1.06256 1.29078 1.20068 0.81189 0.82654 0.84529 1.90707 1.41749 1.83803 1.26572 1.21509 1.02346 0.91341 1.01582 1.19962 1.01746 0.87188 0.97749 1.23846 0.91218 0.92793 0.89236 1.70402 1.23073 1.14534 1.11229 1.20255 1.00185 0.96941 0.95127 1.22225 0.92778 0.88595 0.95589 1.67733 1.08305 1.13757 1.29980 1.22165 0.97387 0.98912 0.87131 1.20735 1.01304 0.95424 1.00862 1.18989 1.00349 0.94843 0.90190 1.43060 1.40075 1.25049 1.11993 0.73339 1.22588 0.97560 0.83509 0.98764 0.93273 0.77908 0.90694 0.90446 0.91884 0.91725 0.88804 0.87324 0.87193 0.88746 0.81609 0.82134 0.84832 0.91193 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.52 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -17.00 5.28 -51.24 -0.27 -17.27 16 10 C 0.17 3.18 3.70 -65.67 -0.24 2.94 16 11 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 12 C -0.16 -2.42 6.64 -24.89 -0.17 -2.58 16 13 C 0.10 1.22 6.48 -3.06 -0.02 1.20 16 14 N -0.61 -8.68 3.32 -170.38 -0.57 -9.24 16 15 C 0.53 7.10 7.85 -10.98 -0.09 7.01 16 16 O -0.55 -9.15 16.24 5.56 0.09 -9.06 16 17 C -0.13 -1.19 4.83 -27.88 -0.13 -1.32 16 18 C -0.03 -0.22 5.13 -27.88 -0.14 -0.37 16 19 C 0.30 2.63 7.37 -154.66 -1.14 1.49 16 20 N -0.47 -5.20 11.21 -8.20 -0.09 -5.29 16 21 C 0.00 -0.04 7.28 -84.72 -0.62 -0.66 16 22 C 0.18 1.69 11.28 -17.15 -0.19 1.49 16 23 N -0.49 -4.65 10.33 -13.23 -0.14 -4.79 16 24 C 0.09 0.68 11.11 -17.89 -0.20 0.48 16 25 C -0.16 -1.09 10.09 -39.80 -0.40 -1.49 16 26 C 0.07 0.65 7.37 -84.05 -0.62 0.03 16 27 N -0.59 -4.18 6.21 -7.96 -0.05 -4.23 16 28 H 0.43 1.62 8.96 -40.82 -0.37 1.26 16 29 C 0.10 1.67 6.53 -2.41 -0.02 1.65 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.39 9.83 7.71 -40.82 -0.31 9.52 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.11 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.16 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.07 1.24 8.01 -51.93 -0.42 0.82 16 44 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -33.68 373.87 -10.04 -43.72 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.13 Total: 7.53 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -4.22 Total: 2.86 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -0.39 Total: -67.34 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.68 -10.04 -43.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970431770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.760 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds