Wall clock time and date at job start Tue Mar 31 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30902 * 119.96189 * 2 1 4 4 C 1.34152 * 121.16423 * 179.97438 * 3 2 1 5 5 C 1.38708 * 132.25162 * 180.02562 * 4 3 2 6 6 C 1.38835 * 107.67990 * 179.97438 * 5 4 3 7 7 N 1.31292 * 108.99184 * 0.02562 * 6 5 4 8 8 N 1.37273 * 120.90315 * 0.02562 * 4 3 2 9 9 C 1.36070 * 119.97387 * 359.97438 * 8 4 3 10 10 C 1.38068 * 118.89072 * 359.97438 * 9 8 4 11 11 C 1.47603 * 120.50395 * 180.02562 * 10 9 8 12 12 O 1.21582 * 120.00069 * 186.08403 * 11 10 9 13 13 N 1.34772 * 119.99987 * 6.07647 * 11 10 9 14 14 C 1.46502 * 120.00240 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.46773 * 325.00193 * 14 13 11 16 16 C 1.53000 * 109.46966 * 85.00155 * 14 13 11 17 17 C 1.52993 * 109.47322 * 205.00489 * 14 13 11 18 18 C 1.53946 * 113.74348 * 162.10758 * 17 14 13 19 19 N 1.47816 * 86.03778 * 222.08569 * 18 17 14 20 20 C 1.36934 * 134.45501 * 204.64678 * 19 18 17 21 21 H 1.08004 * 120.00077 * 171.44014 * 20 19 18 22 22 C 1.38816 * 120.00316 * 351.44930 * 20 19 18 23 23 N 1.31627 * 119.99568 * 5.13255 * 22 20 19 24 24 Si 1.86793 * 120.00412 * 185.14181 * 22 20 19 25 25 H 1.48496 * 109.47417 * 94.96104 * 24 22 20 26 26 H 1.48497 * 109.47155 * 214.96756 * 24 22 20 27 27 H 1.48506 * 109.46990 * 334.96538 * 24 22 20 28 28 C 1.47579 * 91.05073 * 24.54716 * 19 18 17 29 29 H 1.08994 * 109.47096 * 96.80778 * 1 2 3 30 30 H 1.08995 * 109.47351 * 216.81554 * 1 2 3 31 31 H 1.09010 * 109.47094 * 336.81136 * 1 2 3 32 32 H 1.07999 * 126.16007 * 359.97438 * 5 4 3 33 33 H 1.08003 * 125.51077 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.55801 * 179.97438 * 9 8 4 35 35 H 0.97006 * 119.99910 * 0.02562 * 13 11 10 36 36 H 1.08998 * 109.46562 * 184.64101 * 16 14 13 37 37 H 1.08998 * 109.47046 * 304.63548 * 16 14 13 38 38 H 1.08994 * 109.47007 * 64.64408 * 16 14 13 39 39 H 1.09006 * 112.94728 * 293.69924 * 17 14 13 40 40 H 1.09003 * 113.76850 * 336.34629 * 18 17 14 41 41 H 1.08996 * 113.76939 * 107.74342 * 18 17 14 42 42 H 0.96999 * 119.99279 * 180.02562 * 23 22 20 43 43 H 1.09003 * 113.76716 * 221.15433 * 28 19 18 44 44 H 1.08997 * 113.87163 * 89.77018 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1341 0.0000 4 6 3.5020 1.1622 0.0005 5 6 4.4129 2.2083 0.0011 6 6 5.6874 1.6576 0.0020 7 7 5.5871 0.3485 0.0015 8 7 4.2316 -0.0006 0.0005 9 6 3.5944 -1.2029 0.0005 10 6 2.2139 -1.2263 0.0011 11 6 1.4864 -2.5105 0.0017 12 8 0.2757 -2.5234 -0.1094 13 7 2.1640 -3.6689 0.1253 14 6 1.4420 -4.9436 0.1253 15 1 0.4802 -4.8163 0.6223 16 6 1.2142 -5.4007 -1.3169 17 6 2.2655 -5.9962 0.8700 18 6 1.4484 -7.2239 1.3117 19 7 2.1957 -7.1354 2.5840 20 6 2.5265 -8.0304 3.5662 21 1 3.2109 -7.7428 4.3506 22 6 1.9823 -9.3074 3.5536 23 7 1.2290 -9.6917 2.5449 24 14 2.3187 -10.4801 4.9680 25 1 1.2094 -10.4002 5.9520 26 1 2.4199 -11.8672 4.4476 27 1 3.5946 -10.1052 5.6291 28 6 2.4441 -5.6966 2.3694 29 1 -0.3633 -0.1218 -1.0204 30 1 -0.3634 -0.8227 0.6158 31 1 -0.3634 0.9447 0.4047 32 1 4.1738 3.2615 0.0008 33 1 6.6120 2.2158 0.0023 34 1 4.1591 -2.1235 0.0001 35 1 3.1300 -3.6586 0.2142 36 1 0.6063 -6.3054 -1.3195 37 1 0.6992 -4.6153 -1.8700 38 1 2.1749 -5.6072 -1.7886 39 1 3.1948 -6.2483 0.3591 40 1 0.3812 -7.0274 1.4146 41 1 1.6629 -8.1245 0.7365 42 1 0.8485 -10.5839 2.5363 43 1 3.4523 -5.3801 2.6372 44 1 1.6712 -5.0490 2.7832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970668160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:20 Heat of formation + Delta-G solvation = 142.196552 kcal Electronic energy + Delta-G solvation = -27462.774482 eV Core-core repulsion = 23612.547135 eV Total energy + Delta-G solvation = -3850.227348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.70793 -40.29639 -38.59045 -37.77590 -35.27153 -34.50169 -32.47073 -32.17679 -31.00022 -29.44186 -28.30083 -27.54163 -25.32575 -24.75825 -24.08112 -23.03904 -21.90522 -21.55383 -20.73671 -19.44277 -18.87073 -17.88036 -16.82543 -16.70023 -16.54869 -15.98143 -15.60883 -15.09158 -14.82607 -14.58006 -14.50411 -14.08009 -13.88282 -13.79866 -13.58690 -13.23307 -13.14746 -12.50918 -12.35997 -12.17830 -12.04747 -11.69219 -11.67806 -11.60792 -11.45195 -11.30995 -10.93373 -10.73979 -10.44778 -10.40092 -10.11552 -9.90520 -9.80611 -9.74793 -9.49062 -9.03696 -8.82435 -8.30466 -6.91018 -5.83688 -3.14742 -0.05443 0.30512 1.57284 2.09637 2.62481 2.86168 3.19004 3.36276 3.41663 3.43462 3.44366 3.66575 3.74948 4.34598 4.41343 4.51744 4.77481 4.82122 5.01986 5.04886 5.08785 5.28532 5.34941 5.45494 5.46591 5.51723 5.54343 5.60197 5.72866 5.85091 5.89525 5.96832 6.06957 6.10308 6.19120 6.27411 6.35374 6.44523 6.56368 6.67747 6.98097 7.16351 7.25663 7.27531 7.35680 7.51372 7.92762 7.99278 8.99722 9.65847 10.55351 11.34441 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.002554 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.947571 B =10959.938821 C =11771.236575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.257 3.743 3 N -0.474 5.474 4 C 0.269 3.731 5 C -0.269 4.269 6 C 0.100 3.900 7 N -0.312 5.312 8 N -0.319 5.319 9 C 0.212 3.788 10 C -0.232 4.232 11 C 0.576 3.424 12 O -0.520 6.520 13 N -0.712 5.712 14 C 0.151 3.849 15 H 0.093 0.907 16 C -0.158 4.158 17 C -0.150 4.150 18 C 0.181 3.819 19 N -0.612 5.612 20 C -0.226 4.226 21 H 0.079 0.921 22 C -0.005 4.005 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.123 3.877 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.164 0.836 33 H 0.201 0.799 34 H 0.185 0.815 35 H 0.395 0.605 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.255 0.745 43 H 0.039 0.961 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 21.173 -9.337 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.187 5.187 4 C 0.043 3.957 5 C -0.299 4.299 6 C -0.080 4.080 7 N -0.135 5.135 8 N -0.089 5.089 9 C 0.074 3.926 10 C -0.243 4.243 11 C 0.361 3.639 12 O -0.397 6.397 13 N -0.362 5.362 14 C 0.047 3.953 15 H 0.111 0.889 16 C -0.217 4.217 17 C -0.170 4.170 18 C 0.055 3.945 19 N -0.338 5.338 20 C -0.354 4.354 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.003 4.003 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.096 0.904 32 H 0.182 0.818 33 H 0.218 0.782 34 H 0.202 0.798 35 H 0.229 0.771 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.884 20.685 -9.242 22.986 hybrid contribution 0.768 -0.643 0.886 1.337 sum 4.652 20.042 -8.356 22.207 Atomic orbital electron populations 1.21139 0.85638 1.04816 1.05130 1.22039 0.98313 0.85460 0.84918 1.68126 1.03661 1.28123 1.18771 1.20899 0.88283 0.87002 0.99480 1.21028 0.89569 0.98852 1.20456 1.23971 0.99101 0.90957 0.93943 1.77966 0.88804 1.15598 1.31146 1.47132 1.07908 1.06041 1.47822 1.22526 0.91894 0.88811 0.89354 1.20747 0.91613 0.97429 1.14489 1.17327 0.87021 0.82367 0.77204 1.90775 1.12790 1.86481 1.49665 1.46119 1.10705 1.06106 1.73302 1.21224 0.96600 0.80827 0.96606 0.88876 1.22118 1.01914 1.01835 0.95796 1.23924 1.00290 0.97218 0.95562 1.22141 0.93231 0.93096 0.86028 1.45959 1.62623 1.02522 1.22661 1.19012 1.21501 0.91784 1.03086 0.90283 1.24844 0.99320 0.97752 0.98327 1.69824 1.37404 1.19052 1.30202 0.86146 0.77745 0.80367 0.81810 1.21560 1.21654 1.20559 1.22558 0.97866 0.88378 0.91457 0.88810 0.86951 0.90445 0.81805 0.78202 0.79840 0.77062 0.90865 0.92639 0.92677 0.89271 0.95027 0.91268 0.93546 0.94265 0.94966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 8.91 36.01 0.32 -0.74 16 2 C 0.26 2.89 6.87 -81.73 -0.56 2.33 16 3 N -0.47 -5.76 10.37 -8.17 -0.08 -5.85 16 4 C 0.27 3.21 7.91 -155.32 -1.23 1.98 16 5 C -0.27 -2.58 10.91 -39.19 -0.43 -3.01 16 6 C 0.10 0.85 11.94 -17.56 -0.21 0.64 16 7 N -0.31 -3.47 12.65 30.49 0.39 -3.08 16 8 N -0.32 -3.64 3.88 -11.68 -0.05 -3.68 16 9 C 0.21 2.04 10.82 -15.73 -0.17 1.87 16 10 C -0.23 -2.45 5.88 -104.88 -0.62 -3.07 16 11 C 0.58 6.72 7.67 -12.44 -0.10 6.62 16 12 O -0.52 -7.28 13.11 5.29 0.07 -7.21 16 13 N -0.71 -7.75 4.90 -54.83 -0.27 -8.01 16 14 C 0.15 2.03 2.29 -67.93 -0.16 1.88 16 15 H 0.09 1.44 7.49 -51.93 -0.39 1.06 16 16 C -0.16 -1.93 9.43 37.16 0.35 -1.58 16 17 C -0.15 -2.44 3.35 -89.70 -0.30 -2.74 16 18 C 0.18 3.98 6.90 -2.84 -0.02 3.96 16 19 N -0.61 -15.17 3.70 -177.68 -0.66 -15.82 16 20 C -0.23 -6.26 10.69 -15.06 -0.16 -6.42 16 21 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 22 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 23 N -0.92 -26.75 11.57 55.49 0.64 -26.11 16 24 Si 0.91 21.87 29.56 -169.99 -5.02 16.85 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.12 2.35 8.38 -2.97 -0.02 2.33 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.11 1.21 5.93 -51.93 -0.31 0.90 16 31 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.20 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.18 1.19 6.49 -52.49 -0.34 0.85 16 35 H 0.39 3.36 6.71 -40.82 -0.27 3.09 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.03 0.72 8.04 -51.93 -0.42 0.31 16 41 H 0.07 1.68 7.46 -51.93 -0.39 1.29 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -33.92 367.99 -8.72 -42.64 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.89 Total: 0.97 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -3.40 Total: 3.77 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.03 Total: -62.56 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.07 Total: -7.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.92 -8.72 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970668160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.836 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds