Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35349 * 125.68852 * 2 1 4 4 N 1.36164 * 107.13843 * 180.02562 * 3 2 1 5 5 C 1.36224 * 133.93034 * 179.37806 * 4 3 2 6 6 C 1.35480 * 120.52389 * 180.02562 * 5 4 3 7 7 N 1.32684 * 122.11580 * 359.95236 * 6 5 4 8 8 C 1.32295 * 121.19069 * 0.02562 * 7 6 5 9 9 C 1.47801 * 120.59361 * 179.97438 * 8 7 6 10 10 O 1.21563 * 120.00018 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00062 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00376 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46725 * 35.00314 * 12 11 9 14 14 C 1.52997 * 109.47188 * 275.00479 * 12 11 9 15 15 C 1.52992 * 109.47081 * 155.00022 * 12 11 9 16 16 C 1.53953 * 113.74647 * 278.74078 * 15 12 11 17 17 N 1.47803 * 86.03866 * 222.08719 * 16 15 12 18 18 C 1.36940 * 134.45480 * 204.64597 * 17 16 15 19 19 H 1.08004 * 120.00062 * 179.86839 * 18 17 16 20 20 C 1.38806 * 119.99897 * 359.86583 * 18 17 16 21 21 N 1.31618 * 120.00303 * 0.02562 * 20 18 17 22 22 Si 1.86812 * 119.99830 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47081 * 59.99985 * 22 20 18 24 24 H 1.48495 * 109.46849 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46925 * 299.99870 * 22 20 18 26 26 C 1.47580 * 91.05616 * 24.54814 * 17 16 15 27 27 C 1.37563 * 106.99742 * 359.60170 * 4 3 2 28 28 N 1.31858 * 108.10611 * 0.10386 * 27 4 3 29 29 H 1.09003 * 109.47209 * 270.57400 * 1 2 3 30 30 H 1.08997 * 109.47522 * 30.57451 * 1 2 3 31 31 H 1.09000 * 109.47040 * 150.57032 * 1 2 3 32 32 H 1.07999 * 126.43297 * 359.41352 * 3 2 1 33 33 H 1.08002 * 119.73629 * 359.97438 * 5 4 3 34 34 H 1.08001 * 118.94091 * 179.97438 * 6 5 4 35 35 H 0.97006 * 119.99702 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.47153 * 299.99573 * 14 12 11 37 37 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 38 38 H 1.09004 * 109.47261 * 59.99745 * 14 12 11 39 39 H 1.08997 * 112.94423 * 50.33745 * 15 12 11 40 40 H 1.08999 * 113.76379 * 336.35463 * 16 15 12 41 41 H 1.09004 * 113.76409 * 107.74717 * 16 15 12 42 42 H 0.96996 * 120.00162 * 180.02562 * 21 20 18 43 43 H 1.08999 * 113.77170 * 221.15419 * 26 17 16 44 44 H 1.09002 * 113.86789 * 89.76287 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2966 1.0993 0.0000 4 7 3.5875 0.6661 -0.0006 5 6 4.7956 1.2955 -0.0115 6 6 5.9450 0.5784 -0.0092 7 7 5.9488 -0.7483 0.0045 8 6 4.8190 -1.4366 0.0161 9 6 4.8385 -2.9144 0.0308 10 8 3.7939 -3.5360 0.0409 11 7 6.0145 -3.5728 0.0328 12 6 6.0340 -5.0375 0.0479 13 1 5.1947 -5.4180 -0.5343 14 6 5.9207 -5.5343 1.4906 15 6 7.3454 -5.5364 -0.5618 16 6 7.3451 -5.5570 -2.1012 17 7 8.0237 -6.8646 -1.9818 18 6 8.8540 -7.5918 -2.7923 19 1 9.2284 -8.5495 -2.4620 20 6 9.2145 -7.0981 -4.0386 21 7 8.7587 -5.9308 -4.4410 22 14 10.3465 -8.0905 -5.1446 23 1 9.7190 -9.4021 -5.4462 24 1 10.5759 -7.3493 -6.4107 25 1 11.6441 -8.3091 -4.4563 26 6 7.4496 -7.0706 -0.6379 27 6 3.5502 -0.7090 0.0082 28 7 2.2863 -1.0847 0.0116 29 1 -0.3634 0.0103 1.0276 30 1 -0.3634 0.8847 -0.5227 31 1 -0.3633 -0.8951 -0.5049 32 1 1.9651 2.1271 -0.0089 33 1 4.8373 2.3747 -0.0229 34 1 6.8887 1.1037 -0.0185 35 1 6.8481 -3.0767 0.0251 36 1 6.7600 -5.1538 2.0728 37 1 5.9347 -6.6241 1.5017 38 1 4.9863 -5.1788 1.9250 39 1 8.2241 -5.0579 -0.1295 40 1 6.3489 -5.6174 -2.5395 41 1 7.9628 -4.7796 -2.5510 42 1 9.0102 -5.5860 -5.3120 43 1 8.1504 -7.4994 0.0783 44 1 6.4842 -7.5766 -0.6436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970709529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = 128.639183 kcal Electronic energy + Delta-G solvation = -27371.810200 eV Core-core repulsion = 23520.994961 eV Total energy + Delta-G solvation = -3850.815239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.30198 -39.83202 -38.70551 -37.89333 -34.74733 -34.71311 -32.19958 -32.05868 -30.73734 -29.65841 -28.25125 -27.45434 -25.43570 -24.58681 -23.83364 -23.56706 -21.77279 -21.04858 -20.38534 -19.38378 -18.63829 -17.99646 -16.78395 -16.58641 -16.45578 -16.00034 -15.62936 -14.95820 -14.83565 -14.67294 -14.44914 -13.84145 -13.74885 -13.71576 -13.41581 -13.26836 -13.04099 -12.65992 -12.54520 -12.38332 -12.04839 -11.61885 -11.54504 -11.25890 -11.22015 -10.85589 -10.69184 -10.61893 -10.36039 -10.30105 -9.98723 -9.71610 -9.68547 -9.34337 -9.08102 -8.75259 -8.73593 -8.50210 -6.81072 -5.70475 -3.02635 -0.21861 0.88219 1.97629 2.43735 2.64328 2.98107 3.43347 3.47184 3.48571 3.53614 3.62069 3.77277 3.94829 4.25668 4.50325 4.69626 4.74010 4.83077 4.90979 5.16217 5.34456 5.36313 5.36480 5.38952 5.41500 5.59877 5.67848 5.72858 5.74914 5.87817 6.02857 6.10594 6.23128 6.31350 6.41539 6.42626 6.48074 6.65017 6.72558 6.86126 7.11687 7.30969 7.44152 7.54512 7.62833 7.73724 8.04339 8.33534 9.10558 9.76969 10.66909 11.46452 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.002578 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.337884 B =10857.419846 C =11295.684187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.058 3.942 3 C -0.084 4.084 4 N -0.355 5.355 5 C 0.030 3.970 6 C 0.032 3.968 7 N -0.425 5.425 8 C 0.185 3.815 9 C 0.570 3.430 10 O -0.500 6.500 11 N -0.694 5.694 12 C 0.150 3.850 13 H 0.091 0.909 14 C -0.159 4.159 15 C -0.146 4.146 16 C 0.170 3.830 17 N -0.613 5.613 18 C -0.222 4.222 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.131 3.869 27 C 0.195 3.805 28 N -0.431 5.431 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.189 0.811 33 H 0.175 0.825 34 H 0.186 0.814 35 H 0.409 0.591 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.253 0.747 43 H 0.044 0.956 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.903 19.520 12.971 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 C -0.218 4.218 4 N -0.029 5.029 5 C -0.095 4.095 6 C -0.109 4.109 7 N -0.140 5.140 8 C 0.020 3.980 9 C 0.351 3.649 10 O -0.372 6.372 11 N -0.345 5.345 12 C 0.046 3.954 13 H 0.109 0.891 14 C -0.217 4.217 15 C -0.166 4.166 16 C 0.045 3.955 17 N -0.339 5.339 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.004 3.996 27 C -0.052 4.052 28 N -0.151 5.151 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.206 0.794 33 H 0.193 0.807 34 H 0.203 0.797 35 H 0.245 0.755 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.881 17.955 12.674 24.524 hybrid contribution 0.582 1.337 -0.810 1.668 sum -10.300 19.292 11.864 24.880 Atomic orbital electron populations 1.20183 0.86258 1.03605 1.03028 1.21319 0.97412 0.87632 1.01180 1.22499 0.80285 1.01427 1.17562 1.42831 1.06317 1.09032 1.44741 1.22756 0.83133 1.00792 1.02852 1.22125 0.97721 0.89270 1.01745 1.68120 1.27335 1.08854 1.09668 1.22352 0.83822 0.95194 0.96681 1.17208 0.84964 0.84005 0.78697 1.90893 1.31667 1.66686 1.47952 1.45907 1.07959 1.07921 1.72722 1.21194 0.99945 0.77584 0.96681 0.89144 1.22140 1.01595 1.01747 0.96225 1.23826 0.95030 0.97917 0.99837 1.22303 0.95187 0.89472 0.88521 1.45989 1.52448 1.20286 1.15191 1.18975 1.19190 1.00511 0.96292 0.90350 1.24780 1.00850 0.97441 0.97463 1.69811 1.48082 1.18522 1.20423 0.86213 0.80495 0.79079 0.80050 1.21235 1.21623 1.21124 1.22490 0.96116 0.92224 0.88747 1.22497 0.94690 0.80225 1.07831 1.70595 0.97732 1.28499 1.18276 0.90465 0.90647 0.90132 0.79362 0.80736 0.79715 0.75500 0.92621 0.91233 0.92656 0.89240 0.95575 0.91001 0.93677 0.93744 0.94695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 36.00 0.38 -0.18 16 2 C 0.06 0.67 7.07 -82.87 -0.59 0.08 16 3 C -0.08 -0.77 11.70 -16.66 -0.19 -0.96 16 4 N -0.36 -3.82 2.95 -61.12 -0.18 -4.00 16 5 C 0.03 0.22 11.00 -16.59 -0.18 0.04 16 6 C 0.03 0.26 11.01 -18.17 -0.20 0.06 16 7 N -0.42 -5.13 9.67 -8.68 -0.08 -5.21 16 8 C 0.19 2.72 6.97 -80.54 -0.56 2.16 16 9 C 0.57 9.51 7.78 -12.35 -0.10 9.42 16 10 O -0.50 -9.88 15.89 5.31 0.08 -9.80 16 11 N -0.69 -10.58 5.07 -54.77 -0.28 -10.86 16 12 C 0.15 2.43 2.38 -67.94 -0.16 2.27 16 13 H 0.09 1.66 7.41 -51.93 -0.39 1.28 16 14 C -0.16 -2.20 9.31 37.16 0.35 -1.85 16 15 C -0.15 -2.69 3.47 -89.69 -0.31 -3.00 16 16 C 0.17 4.08 7.08 -2.84 -0.02 4.06 16 17 N -0.61 -16.01 3.70 -177.68 -0.66 -16.67 16 18 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 19 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -27.84 11.39 55.49 0.63 -27.21 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.13 2.67 7.64 -2.96 -0.02 2.65 16 27 C 0.20 2.87 7.66 -153.98 -1.18 1.69 16 28 N -0.43 -6.79 10.74 -7.53 -0.08 -6.87 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.19 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.18 0.49 8.06 -52.49 -0.42 0.06 16 34 H 0.19 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.41 5.64 7.98 -40.82 -0.33 5.31 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.03 0.66 7.99 -51.93 -0.41 0.25 16 41 H 0.07 1.89 7.16 -51.93 -0.37 1.52 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -37.29 373.43 -9.09 -46.38 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.08 Total: 1.56 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -3.05 Total: 9.57 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -0.65 Total: -70.82 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.29 -9.09 -46.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970709529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.023 kcal (2) G-P(sol) polarization free energy of solvation -37.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds