Wall clock time and date at job start Tue Mar 31 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00155 * 2 1 4 4 H 1.48502 * 109.47190 * 239.99883 * 3 2 1 5 5 H 1.48500 * 109.47464 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46948 * 120.00593 * 3 2 1 7 7 C 1.38815 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00139 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00073 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.88286 * 37.42687 * 10 9 7 12 12 C 1.55156 * 111.00484 * 273.55088 * 10 9 7 13 13 C 1.54332 * 102.94237 * 206.38636 * 12 10 9 14 14 N 1.47022 * 107.26931 * 22.18988 * 13 12 10 15 15 C 1.34775 * 125.64623 * 181.03091 * 14 13 12 16 16 O 1.21280 * 120.00013 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99977 * 0.02562 * 15 14 13 18 18 C 1.52999 * 109.46824 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47131 * 180.02562 * 18 17 15 20 20 N 1.30156 * 124.94362 * 305.10613 * 19 18 17 21 21 C 1.35603 * 109.59344 * 179.97438 * 20 19 18 22 22 C 1.39522 * 134.57706 * 179.97438 * 21 20 19 23 23 N 1.31661 * 120.11958 * 179.97438 * 22 21 20 24 24 C 1.32253 * 122.38079 * 0.02562 * 23 22 21 25 25 C 1.36815 * 121.42166 * 0.02562 * 24 23 22 26 26 C 1.39043 * 118.91385 * 359.97438 * 25 24 23 27 27 N 1.36169 * 124.95089 * 124.99674 * 19 18 17 28 28 H 0.97008 * 126.33128 * 0.04940 * 27 19 18 29 29 C 1.47423 * 108.70374 * 1.28667 * 14 13 12 30 30 H 0.97002 * 119.99994 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99953 * 0.02562 * 9 7 2 32 32 H 1.08997 * 110.72137 * 88.02311 * 12 10 9 33 33 H 1.09003 * 110.71994 * 324.74260 * 12 10 9 34 34 H 1.09002 * 109.87843 * 262.77740 * 13 12 10 35 35 H 1.08994 * 110.01072 * 141.68302 * 13 12 10 36 36 H 1.08998 * 109.46585 * 60.00675 * 17 15 14 37 37 H 1.08997 * 109.47252 * 300.00566 * 17 15 14 38 38 H 1.08999 * 109.47472 * 60.00070 * 18 17 15 39 39 H 1.09003 * 109.47431 * 299.99655 * 18 17 15 40 40 H 1.07990 * 119.93901 * 0.02562 * 22 21 20 41 41 H 1.08004 * 119.29349 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.54742 * 179.72621 * 25 24 23 43 43 H 1.08998 * 110.36151 * 94.48295 * 29 14 13 44 44 H 1.08998 * 110.37137 * 216.80296 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0017 11 1 2.9530 -3.5893 0.6166 12 6 2.4125 -4.0930 -1.4478 13 6 2.5169 -5.6283 -1.3300 14 7 1.7457 -6.0285 -0.1440 15 6 1.6060 -7.2884 0.3137 16 8 0.9429 -7.5031 1.3062 17 6 2.2739 -8.4306 -0.4079 18 6 1.9576 -9.7431 0.3120 19 6 2.6259 -10.8852 -0.4091 20 7 2.4771 -11.1579 -1.6730 21 6 3.2188 -12.2470 -1.9937 22 6 3.4400 -12.9706 -3.1659 23 7 4.2416 -14.0150 -3.1563 24 6 4.8624 -14.4213 -2.0614 25 6 4.7024 -13.7717 -0.8680 26 6 3.8679 -12.6608 -0.8139 27 7 3.4750 -11.7809 0.1662 28 1 3.7507 -11.7960 1.0962 29 6 1.1454 -4.8241 0.4581 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 -0.0005 32 1 3.3656 -3.6642 -1.7572 33 1 1.6191 -3.8126 -2.1407 34 1 3.5601 -5.9207 -1.2098 35 1 2.1000 -6.0999 -2.2198 36 1 3.3523 -8.2724 -0.4187 37 1 1.9035 -8.4797 -1.4318 38 1 0.8792 -9.9010 0.3226 39 1 2.3278 -9.6942 1.3361 40 1 2.9534 -12.6730 -4.0828 41 1 5.5088 -15.2851 -2.1102 42 1 5.2128 -14.1184 0.0184 43 1 0.1294 -4.6822 0.0899 44 1 1.1484 -4.9018 1.5453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970431770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:29 Heat of formation + Delta-G solvation = 34.797976 kcal Electronic energy + Delta-G solvation = -26276.283304 eV Core-core repulsion = 22421.398805 eV Total energy + Delta-G solvation = -3854.884499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.44788 -41.09172 -39.60020 -38.73311 -35.91953 -34.84043 -34.27298 -33.29133 -31.93632 -31.07244 -30.57038 -29.36380 -26.85948 -25.38185 -24.24260 -23.96264 -23.52351 -21.85280 -21.58069 -20.13430 -19.30543 -19.26970 -18.69665 -18.02537 -17.51401 -16.89607 -16.77976 -16.47718 -16.32399 -15.80142 -15.52768 -15.41615 -15.18602 -14.76569 -14.51848 -14.45711 -14.13978 -14.03238 -13.60836 -13.36497 -13.24499 -13.11130 -13.02817 -12.97479 -12.62184 -12.35016 -12.28976 -12.13390 -11.91952 -11.75475 -11.59780 -11.31102 -10.96490 -10.92484 -10.62859 -10.05125 -9.66684 -9.34381 -9.04209 -7.94471 -5.24636 -0.26913 0.37093 1.49557 1.52226 1.54353 1.58344 1.59609 1.67880 2.02452 2.57825 2.87343 2.90632 3.33248 3.38986 3.51727 3.66126 3.73089 3.82996 3.91031 3.99507 4.04725 4.10492 4.14500 4.28414 4.31429 4.36564 4.46095 4.52627 4.54962 4.73077 4.76717 4.85569 4.86854 4.94423 5.02836 5.08018 5.21608 5.25810 5.26166 5.43897 5.54673 5.58685 6.23547 6.26098 6.54509 6.64447 7.03744 7.09998 7.32900 8.04989 8.28555 9.28562 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.001790 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.465437 B =15638.726347 C =16030.360384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.730 5.730 10 C 0.164 3.836 11 H 0.062 0.938 12 C -0.146 4.146 13 C 0.107 3.893 14 N -0.613 5.613 15 C 0.526 3.474 16 O -0.585 6.585 17 C -0.113 4.113 18 C -0.021 4.021 19 C 0.299 3.701 20 N -0.501 5.501 21 C -0.032 4.032 22 C 0.161 3.839 23 N -0.507 5.507 24 C 0.085 3.915 25 C -0.153 4.153 26 C 0.066 3.934 27 N -0.578 5.578 28 H 0.442 0.558 29 C 0.108 3.892 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.172 0.828 41 H 0.191 0.809 42 H 0.167 0.833 43 H 0.056 0.944 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.053 -29.343 -1.754 31.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.370 5.370 10 C 0.054 3.946 11 H 0.080 0.920 12 C -0.187 4.187 13 C -0.015 4.015 14 N -0.347 5.347 15 C 0.317 3.683 16 O -0.466 6.466 17 C -0.154 4.154 18 C -0.060 4.060 19 C 0.031 3.969 20 N -0.223 5.223 21 C -0.153 4.153 22 C -0.007 4.007 23 N -0.217 5.217 24 C -0.064 4.064 25 C -0.175 4.175 26 C -0.052 4.052 27 N -0.190 5.190 28 H 0.285 0.715 29 C -0.016 4.016 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.189 0.811 41 H 0.208 0.792 42 H 0.184 0.816 43 H 0.074 0.926 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.544 -29.505 -2.555 31.785 hybrid contribution -0.007 1.390 1.782 2.260 sum 11.537 -28.114 -0.773 30.399 Atomic orbital electron populations 1.69816 1.06688 1.26174 1.59258 1.25581 0.96334 1.01177 1.03606 0.85207 0.77144 0.79122 0.78232 1.20128 1.22537 1.20478 1.19565 0.91579 0.84757 1.41336 0.90090 1.42413 1.05446 1.00609 1.88502 1.21508 0.93811 0.84171 0.95061 0.91992 1.23220 1.02657 0.93888 0.98948 1.22215 0.96910 0.95010 0.87364 1.48522 1.50825 1.05779 1.29524 1.20795 0.80497 0.82929 0.84072 1.90695 1.43310 1.84241 1.28344 1.21460 1.03081 0.89736 1.01100 1.19898 1.01308 0.86491 0.98312 1.23795 0.91281 0.92995 0.88879 1.70337 1.24063 1.15392 1.12469 1.20481 1.01123 0.97455 0.96216 1.22376 0.93357 0.88982 0.95955 1.67750 1.08753 1.13903 1.31319 1.22728 0.97211 0.99626 0.86791 1.21082 1.00334 0.94238 1.01866 1.19262 1.00523 0.95480 0.89954 1.42962 1.39324 1.24182 1.12567 0.71487 1.22238 0.96787 0.84513 0.98050 0.94046 0.79407 0.89793 0.92076 0.88739 0.89411 0.86557 0.86733 0.88061 0.87308 0.81052 0.79247 0.81581 0.92578 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.28 13.06 21.65 0.28 -58.00 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 3 Si 0.97 44.85 29.55 68.60 2.03 46.87 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.24 -12.78 9.98 84.03 0.84 -11.94 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.73 -35.28 5.28 -316.03 -1.67 -36.94 16 10 C 0.16 6.05 3.70 46.46 0.17 6.22 16 11 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 12 C -0.15 -4.32 6.64 31.79 0.21 -4.11 16 13 C 0.11 2.30 6.48 86.73 0.56 2.87 16 14 N -0.61 -16.43 3.32 -811.36 -2.70 -19.13 16 15 C 0.53 13.30 7.85 87.66 0.69 13.99 16 16 O -0.59 -19.10 16.24 -3.03 -0.05 -19.15 16 17 C -0.11 -1.82 4.83 29.85 0.14 -1.67 16 18 C -0.02 -0.30 5.13 29.85 0.15 -0.15 16 19 C 0.30 4.73 7.37 137.87 1.02 5.75 16 20 N -0.50 -10.48 11.21 -179.84 -2.02 -12.50 16 21 C -0.03 -0.65 7.28 39.52 0.29 -0.36 16 22 C 0.16 3.02 11.28 85.03 0.96 3.98 16 23 N -0.51 -9.14 10.33 -195.76 -2.02 -11.16 16 24 C 0.09 1.06 11.11 84.30 0.94 1.99 16 25 C -0.15 -1.65 10.09 22.13 0.22 -1.43 16 26 C 0.07 1.02 7.37 39.10 0.29 1.31 16 27 N -0.58 -6.80 6.21 -179.10 -1.11 -7.91 16 28 H 0.44 2.08 8.96 -92.70 -0.83 1.25 16 29 C 0.11 3.68 6.53 86.93 0.57 4.25 16 30 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.37 19.71 7.71 -92.71 -0.72 18.99 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.10 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.11 1.26 8.10 -2.39 -0.02 1.24 16 40 H 0.17 2.69 8.06 -2.92 -0.02 2.67 16 41 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 43 H 0.06 2.05 8.01 -2.39 -0.02 2.03 16 44 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 Total: -1.00 -74.53 373.87 -0.24 -74.77 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.50 Total: 26.13 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 7.52 Total: 17.01 kcal Atomic # 7 Polarization: -136.40 SS G_CDS: -9.23 Total: -145.63 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.05 Total: -19.15 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -74.53 -0.24 -74.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970431770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.569 kcal (2) G-P(sol) polarization free energy of solvation -74.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds