Wall clock time and date at job start Tue Mar 31 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30899 * 119.96083 * 2 1 4 4 C 1.34158 * 121.16670 * 180.02562 * 3 2 1 5 5 C 1.38700 * 132.24949 * 180.02562 * 4 3 2 6 6 C 1.38847 * 107.67817 * 179.97438 * 5 4 3 7 7 N 1.31290 * 108.98696 * 359.97438 * 6 5 4 8 8 N 1.37270 * 120.90031 * 0.02562 * 4 3 2 9 9 C 1.36078 * 119.97433 * 359.74026 * 8 4 3 10 10 C 1.38067 * 118.88939 * 0.50645 * 9 8 4 11 11 C 1.47593 * 120.50052 * 179.77840 * 10 9 8 12 12 O 1.21583 * 120.00219 * 173.82119 * 11 10 9 13 13 N 1.34780 * 120.00389 * 353.81701 * 11 10 9 14 14 C 1.46495 * 120.00254 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.46929 * 35.00354 * 14 13 11 16 16 C 1.52997 * 109.47512 * 275.00024 * 14 13 11 17 17 C 1.53000 * 109.46948 * 154.99833 * 14 13 11 18 18 C 1.53498 * 114.20884 * 179.97438 * 17 14 13 19 19 N 1.47074 * 87.98567 * 87.52082 * 18 17 14 20 20 C 1.36928 * 136.05584 * 207.08687 * 19 18 17 21 21 H 1.07999 * 120.00511 * 358.85437 * 20 19 18 22 22 C 1.38820 * 119.99644 * 178.84645 * 20 19 18 23 23 N 1.31617 * 119.99665 * 175.40398 * 22 20 19 24 24 Si 1.86798 * 120.00153 * 355.40651 * 22 20 19 25 25 H 1.48493 * 109.47063 * 174.08589 * 24 22 20 26 26 H 1.48510 * 109.46904 * 294.08546 * 24 22 20 27 27 H 1.48498 * 109.47196 * 54.08336 * 24 22 20 28 28 C 1.47064 * 87.88121 * 27.34266 * 19 18 17 29 29 H 1.08994 * 109.46869 * 263.55565 * 1 2 3 30 30 H 1.08997 * 109.47663 * 23.56305 * 1 2 3 31 31 H 1.09004 * 109.46889 * 143.56447 * 1 2 3 32 32 H 1.08000 * 126.16542 * 359.93983 * 5 4 3 33 33 H 1.07998 * 125.50508 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.55221 * 180.28231 * 9 8 4 35 35 H 0.97003 * 119.99594 * 0.02562 * 13 11 10 36 36 H 1.08997 * 109.46734 * 59.99571 * 16 14 13 37 37 H 1.08994 * 109.47397 * 180.02562 * 16 14 13 38 38 H 1.09004 * 109.46845 * 300.00383 * 16 14 13 39 39 H 1.09003 * 113.41537 * 46.80146 * 17 14 13 40 40 H 1.09006 * 113.46796 * 332.74483 * 18 17 14 41 41 H 1.08993 * 113.52574 * 202.31082 * 18 17 14 42 42 H 0.96997 * 120.00246 * 354.87880 * 23 22 20 43 43 H 1.09005 * 113.46650 * 87.43893 * 28 19 18 44 44 H 1.08997 * 113.46851 * 217.87208 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1341 0.0000 4 6 3.5020 1.1623 -0.0005 5 6 4.4128 2.2084 -0.0002 6 6 5.6874 1.6577 -0.0005 7 7 5.5871 0.3487 -0.0004 8 7 4.2316 -0.0005 -0.0016 9 6 3.5944 -1.2029 0.0032 10 6 2.2140 -1.2263 -0.0016 11 6 1.4865 -2.5105 -0.0016 12 8 0.2757 -2.5233 0.1075 13 7 2.1644 -3.6691 -0.1226 14 6 1.4423 -4.9437 -0.1231 15 1 0.4817 -4.8168 -0.6225 16 6 1.2112 -5.3996 1.3190 17 6 2.2676 -5.9970 -0.8649 18 6 1.6085 -7.3818 -0.9302 19 7 0.9237 -6.9408 -2.1548 20 6 -0.2435 -7.2537 -2.7988 21 1 -0.8944 -8.0161 -2.3970 22 6 -0.5901 -6.5909 -3.9683 23 7 -1.6649 -6.9531 -4.6361 24 14 0.4689 -5.1851 -4.5941 25 1 -0.0289 -4.7434 -5.9216 26 1 0.4016 -4.0510 -3.6377 27 1 1.8758 -5.6433 -4.7203 28 6 2.0472 -6.0206 -2.3864 29 1 -0.3633 -0.1153 1.0211 30 1 -0.3634 0.9419 -0.4108 31 1 -0.3633 -0.8268 -0.6104 32 1 4.1736 3.2616 -0.0003 33 1 6.6118 2.2160 0.0001 34 1 4.1592 -2.1234 0.0070 35 1 3.1305 -3.6589 -0.2093 36 1 0.6233 -4.6491 1.8474 37 1 0.6743 -6.3482 1.3185 38 1 2.1718 -5.5264 1.8183 39 1 3.3159 -6.0150 -0.5666 40 1 0.9297 -7.5790 -0.1003 41 1 2.3167 -8.1933 -1.0971 42 1 -2.1731 -7.7293 -4.3531 43 1 2.8720 -6.4726 -2.9375 44 1 1.7424 -5.0582 -2.7974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970668161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:24 Heat of formation + Delta-G solvation = 155.939073 kcal Electronic energy + Delta-G solvation = -28132.359768 eV Core-core repulsion = 24282.728341 eV Total energy + Delta-G solvation = -3849.631427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.68811 -40.34098 -39.01845 -37.92243 -35.29283 -34.47933 -32.51476 -32.27845 -31.01333 -29.44009 -28.26061 -27.88275 -25.64317 -25.05887 -23.88093 -22.94642 -21.87274 -21.57150 -20.85257 -19.36134 -18.87967 -17.87963 -17.40249 -16.69096 -16.55334 -16.28005 -15.65144 -15.22327 -15.04671 -14.74784 -14.49271 -14.07527 -13.87894 -13.72126 -13.61299 -13.30020 -13.16770 -13.10692 -12.45510 -12.32962 -12.01509 -11.99427 -11.66967 -11.58870 -11.46908 -11.32894 -11.09789 -10.69313 -10.45682 -10.40358 -10.23410 -9.81372 -9.76905 -9.25042 -9.06451 -9.02674 -8.97922 -8.28434 -7.18784 -6.30462 -3.23575 -0.03696 0.33279 1.58432 2.11255 2.65593 2.85221 3.22714 3.37744 3.43155 3.47525 3.63776 3.66922 3.76457 4.35799 4.53117 4.58709 4.68320 4.78819 4.79219 4.89357 4.97355 5.05660 5.37686 5.41766 5.51203 5.52183 5.57445 5.57616 5.65816 5.76969 5.82388 5.92341 5.97240 6.09003 6.12923 6.15251 6.19079 6.21859 6.34700 6.41424 6.50473 6.80027 6.99317 7.06254 7.27874 7.37352 8.03324 8.23074 8.96819 9.49168 10.33420 11.21025 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.003400 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.501284 B = 8232.300169 C = 8499.055015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.259 3.741 3 N -0.474 5.474 4 C 0.270 3.730 5 C -0.269 4.269 6 C 0.100 3.900 7 N -0.314 5.314 8 N -0.319 5.319 9 C 0.210 3.790 10 C -0.230 4.230 11 C 0.575 3.425 12 O -0.510 6.510 13 N -0.717 5.717 14 C 0.166 3.834 15 H 0.108 0.892 16 C -0.157 4.157 17 C -0.145 4.145 18 C 0.132 3.868 19 N -0.626 5.626 20 C -0.303 4.303 21 H 0.083 0.917 22 C -0.022 4.022 23 N -0.935 5.935 24 Si 1.069 2.931 25 H -0.296 1.296 26 H -0.292 1.292 27 H -0.290 1.290 28 C 0.104 3.896 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.165 0.835 33 H 0.201 0.799 34 H 0.184 0.816 35 H 0.393 0.607 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.041 0.959 42 H 0.261 0.739 43 H 0.045 0.955 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.425 14.355 13.437 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.186 5.186 4 C 0.045 3.955 5 C -0.300 4.300 6 C -0.079 4.079 7 N -0.138 5.138 8 N -0.089 5.089 9 C 0.072 3.928 10 C -0.240 4.240 11 C 0.360 3.640 12 O -0.386 6.386 13 N -0.368 5.368 14 C 0.063 3.937 15 H 0.126 0.874 16 C -0.215 4.215 17 C -0.165 4.165 18 C 0.005 3.995 19 N -0.355 5.355 20 C -0.429 4.429 21 H 0.101 0.899 22 C -0.221 4.221 23 N -0.577 5.577 24 Si 0.902 3.098 25 H -0.224 1.224 26 H -0.220 1.220 27 H -0.218 1.218 28 C -0.021 4.021 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.182 0.818 33 H 0.218 0.782 34 H 0.201 0.799 35 H 0.227 0.773 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.886 15.286 12.198 23.985 hybrid contribution 0.739 -1.323 1.026 1.830 sum 14.625 13.962 13.224 24.160 Atomic orbital electron populations 1.21180 0.85528 1.05119 1.05183 1.22063 0.98390 0.85400 0.84673 1.68141 1.03635 1.28080 1.18771 1.20915 0.88293 0.86985 0.99346 1.21025 0.89556 0.98858 1.20537 1.23956 0.99077 0.90949 0.93962 1.77935 0.88825 1.15608 1.31391 1.47125 1.07905 1.06029 1.47856 1.22481 0.91819 0.88768 0.89749 1.20752 0.91646 0.97413 1.14203 1.17314 0.87073 0.82317 0.77332 1.90810 1.12675 1.86317 1.48781 1.46051 1.10404 1.06219 1.74081 1.20748 0.96879 0.79989 0.96082 0.87359 1.22115 1.01535 1.02224 0.95663 1.23237 0.98262 0.97355 0.97606 1.22334 0.93874 0.92511 0.90767 1.46068 1.17831 1.45741 1.25858 1.20162 0.94577 1.21432 1.06750 0.89913 1.25626 0.99714 1.03257 0.93514 1.70904 1.17674 1.27928 1.41216 0.83744 0.74515 0.76063 0.75476 1.22392 1.22032 1.21762 1.22805 0.91305 0.95066 0.92974 0.88727 0.90291 0.86755 0.81794 0.78223 0.79916 0.77301 0.92272 0.90867 0.92874 0.90368 0.93061 0.94133 0.92900 0.93772 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.93 36.01 0.32 -0.97 16 2 C 0.26 3.25 6.87 -81.73 -0.56 2.69 16 3 N -0.47 -6.21 10.37 -8.17 -0.08 -6.29 16 4 C 0.27 3.39 7.91 -155.32 -1.23 2.16 16 5 C -0.27 -2.71 10.91 -39.19 -0.43 -3.13 16 6 C 0.10 0.87 11.95 -17.56 -0.21 0.66 16 7 N -0.31 -3.53 12.65 30.49 0.39 -3.14 16 8 N -0.32 -3.76 3.88 -11.68 -0.05 -3.81 16 9 C 0.21 2.12 10.82 -15.73 -0.17 1.95 16 10 C -0.23 -2.70 5.88 -104.88 -0.62 -3.32 16 11 C 0.58 7.72 7.67 -12.44 -0.10 7.62 16 12 O -0.51 -8.41 13.10 5.29 0.07 -8.34 16 13 N -0.72 -8.60 5.03 -54.83 -0.28 -8.88 16 14 C 0.17 2.45 2.43 -67.93 -0.16 2.29 16 15 H 0.11 2.13 7.36 -51.93 -0.38 1.74 16 16 C -0.16 -1.97 9.29 37.16 0.35 -1.62 16 17 C -0.14 -2.16 3.73 -89.97 -0.34 -2.50 16 18 C 0.13 2.35 8.08 -8.51 -0.07 2.28 16 19 N -0.63 -14.70 3.49 -184.60 -0.64 -15.35 16 20 C -0.30 -8.60 11.09 -15.06 -0.17 -8.77 16 21 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 22 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 23 N -0.93 -29.66 13.70 55.49 0.76 -28.90 16 24 Si 1.07 27.09 25.03 -169.99 -4.26 22.83 16 25 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 26 H -0.29 -7.14 6.78 56.52 0.38 -6.76 16 27 H -0.29 -6.77 6.19 56.52 0.35 -6.42 16 28 C 0.10 2.06 5.35 -8.38 -0.04 2.01 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 1.52 5.90 -51.93 -0.31 1.21 16 32 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.20 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.18 1.19 6.49 -52.49 -0.34 0.85 16 35 H 0.39 3.34 6.71 -40.82 -0.27 3.07 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.95 6.49 -51.93 -0.34 0.62 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.88 6.43 -51.93 -0.33 0.54 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 43 H 0.04 0.85 7.98 -51.93 -0.41 0.44 16 44 H 0.05 1.02 4.19 -51.93 -0.22 0.80 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -35.97 357.05 -7.86 -43.83 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.63 Total: 2.07 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -3.52 Total: 0.59 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: 0.10 Total: -66.37 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.07 Total: -8.34 kcal Atomic # 14 Polarization: 27.09 SS G_CDS: -4.26 Total: 22.83 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.97 -7.86 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970668161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.772 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds