Wall clock time and date at job start Tue Mar 31 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35342 * 125.69666 * 2 1 4 4 N 1.36165 * 107.14429 * 180.02562 * 3 2 1 5 5 C 1.36220 * 133.92337 * 180.02562 * 4 3 2 6 6 C 1.35487 * 120.51845 * 179.97438 * 5 4 3 7 7 N 1.32685 * 122.11309 * 359.89916 * 6 5 4 8 8 C 1.32296 * 121.19212 * 0.31999 * 7 6 5 9 9 C 1.47804 * 120.59018 * 179.89525 * 8 7 6 10 10 O 1.21562 * 119.99742 * 179.71793 * 9 8 7 11 11 N 1.34779 * 119.99927 * 359.70956 * 9 8 7 12 12 C 1.46498 * 119.99683 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47037 * 325.00179 * 12 11 9 14 14 C 1.52997 * 109.47442 * 85.00303 * 12 11 9 15 15 C 1.53004 * 109.47052 * 205.00617 * 12 11 9 16 16 C 1.53497 * 114.20756 * 180.02562 * 15 12 11 17 17 N 1.47070 * 87.98301 * 220.34168 * 16 15 12 18 18 C 1.36932 * 136.05620 * 207.08686 * 17 16 15 19 19 H 1.08006 * 120.00205 * 7.81892 * 18 17 16 20 20 C 1.38809 * 120.00281 * 187.82655 * 18 17 16 21 21 N 1.31616 * 120.00068 * 195.17204 * 20 18 17 22 22 Si 1.86802 * 119.99918 * 15.16359 * 20 18 17 23 23 H 1.48504 * 109.47042 * 270.00682 * 22 20 18 24 24 H 1.48499 * 109.47021 * 30.00157 * 22 20 18 25 25 H 1.48492 * 109.47106 * 150.00508 * 22 20 18 26 26 C 1.47068 * 87.88415 * 27.33811 * 17 16 15 27 27 C 1.37559 * 106.99345 * 359.97438 * 4 3 2 28 28 N 1.31849 * 108.10736 * 0.02562 * 27 4 3 29 29 H 1.08997 * 109.47391 * 269.97871 * 1 2 3 30 30 H 1.09002 * 109.46898 * 29.97506 * 1 2 3 31 31 H 1.09002 * 109.47377 * 149.97373 * 1 2 3 32 32 H 1.08001 * 126.42381 * 359.97126 * 3 2 1 33 33 H 1.07998 * 119.74201 * 359.97438 * 5 4 3 34 34 H 1.07998 * 118.93925 * 179.97438 * 6 5 4 35 35 H 0.96997 * 120.00003 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.46904 * 59.99183 * 14 12 11 37 37 H 1.08993 * 109.47359 * 180.02562 * 14 12 11 38 38 H 1.08999 * 109.46774 * 299.99974 * 14 12 11 39 39 H 1.09005 * 113.40728 * 313.19431 * 15 12 11 40 40 H 1.08996 * 113.46841 * 105.55693 * 16 15 12 41 41 H 1.08998 * 113.51535 * 335.12668 * 16 15 12 42 42 H 0.96995 * 120.00585 * 354.89801 * 21 20 18 43 43 H 1.09005 * 113.46482 * 87.44223 * 26 17 16 44 44 H 1.09000 * 113.46807 * 217.87726 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0991 0.0000 4 7 3.5876 0.6659 -0.0006 5 6 4.7956 1.2954 -0.0004 6 6 5.9451 0.5783 -0.0006 7 7 5.9487 -0.7486 0.0010 8 6 4.8189 -1.4368 -0.0035 9 6 4.8385 -2.9147 -0.0039 10 8 3.7938 -3.5364 -0.0028 11 7 6.0145 -3.5731 -0.0058 12 6 6.0338 -5.0379 -0.0068 13 1 5.1975 -5.4128 0.5833 14 6 5.9133 -5.5486 -1.4440 15 6 7.3485 -5.5311 0.6011 16 6 7.4838 -7.0592 0.6529 17 7 8.0889 -6.9084 1.9849 18 6 8.9733 -7.6185 2.7521 19 1 9.4904 -8.4690 2.3328 20 6 9.2053 -7.2454 4.0688 21 7 10.2509 -7.7192 4.7126 22 14 8.0336 -6.0706 4.9270 23 1 8.4878 -4.6733 4.7117 24 1 6.6676 -6.2385 4.3691 25 1 8.0138 -6.3662 6.3820 26 6 7.3212 -5.6628 2.1327 27 6 3.5502 -0.7092 -0.0003 28 7 2.2863 -1.0847 -0.0002 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.9651 2.1270 -0.0004 33 1 4.8374 2.3746 -0.0001 34 1 6.8888 1.1036 -0.0009 35 1 6.8480 -3.0770 -0.0064 36 1 6.7495 -5.1737 -2.0341 37 1 5.9272 -6.6385 -1.4447 38 1 4.9767 -5.1973 -1.8770 39 1 8.2264 -5.0180 0.2086 40 1 8.1703 -7.4597 -0.0930 41 1 6.5266 -7.5803 0.6675 42 1 10.8178 -8.3853 4.2934 43 1 6.3207 -5.8150 2.5375 44 1 7.8692 -4.8736 2.6475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970709530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:57 Heat of formation + Delta-G solvation = 134.912044 kcal Electronic energy + Delta-G solvation = -27483.054959 eV Core-core repulsion = 23632.511732 eV Total energy + Delta-G solvation = -3850.543228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.39980 -40.02993 -38.92518 -38.31368 -34.99627 -34.82824 -32.40789 -32.18762 -30.97711 -29.82536 -28.34871 -27.69893 -25.64714 -25.01031 -23.79205 -23.58807 -21.67506 -21.07886 -20.51172 -19.60449 -18.76152 -18.25259 -17.41234 -16.71813 -16.67507 -16.16272 -15.78101 -15.14462 -15.04702 -14.84366 -14.59979 -13.94983 -13.91587 -13.74362 -13.58617 -13.39519 -13.22640 -12.99529 -12.73818 -12.62043 -12.21206 -11.85355 -11.76612 -11.65791 -11.43562 -10.89373 -10.74524 -10.65609 -10.46481 -10.33731 -10.03781 -9.89085 -9.43777 -9.17940 -9.12487 -8.95387 -8.65091 -8.60090 -7.13101 -6.26448 -3.18044 -0.32876 0.78405 1.87773 2.33674 2.52579 2.83962 3.40704 3.45946 3.51272 3.54266 3.65214 3.67544 3.84621 4.15834 4.58957 4.63509 4.65455 4.72653 4.76162 4.82410 4.97958 5.17687 5.28698 5.30914 5.33068 5.48335 5.52266 5.59788 5.62825 5.66734 5.81478 5.92936 6.07107 6.14497 6.22166 6.30583 6.32253 6.34569 6.40038 6.45934 6.62719 6.98783 6.99909 7.18728 7.44348 7.57248 8.17328 8.27938 9.01729 9.55318 10.42647 11.23607 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.002846 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.626712 B = 9836.474854 C =10193.877730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.059 3.941 3 C -0.083 4.083 4 N -0.356 5.356 5 C 0.033 3.967 6 C 0.031 3.969 7 N -0.425 5.425 8 C 0.183 3.817 9 C 0.570 3.430 10 O -0.497 6.497 11 N -0.698 5.698 12 C 0.152 3.848 13 H 0.093 0.907 14 C -0.159 4.159 15 C -0.138 4.138 16 C 0.131 3.869 17 N -0.625 5.625 18 C -0.303 4.303 19 H 0.082 0.918 20 C -0.024 4.024 21 N -0.933 5.933 22 Si 1.061 2.939 23 H -0.294 1.294 24 H -0.281 1.281 25 H -0.296 1.296 26 C 0.107 3.893 27 C 0.195 3.805 28 N -0.431 5.431 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.190 0.810 33 H 0.176 0.824 34 H 0.186 0.814 35 H 0.410 0.590 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.047 0.953 41 H 0.038 0.962 42 H 0.261 0.739 43 H 0.046 0.954 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 23.372 -14.215 31.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.217 4.217 4 N -0.030 5.030 5 C -0.092 4.092 6 C -0.110 4.110 7 N -0.140 5.140 8 C 0.017 3.983 9 C 0.352 3.648 10 O -0.369 6.369 11 N -0.349 5.349 12 C 0.047 3.953 13 H 0.111 0.889 14 C -0.217 4.217 15 C -0.158 4.158 16 C 0.004 3.996 17 N -0.353 5.353 18 C -0.429 4.429 19 H 0.099 0.901 20 C -0.223 4.223 21 N -0.576 5.576 22 Si 0.892 3.108 23 H -0.221 1.221 24 H -0.207 1.207 25 H -0.223 1.223 26 C -0.018 4.018 27 C -0.053 4.053 28 N -0.151 5.151 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.207 0.793 33 H 0.193 0.807 34 H 0.203 0.797 35 H 0.245 0.755 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.255 22.536 -12.639 30.006 hybrid contribution 0.271 0.957 -1.296 1.634 sum -14.984 23.493 -13.935 31.155 Atomic orbital electron populations 1.20191 0.86192 1.03541 1.03192 1.21328 0.97441 0.87602 1.01067 1.22518 0.80244 1.01480 1.17411 1.42836 1.06337 1.09022 1.44761 1.22776 0.83115 1.00848 1.02503 1.22122 0.97760 0.89211 1.01916 1.68105 1.27333 1.08935 1.09636 1.22296 0.83891 0.95085 0.97035 1.17213 0.84886 0.84078 0.78625 1.90902 1.31613 1.66708 1.47684 1.45925 1.08089 1.07810 1.73126 1.21117 0.99261 0.77705 0.97170 0.88919 1.22125 1.01848 1.01844 0.95875 1.23537 0.95846 0.98810 0.97630 1.22287 0.96132 0.91712 0.89471 1.46192 1.48099 1.24191 1.16818 1.20131 1.15555 1.13163 0.94080 0.90058 1.25752 1.00227 1.03195 0.93137 1.70900 1.14166 1.30864 1.41627 0.83796 0.75926 0.75273 0.75788 1.22150 1.20738 1.22306 1.22750 0.95650 0.90287 0.93151 1.22475 0.94669 0.80241 1.07889 1.70590 0.97713 1.28541 1.18278 0.90348 0.90620 0.90153 0.79293 0.80659 0.79669 0.75452 0.92429 0.91065 0.92418 0.88232 0.93463 0.94433 0.92901 0.93672 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.42 36.00 0.38 -0.13 16 2 C 0.06 0.63 7.07 -82.87 -0.59 0.04 16 3 C -0.08 -0.69 11.70 -16.66 -0.19 -0.89 16 4 N -0.36 -3.52 2.95 -61.12 -0.18 -3.70 16 5 C 0.03 0.22 11.00 -16.59 -0.18 0.03 16 6 C 0.03 0.22 11.01 -18.17 -0.20 0.02 16 7 N -0.42 -4.66 9.67 -8.68 -0.08 -4.74 16 8 C 0.18 2.48 6.97 -80.53 -0.56 1.92 16 9 C 0.57 8.77 7.78 -12.35 -0.10 8.68 16 10 O -0.50 -9.19 15.89 5.31 0.08 -9.10 16 11 N -0.70 -9.62 5.07 -54.76 -0.28 -9.89 16 12 C 0.15 2.23 2.47 -67.93 -0.17 2.07 16 13 H 0.09 1.54 7.32 -51.93 -0.38 1.16 16 14 C -0.16 -2.02 9.29 37.16 0.35 -1.67 16 15 C -0.14 -2.33 3.67 -89.97 -0.33 -2.66 16 16 C 0.13 2.55 7.33 -8.50 -0.06 2.49 16 17 N -0.63 -15.61 3.62 -184.59 -0.67 -16.28 16 18 C -0.30 -8.88 11.03 -15.06 -0.17 -9.04 16 19 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 20 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 21 N -0.93 -29.92 13.70 55.49 0.76 -29.16 16 22 Si 1.06 27.48 25.50 -169.99 -4.34 23.14 16 23 H -0.29 -7.28 6.97 56.52 0.39 -6.89 16 24 H -0.28 -6.88 5.66 56.52 0.32 -6.56 16 25 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 26 C 0.11 2.30 5.18 -8.37 -0.04 2.26 16 27 C 0.19 2.68 7.66 -153.99 -1.18 1.50 16 28 N -0.43 -6.40 10.74 -7.53 -0.08 -6.48 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.18 0.35 8.06 -52.49 -0.42 -0.07 16 34 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.41 4.98 7.98 -40.82 -0.33 4.65 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.26 8.23 8.73 -40.82 -0.36 7.88 16 43 H 0.05 0.99 6.81 -51.93 -0.35 0.64 16 44 H 0.05 1.12 6.22 -51.93 -0.32 0.79 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -38.43 366.83 -8.48 -46.92 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.08 Total: -0.01 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -3.15 Total: 3.78 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -0.53 Total: -70.25 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 27.48 SS G_CDS: -4.34 Total: 23.14 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.43 -8.48 -46.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970709530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.828 kcal (2) G-P(sol) polarization free energy of solvation -38.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds