Wall clock time and date at job start Tue Mar 31 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39968 * 120.31801 * 2 1 4 4 N 1.31501 * 120.10141 * 179.97438 * 3 2 1 5 5 C 1.33378 * 120.85678 * 0.02562 * 4 3 2 6 6 C 1.40808 * 132.47495 * 180.02562 * 5 4 3 7 7 C 1.46574 * 126.53986 * 359.97423 * 6 5 4 8 8 O 1.21716 * 120.00269 * 359.71516 * 7 6 5 9 9 N 1.34783 * 119.99907 * 179.71142 * 7 6 5 10 10 C 1.46500 * 119.99869 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47194 * 35.00352 * 10 9 7 12 12 C 1.52999 * 109.47087 * 274.99848 * 10 9 7 13 13 C 1.53003 * 109.47163 * 155.00347 * 10 9 7 14 14 C 1.53486 * 114.20850 * 180.02562 * 13 10 9 15 15 N 1.47064 * 87.98715 * 87.51930 * 14 13 10 16 16 C 1.36944 * 136.05968 * 207.08932 * 15 14 13 17 17 H 1.08003 * 119.99220 * 7.55219 * 16 15 14 18 18 C 1.38804 * 120.00270 * 187.55676 * 16 15 14 19 19 N 1.31616 * 120.00491 * 174.37770 * 18 16 15 20 20 Si 1.86810 * 119.99801 * 354.37977 * 18 16 15 21 21 H 1.48499 * 109.46858 * 174.95062 * 20 18 16 22 22 H 1.48498 * 109.46907 * 294.94544 * 20 18 16 23 23 H 1.48495 * 109.47036 * 54.94600 * 20 18 16 24 24 C 1.47066 * 87.88390 * 27.34185 * 15 14 13 25 25 C 1.40646 * 106.91697 * 179.71399 * 6 5 4 26 26 N 1.30701 * 108.72806 * 0.26199 * 25 6 5 27 27 N 1.36590 * 120.79886 * 0.17522 * 5 4 3 28 28 C 1.35753 * 120.32525 * 180.41720 * 2 1 3 29 29 H 1.09006 * 109.46986 * 89.99568 * 1 2 3 30 30 H 1.08992 * 109.46924 * 209.99405 * 1 2 3 31 31 H 1.08996 * 109.47119 * 329.99824 * 1 2 3 32 32 H 1.08005 * 119.94824 * 0.03282 * 3 2 1 33 33 H 0.96997 * 119.99750 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.47561 * 300.00057 * 12 10 9 35 35 H 1.09000 * 109.46986 * 60.00526 * 12 10 9 36 36 H 1.09004 * 109.47074 * 180.02562 * 12 10 9 37 37 H 1.08998 * 113.41116 * 46.79441 * 13 10 9 38 38 H 1.09003 * 113.46770 * 332.73878 * 14 13 10 39 39 H 1.09004 * 113.52153 * 202.31032 * 14 13 10 40 40 H 0.97003 * 119.99848 * 354.81683 * 19 18 16 41 41 H 1.08996 * 113.46631 * 87.44126 * 24 15 14 42 42 H 1.09001 * 113.46561 * 217.88042 * 24 15 14 43 43 H 1.08006 * 125.63428 * 180.22598 * 25 6 5 44 44 H 1.08003 * 120.41851 * 359.49127 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2083 0.0000 4 7 3.5286 1.2033 0.0005 5 6 4.2084 0.0557 0.0005 6 6 5.5865 -0.2331 0.0015 7 6 6.6821 0.7406 0.0022 8 8 6.4369 1.9328 -0.0032 9 7 7.9612 0.3157 0.0090 10 6 9.0563 1.2888 0.0103 11 1 8.7663 2.1614 0.5957 12 6 9.3600 1.7168 -1.4269 13 6 10.3035 0.6524 0.6272 14 6 11.5228 1.5830 0.6833 15 7 11.0296 2.0657 1.9819 16 6 11.1348 3.2214 2.7090 17 1 11.5971 4.0941 2.2718 18 6 10.6473 3.2712 4.0076 19 7 10.8461 4.3435 4.7446 20 14 9.7090 1.8164 4.7095 21 1 9.4048 2.0677 6.1411 22 1 8.4407 1.6364 3.9583 23 1 10.5354 0.5887 4.5870 24 6 10.3790 0.7587 2.1592 25 6 5.7111 -1.6340 0.0076 26 7 4.5153 -2.1616 0.0046 27 7 3.5553 -1.1440 -0.0036 28 6 2.1925 -1.1718 -0.0085 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 1.6779 2.1461 0.0005 33 1 8.1566 -0.6344 0.0129 34 1 9.6501 0.8443 -2.0123 35 1 8.4716 2.1702 -1.8664 36 1 10.1751 2.4405 -1.4260 37 1 10.5183 -0.3434 0.2396 38 1 11.5211 2.3479 -0.0933 39 1 12.4725 1.0521 0.7497 40 1 11.3967 5.0678 4.4083 41 1 11.0266 0.0097 2.6148 42 1 9.4028 0.8214 2.6401 43 1 6.6412 -2.1830 0.0133 44 1 1.6647 -2.1140 -0.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970512293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:56 Heat of formation + Delta-G solvation = 148.596392 kcal Electronic energy + Delta-G solvation = -27745.114928 eV Core-core repulsion = 23895.165099 eV Total energy + Delta-G solvation = -3849.949830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.75593 -39.68159 -38.75170 -38.05741 -34.78342 -34.47197 -33.06907 -32.27101 -30.74009 -29.57028 -27.73482 -27.35781 -25.40957 -25.16652 -24.08100 -23.07562 -22.34382 -21.30698 -20.15137 -19.23282 -18.57353 -17.56760 -17.32700 -16.90628 -16.54373 -16.05933 -15.73284 -15.07179 -14.57916 -14.43040 -14.26125 -13.97778 -13.87391 -13.75093 -13.37843 -13.31920 -13.10366 -12.97400 -12.89989 -12.70050 -12.12411 -11.88927 -11.80159 -11.37202 -11.34483 -11.15904 -10.87535 -10.48759 -10.20457 -10.11791 -10.09182 -9.79926 -9.51295 -9.09844 -9.02942 -8.81018 -8.68662 -8.19928 -7.05729 -6.18752 -3.12236 0.06488 0.41261 1.58349 1.92541 2.88195 3.35719 3.48287 3.50154 3.55174 3.70894 3.72689 3.79218 3.91652 4.21269 4.37669 4.69652 4.75400 4.80355 4.86046 4.90958 4.98187 5.00646 5.19462 5.20978 5.35862 5.41840 5.56644 5.60467 5.73144 5.83453 5.85696 5.95379 6.05356 6.06054 6.16987 6.28963 6.38396 6.41124 6.58237 6.63652 6.83069 6.96991 7.04240 7.22900 7.31075 7.87980 8.34310 8.65805 9.08292 9.60940 10.47378 11.31406 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015441 B = 0.003197 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.928266 B = 8756.895422 C = 9434.052391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.188 4.188 3 C 0.186 3.814 4 N -0.433 5.433 5 C 0.313 3.687 6 C -0.279 4.279 7 C 0.592 3.408 8 O -0.523 6.523 9 N -0.722 5.722 10 C 0.170 3.830 11 H 0.103 0.897 12 C -0.156 4.156 13 C -0.140 4.140 14 C 0.130 3.870 15 N -0.627 5.627 16 C -0.300 4.300 17 H 0.083 0.917 18 C -0.024 4.024 19 N -0.937 5.937 20 Si 1.068 2.932 21 H -0.297 1.297 22 H -0.292 1.292 23 H -0.288 1.288 24 C 0.099 3.901 25 C 0.127 3.873 26 N -0.312 5.312 27 N -0.305 5.305 28 C 0.157 3.843 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.184 0.816 33 H 0.391 0.609 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.039 0.961 40 H 0.260 0.740 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.206 0.794 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.158 -16.029 -14.217 29.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.194 4.194 3 C 0.003 3.997 4 N -0.142 5.142 5 C 0.081 3.919 6 C -0.296 4.296 7 C 0.378 3.622 8 O -0.399 6.399 9 N -0.373 5.373 10 C 0.066 3.934 11 H 0.120 0.880 12 C -0.214 4.214 13 C -0.160 4.160 14 C 0.003 3.997 15 N -0.356 5.356 16 C -0.426 4.426 17 H 0.100 0.900 18 C -0.223 4.223 19 N -0.579 5.579 20 Si 0.901 3.099 21 H -0.224 1.224 22 H -0.220 1.220 23 H -0.215 1.215 24 C -0.026 4.026 25 C -0.054 4.054 26 N -0.134 5.134 27 N -0.073 5.073 28 C 0.021 3.979 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.201 0.799 33 H 0.225 0.775 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.222 0.778 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.008 -15.891 -12.742 29.262 hybrid contribution 1.093 -0.130 -1.239 1.657 sum -19.916 -16.022 -13.982 29.134 Atomic orbital electron populations 1.20625 0.87372 1.04159 1.03377 1.20633 0.99216 0.92349 1.07195 1.23652 0.88990 0.98637 0.88447 1.68371 1.08443 1.23923 1.13491 1.20413 0.93215 0.81130 0.97157 1.19554 0.90367 0.93622 1.26042 1.16726 0.81546 0.87292 0.76600 1.90870 1.83784 1.16111 1.49114 1.45802 1.05246 1.09856 1.76429 1.20591 0.84154 0.92273 0.96366 0.87951 1.22107 1.02008 1.01162 0.96149 1.23201 0.96221 0.98848 0.97763 1.22359 0.93486 0.94056 0.89779 1.46017 1.59508 1.09888 1.20193 1.20137 1.39355 0.87454 0.95658 0.89967 1.25646 1.01358 1.03245 0.92033 1.70908 1.40909 1.07968 1.38132 0.83757 0.76184 0.74771 0.75237 1.22409 1.21982 1.21528 1.22819 0.97171 0.89214 0.93417 1.24151 0.96605 0.92381 0.92297 1.77571 0.96325 1.08292 1.31255 1.47004 1.06089 1.07946 1.46220 1.21936 0.79335 1.01242 0.95349 0.90223 0.90722 0.89996 0.79904 0.77531 0.93032 0.92481 0.91311 0.90504 0.93243 0.94324 0.93007 0.93792 0.92901 0.77799 0.80136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.21 10.03 36.01 0.36 0.15 16 2 C -0.19 -1.16 5.86 -104.86 -0.61 -1.78 16 3 C 0.19 1.64 10.97 -17.05 -0.19 1.46 16 4 N -0.43 -6.25 10.26 -12.00 -0.12 -6.37 16 5 C 0.31 4.63 7.74 -155.84 -1.21 3.42 16 6 C -0.28 -4.21 6.17 -104.66 -0.65 -4.86 16 7 C 0.59 10.53 7.75 -12.90 -0.10 10.43 16 8 O -0.52 -11.71 16.40 5.17 0.08 -11.62 16 9 N -0.72 -10.94 5.07 -55.14 -0.28 -11.21 16 10 C 0.17 2.98 2.43 -67.93 -0.16 2.81 16 11 H 0.10 2.35 7.36 -51.93 -0.38 1.96 16 12 C -0.16 -2.37 9.29 37.16 0.35 -2.03 16 13 C -0.14 -2.38 3.73 -89.97 -0.34 -2.72 16 14 C 0.13 2.55 8.08 -8.52 -0.07 2.48 16 15 N -0.63 -15.87 3.49 -184.63 -0.64 -16.52 16 16 C -0.30 -8.99 11.08 -15.06 -0.17 -9.16 16 17 H 0.08 2.59 8.06 -52.48 -0.42 2.16 16 18 C -0.02 -0.76 5.50 -17.43 -0.10 -0.86 16 19 N -0.94 -30.88 13.70 55.49 0.76 -30.12 16 20 Si 1.07 28.51 25.16 -169.99 -4.28 24.24 16 21 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 22 H -0.29 -7.67 6.51 56.52 0.37 -7.31 16 23 H -0.29 -7.06 6.20 56.52 0.35 -6.71 16 24 C 0.10 2.14 5.24 -8.38 -0.04 2.10 16 25 C 0.13 1.43 11.44 -17.12 -0.20 1.24 16 26 N -0.31 -3.74 12.58 30.77 0.39 -3.35 16 27 N -0.30 -3.61 3.86 -11.97 -0.05 -3.65 16 28 C 0.16 1.19 10.94 -16.45 -0.18 1.01 16 29 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.07 0.09 8.09 -51.93 -0.42 -0.33 16 31 H 0.08 0.11 8.10 -51.93 -0.42 -0.31 16 32 H 0.18 0.95 8.06 -52.48 -0.42 0.52 16 33 H 0.39 4.34 7.52 -40.82 -0.31 4.03 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.05 6.50 -51.93 -0.34 0.72 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.94 6.43 -51.93 -0.33 0.61 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 8.44 8.73 -40.82 -0.36 8.08 16 41 H 0.04 0.92 7.66 -51.93 -0.40 0.52 16 42 H 0.05 1.23 4.71 -51.93 -0.24 0.99 16 43 H 0.21 1.40 7.46 -52.48 -0.39 1.01 16 44 H 0.18 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -41.71 364.02 -7.81 -49.52 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.85 Total: -0.10 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -3.30 Total: 3.71 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: 0.05 Total: -71.23 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 28.51 SS G_CDS: -4.28 Total: 24.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -41.71 -7.81 -49.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970512293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.116 kcal (2) G-P(sol) polarization free energy of solvation -41.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds