Wall clock time and date at job start Tue Mar 31 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39965 * 120.31620 * 2 1 4 4 N 1.31508 * 120.10245 * 180.02562 * 3 2 1 5 5 C 1.33375 * 120.85185 * 0.02562 * 4 3 2 6 6 C 1.40808 * 132.47874 * 179.68635 * 5 4 3 7 7 C 1.46586 * 126.53672 * 0.03292 * 6 5 4 8 8 O 1.21715 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00100 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00065 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47170 * 325.00001 * 10 9 7 12 12 C 1.53003 * 109.47177 * 84.99791 * 10 9 7 13 13 C 1.52995 * 109.47309 * 204.99791 * 10 9 7 14 14 C 1.53942 * 113.74216 * 162.19903 * 13 10 9 15 15 N 1.47818 * 86.03256 * 222.08194 * 14 13 10 16 16 C 1.36937 * 134.45443 * 204.63890 * 15 14 13 17 17 H 1.08002 * 119.99873 * 182.58897 * 16 15 14 18 18 C 1.38810 * 120.00043 * 2.58968 * 16 15 14 19 19 N 1.31620 * 120.00395 * 353.41580 * 18 16 15 20 20 Si 1.86805 * 119.99874 * 173.41132 * 18 16 15 21 21 H 1.48502 * 109.47004 * 94.97385 * 20 18 16 22 22 H 1.48501 * 109.47164 * 214.97006 * 20 18 16 23 23 H 1.48490 * 109.47409 * 334.97405 * 20 18 16 24 24 C 1.47577 * 91.05445 * 24.55002 * 15 14 13 25 25 C 1.40638 * 106.92553 * 179.97438 * 6 5 4 26 26 N 1.30697 * 108.72574 * 0.34033 * 25 6 5 27 27 N 1.36597 * 120.80391 * 359.97438 * 5 4 3 28 28 C 1.35747 * 120.32428 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47603 * 89.99859 * 1 2 3 30 30 H 1.09008 * 109.46713 * 209.99690 * 1 2 3 31 31 H 1.09000 * 109.47218 * 329.99636 * 1 2 3 32 32 H 1.07993 * 119.95233 * 0.02562 * 3 2 1 33 33 H 0.96993 * 119.99873 * 359.97438 * 9 7 6 34 34 H 1.08994 * 109.47119 * 64.48591 * 12 10 9 35 35 H 1.09001 * 109.46961 * 184.48900 * 12 10 9 36 36 H 1.09006 * 109.46719 * 304.48668 * 12 10 9 37 37 H 1.09002 * 112.93974 * 293.79056 * 13 10 9 38 38 H 1.08992 * 113.77171 * 336.34269 * 14 13 10 39 39 H 1.08999 * 113.76871 * 107.75060 * 14 13 10 40 40 H 0.96997 * 120.00446 * 180.02562 * 19 18 16 41 41 H 1.08993 * 113.77320 * 221.15155 * 24 15 14 42 42 H 1.08996 * 113.87101 * 89.76103 * 24 15 14 43 43 H 1.08003 * 125.63929 * 180.14164 * 25 6 5 44 44 H 1.07999 * 120.42316 * 359.94381 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2135 1.2083 0.0000 4 7 3.5286 1.2033 -0.0005 5 6 4.2083 0.0558 -0.0015 6 6 5.5864 -0.2331 -0.0080 7 6 6.6822 0.7405 -0.0149 8 8 6.4369 1.9327 -0.0151 9 7 7.9612 0.3156 -0.0211 10 6 9.0563 1.2887 -0.0287 11 1 8.7656 2.1584 -0.6180 12 6 9.3618 1.7239 1.4060 13 6 10.3026 0.6492 -0.6439 14 6 11.3618 1.6691 -1.0997 15 7 11.5129 0.8210 -2.3009 16 6 12.5193 0.6094 -3.2051 17 1 12.3613 -0.0520 -4.0441 18 6 13.7427 1.2451 -3.0433 19 7 13.8950 2.1487 -2.0984 20 14 15.1729 0.8181 -4.1665 21 1 15.2212 1.7824 -5.2949 22 1 16.4428 0.8893 -3.4000 23 1 14.9918 -0.5567 -4.6978 24 6 10.1453 0.2925 -2.1332 25 6 5.7110 -1.6340 -0.0050 26 7 4.5153 -2.1616 -0.0048 27 7 3.5553 -1.1440 -0.0016 28 6 2.1924 -1.1717 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6779 2.1460 0.0004 33 1 8.1566 -0.6344 -0.0206 34 1 9.7287 0.8694 1.9745 35 1 10.1211 2.5059 1.3946 36 1 8.4531 2.1065 1.8709 37 1 10.7066 -0.1623 -0.0386 38 1 10.9569 2.6592 -1.3091 39 1 12.2476 1.6958 -0.4652 40 1 14.7497 2.5931 -1.9856 41 1 10.0615 -0.7777 -2.3222 42 1 9.3809 0.8761 -2.6463 43 1 6.6411 -2.1830 -0.0063 44 1 1.6646 -2.1140 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970512294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:00 Heat of formation + Delta-G solvation = 137.065623 kcal Electronic energy + Delta-G solvation = -27112.113547 eV Core-core repulsion = 23261.663706 eV Total energy + Delta-G solvation = -3850.449841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.79072 -39.54299 -38.60839 -37.73817 -34.80739 -34.49134 -33.10654 -32.06602 -30.74060 -29.58702 -27.44898 -27.33651 -25.28561 -24.77567 -24.13168 -23.32836 -22.37786 -21.16387 -20.11827 -19.30363 -18.61615 -17.57654 -16.99803 -16.66898 -16.57359 -15.81549 -15.65409 -14.74585 -14.51888 -14.47675 -14.15849 -13.99944 -13.89605 -13.74109 -13.46125 -13.29216 -13.01950 -12.94717 -12.74291 -12.21244 -11.96138 -11.83151 -11.47410 -11.38353 -11.29890 -11.15930 -10.84046 -10.58250 -10.28426 -10.16042 -9.91942 -9.83578 -9.73905 -9.49915 -9.34016 -8.72543 -8.65315 -8.22518 -6.81583 -5.71670 -3.02161 0.02067 0.37352 1.55466 1.90269 2.83376 3.35779 3.42737 3.45442 3.47589 3.49902 3.66460 3.78629 3.87607 4.16952 4.34569 4.50593 4.73760 4.76663 4.87631 4.94468 5.14305 5.19978 5.26221 5.32151 5.43105 5.50592 5.56017 5.63305 5.78209 5.83370 5.94376 6.02616 6.11933 6.20644 6.41324 6.47203 6.56733 6.70659 6.75462 6.94136 6.97452 7.25767 7.29533 7.45808 7.62027 7.87563 8.04159 8.61435 9.10509 9.76900 10.67306 11.46082 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.002226 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.527680 B =12577.457669 C =12897.283712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.189 4.189 3 C 0.185 3.815 4 N -0.434 5.434 5 C 0.311 3.689 6 C -0.280 4.280 7 C 0.593 3.407 8 O -0.532 6.532 9 N -0.718 5.718 10 C 0.155 3.845 11 H 0.087 0.913 12 C -0.157 4.157 13 C -0.146 4.146 14 C 0.176 3.824 15 N -0.613 5.613 16 C -0.221 4.221 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.126 3.874 25 C 0.128 3.872 26 N -0.312 5.312 27 N -0.305 5.305 28 C 0.158 3.842 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.183 0.817 33 H 0.394 0.606 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.253 0.747 41 H 0.040 0.960 42 H 0.033 0.967 43 H 0.207 0.793 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.447 -7.609 8.559 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.195 4.195 3 C 0.002 3.998 4 N -0.143 5.143 5 C 0.080 3.920 6 C -0.296 4.296 7 C 0.379 3.621 8 O -0.409 6.409 9 N -0.369 5.369 10 C 0.050 3.950 11 H 0.105 0.895 12 C -0.215 4.215 13 C -0.166 4.166 14 C 0.050 3.950 15 N -0.339 5.339 16 C -0.349 4.349 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.000 4.000 25 C -0.053 4.053 26 N -0.134 5.134 27 N -0.073 5.073 28 C 0.022 3.978 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.200 0.800 33 H 0.227 0.773 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.223 0.777 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -28.137 -7.178 8.413 30.233 hybrid contribution 0.843 -0.674 -0.732 1.304 sum -27.294 -7.851 7.682 29.422 Atomic orbital electron populations 1.20625 0.87395 1.04083 1.03448 1.20618 0.99203 0.92349 1.07329 1.23632 0.89015 0.98598 0.88557 1.68360 1.08400 1.23963 1.13622 1.20416 0.93223 0.81131 0.97270 1.19579 0.90349 0.93658 1.26026 1.16740 0.81632 0.87199 0.76497 1.90835 1.83940 1.16164 1.49959 1.45851 1.05048 1.10200 1.75759 1.21058 0.85319 0.91952 0.96650 0.89466 1.22110 1.01578 1.01515 0.96341 1.23824 0.95160 1.01298 0.96317 1.22229 0.93936 0.91245 0.87605 1.46058 1.09230 1.47965 1.30678 1.19026 0.89626 1.22685 1.03577 0.90373 1.24778 0.97814 0.98765 0.99180 1.69826 1.24097 1.28167 1.34726 0.86127 0.82305 0.77877 0.79619 1.21748 1.21622 1.20627 1.22529 0.88507 0.97014 0.91991 1.24195 0.96621 0.92439 0.92058 1.77598 0.96367 1.08229 1.31175 1.47023 1.06090 1.07979 1.46200 1.21944 0.79373 1.01257 0.95195 0.90182 0.90730 0.90057 0.79962 0.77280 0.92833 0.91279 0.92814 0.89362 0.95368 0.90897 0.93682 0.94167 0.94989 0.77699 0.80142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.14 10.03 36.01 0.36 0.22 16 2 C -0.19 -1.01 5.86 -104.87 -0.61 -1.62 16 3 C 0.19 1.42 10.97 -17.04 -0.19 1.24 16 4 N -0.43 -5.67 10.26 -12.00 -0.12 -5.79 16 5 C 0.31 4.26 7.74 -155.84 -1.21 3.05 16 6 C -0.28 -3.91 6.17 -104.65 -0.65 -4.56 16 7 C 0.59 9.61 7.75 -12.89 -0.10 9.51 16 8 O -0.53 -10.70 16.40 5.17 0.08 -10.61 16 9 N -0.72 -10.18 4.94 -55.14 -0.27 -10.45 16 10 C 0.15 2.53 2.28 -67.93 -0.16 2.38 16 11 H 0.09 1.66 7.49 -51.93 -0.39 1.27 16 12 C -0.16 -2.36 9.43 37.16 0.35 -2.01 16 13 C -0.15 -2.69 3.35 -89.70 -0.30 -2.99 16 14 C 0.18 4.17 7.03 -2.84 -0.02 4.15 16 15 N -0.61 -16.10 3.70 -177.73 -0.66 -16.75 16 16 C -0.22 -6.36 10.69 -15.06 -0.16 -6.52 16 17 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -27.80 11.43 55.49 0.63 -27.16 16 20 Si 0.91 22.53 29.56 -169.99 -5.02 17.50 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.13 2.61 8.38 -2.97 -0.02 2.59 16 25 C 0.13 1.39 11.44 -17.13 -0.20 1.19 16 26 N -0.31 -3.59 12.58 30.76 0.39 -3.21 16 27 N -0.30 -3.38 3.86 -11.97 -0.05 -3.43 16 28 C 0.16 1.09 10.94 -16.45 -0.18 0.91 16 29 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.07 0.03 8.09 -51.92 -0.42 -0.39 16 31 H 0.08 0.03 8.10 -51.93 -0.42 -0.39 16 32 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.39 4.40 7.52 -40.82 -0.31 4.10 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.03 0.70 8.04 -51.93 -0.42 0.28 16 39 H 0.07 1.89 7.20 -51.93 -0.37 1.52 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.21 1.41 7.46 -52.48 -0.39 1.02 16 44 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -38.96 374.72 -8.61 -47.57 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.07 Total: -0.49 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -3.17 Total: 7.18 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -0.08 Total: -66.80 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.96 -8.61 -47.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970512294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.637 kcal (2) G-P(sol) polarization free energy of solvation -38.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds