Wall clock time and date at job start Tue Mar 31 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38498 * 125.47909 * 2 1 4 4 C 1.39070 * 107.66972 * 179.97438 * 3 2 1 5 5 N 1.33701 * 132.56153 * 179.97438 * 4 3 2 6 6 C 1.31139 * 121.18768 * 179.97438 * 5 4 3 7 7 C 1.50701 * 119.76999 * 179.97438 * 6 5 4 8 8 C 1.40139 * 120.46171 * 359.75725 * 6 5 4 9 9 C 1.36884 * 119.25799 * 0.49351 * 8 6 5 10 10 C 1.47495 * 120.61233 * 179.78442 * 9 8 6 11 11 O 1.21589 * 120.00059 * 186.82541 * 10 9 8 12 12 N 1.34781 * 119.99983 * 6.82021 * 10 9 8 13 13 C 1.47017 * 125.64505 * 354.38461 * 12 10 9 14 14 C 1.54325 * 107.26901 * 181.07457 * 13 12 10 15 15 C 1.55443 * 102.96967 * 22.19012 * 14 13 12 16 16 H 1.09005 * 111.01411 * 82.52377 * 15 14 13 17 17 N 1.46499 * 111.11785 * 206.46254 * 15 14 13 18 18 C 1.36941 * 119.99887 * 198.55155 * 17 15 14 19 19 H 1.08000 * 119.99765 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99852 * 179.97438 * 18 17 15 21 21 N 1.31623 * 120.00036 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00031 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47543 * 89.99796 * 22 20 18 24 24 H 1.48501 * 109.47054 * 209.99361 * 22 20 18 25 25 H 1.48500 * 109.47412 * 329.99408 * 22 20 18 26 26 C 1.47420 * 125.64863 * 174.39861 * 12 10 9 27 27 N 1.37292 * 106.80264 * 359.97438 * 4 3 2 28 28 N 1.31529 * 125.47919 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47401 * 90.00578 * 1 2 3 30 30 H 1.08997 * 109.47421 * 210.00275 * 1 2 3 31 31 H 1.08999 * 109.47158 * 330.00840 * 1 2 3 32 32 H 1.08007 * 126.17090 * 359.95485 * 3 2 1 33 33 H 1.09001 * 109.47032 * 90.00033 * 7 6 5 34 34 H 1.08998 * 109.47419 * 210.00226 * 7 6 5 35 35 H 1.08999 * 109.47008 * 330.00551 * 7 6 5 36 36 H 1.08001 * 120.37221 * 180.27776 * 8 6 5 37 37 H 1.09002 * 109.88398 * 300.48793 * 13 12 10 38 38 H 1.09001 * 109.88868 * 61.65912 * 13 12 10 39 39 H 1.09000 * 110.72330 * 140.55386 * 14 13 12 40 40 H 1.09003 * 110.71966 * 263.82610 * 14 13 12 41 41 H 0.96993 * 120.00050 * 18.55951 * 17 15 14 42 42 H 0.96998 * 119.99953 * 180.02562 * 21 20 18 43 43 H 1.08997 * 110.36973 * 274.69821 * 26 12 10 44 44 H 1.09000 * 110.36811 * 36.90612 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3108 1.1278 0.0000 4 6 3.6349 0.7025 0.0006 5 7 4.7971 1.3635 0.0004 6 6 5.9420 0.7240 0.0016 7 6 7.2331 1.5013 0.0008 8 6 5.9733 -0.6770 0.0082 9 6 4.7943 -1.3725 0.0032 10 6 4.7924 -2.8475 0.0051 11 8 3.7467 -3.4542 -0.1245 12 7 5.9498 -3.5227 0.1506 13 6 7.2912 -2.9230 0.1992 14 6 8.3041 -4.0779 0.3475 15 6 7.5175 -5.3038 -0.1951 16 1 7.5639 -5.3476 -1.2832 17 7 8.0063 -6.5501 0.3999 18 6 7.7296 -7.7497 -0.1997 19 1 7.1513 -7.7770 -1.1114 20 6 8.1933 -8.9306 0.3637 21 7 7.9277 -10.0836 -0.2129 22 14 9.1941 -8.8832 1.9402 23 1 8.2821 -8.9748 3.1086 24 1 10.1405 -10.0275 1.9602 25 1 9.9555 -7.6100 2.0052 26 6 6.0802 -4.9848 0.2868 27 7 3.6108 -0.6702 0.0015 28 7 2.2704 -1.0711 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.9708 2.1530 -0.0007 33 1 7.5442 1.6901 1.0282 34 1 8.0035 0.9255 -0.5121 35 1 7.0855 2.4504 -0.5144 36 1 6.9170 -1.2021 0.0137 37 1 7.4861 -2.3752 -0.7228 38 1 7.3665 -2.2518 1.0547 39 1 9.1923 -3.8918 -0.2564 40 1 8.5718 -4.2241 1.3940 41 1 8.5259 -6.5255 1.2185 42 1 8.2514 -10.9087 0.1810 43 1 5.9546 -5.2814 1.3281 44 1 5.3480 -5.4912 -0.3420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970743668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:20 Heat of formation + Delta-G solvation = 131.629475 kcal Electronic energy + Delta-G solvation = -27696.405092 eV Core-core repulsion = 23845.719522 eV Total energy + Delta-G solvation = -3850.685571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59194 -40.24569 -38.58463 -37.64888 -34.74952 -34.36905 -32.96624 -31.80997 -30.72886 -30.20520 -28.94735 -28.29542 -27.36236 -25.62601 -23.50029 -22.89599 -22.47063 -21.09553 -20.42997 -19.67735 -18.35068 -17.96458 -17.66331 -16.71160 -16.57903 -16.12672 -15.53456 -15.12629 -14.71951 -14.32104 -14.26149 -14.18074 -13.91258 -13.59426 -13.43986 -13.37123 -13.21893 -12.93218 -12.81711 -12.67154 -12.59664 -12.52001 -11.93195 -11.87264 -11.38487 -11.23774 -11.20570 -10.97686 -10.86576 -10.67622 -10.48661 -10.19451 -9.80944 -9.72537 -9.47340 -9.15851 -8.72106 -8.14194 -7.49485 -5.90403 -3.30119 -0.12903 0.56767 1.64658 2.22000 2.65633 2.70639 3.18574 3.26267 3.29873 3.36680 3.41360 3.74573 3.88413 4.31274 4.45798 4.52025 4.58194 4.68753 4.77505 4.80675 4.93777 5.08896 5.09654 5.18514 5.20617 5.23376 5.33209 5.35689 5.42773 5.47190 5.50857 5.61230 5.65652 5.69319 5.78417 5.92810 6.04645 6.12429 6.19330 6.32455 6.35396 6.58842 7.26503 7.28659 7.33613 7.81971 7.88929 8.27449 9.03168 9.74583 9.90986 11.26981 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002848 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.169746 B = 9828.299001 C =11037.198361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.100 3.900 3 C -0.257 4.257 4 C 0.254 3.746 5 N -0.456 5.456 6 C 0.200 3.800 7 C -0.106 4.106 8 C -0.223 4.223 9 C 0.165 3.835 10 C 0.561 3.439 11 O -0.490 6.490 12 N -0.599 5.599 13 C 0.084 3.916 14 C -0.144 4.144 15 C 0.178 3.822 16 H 0.076 0.924 17 N -0.734 5.734 18 C -0.258 4.258 19 H 0.093 0.907 20 C 0.011 3.989 21 N -0.926 5.926 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.276 1.276 26 C 0.084 3.916 27 N -0.294 5.294 28 N -0.270 5.270 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.201 0.799 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.365 0.635 42 H 0.262 0.738 43 H 0.073 0.927 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 26.737 1.498 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 C -0.287 4.287 4 C 0.028 3.972 5 N -0.169 5.169 6 C 0.035 3.965 7 C -0.164 4.164 8 C -0.247 4.247 9 C 0.046 3.954 10 C 0.345 3.655 11 O -0.362 6.362 12 N -0.334 5.334 13 C -0.038 4.038 14 C -0.183 4.183 15 C 0.066 3.934 16 H 0.094 0.906 17 N -0.375 5.375 18 C -0.387 4.387 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.572 5.572 22 Si 0.715 3.285 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.202 1.202 26 C -0.041 4.041 27 N -0.067 5.067 28 N -0.095 5.095 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.181 0.819 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.217 0.783 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.199 0.801 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.518 25.784 1.256 26.053 hybrid contribution 0.712 -0.021 1.190 1.386 sum -2.807 25.763 2.446 26.031 Atomic orbital electron populations 1.20274 0.85417 1.03896 1.03611 1.22473 0.97676 0.90181 0.95609 1.20845 0.87239 1.00245 1.20420 1.20693 0.94659 0.79859 1.02004 1.67738 0.96037 1.37517 1.15635 1.21891 0.94244 0.90762 0.89625 1.20845 0.90643 1.00583 1.04290 1.23466 0.99651 0.95845 1.05757 1.20406 0.83093 0.93957 0.97925 1.17112 0.83982 0.84506 0.79899 1.90943 1.30029 1.68312 1.46953 1.48292 1.04674 1.09770 1.70656 1.22591 0.82667 0.97316 1.01254 1.23061 0.97705 0.94500 1.03028 1.21327 0.89254 0.85306 0.97493 0.90567 1.42623 1.63702 1.01902 1.29264 1.19062 1.29767 0.82233 1.07680 0.88900 1.24702 1.00183 0.95132 0.98534 1.69700 1.49766 0.97074 1.40699 0.86563 0.80388 0.77093 0.84503 1.20923 1.21539 1.20195 1.23544 1.02140 0.75917 1.02459 1.47042 1.05736 1.06669 1.47227 1.78363 0.82063 1.20307 1.28811 0.89815 0.90237 0.89843 0.81947 0.88995 0.89328 0.89442 0.78307 0.90037 0.90299 0.89294 0.90169 0.80120 0.92784 0.90839 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.43 36.00 0.38 -0.25 16 2 C 0.10 1.32 7.15 -82.63 -0.59 0.72 16 3 C -0.26 -3.23 10.82 -39.18 -0.42 -3.66 16 4 C 0.25 3.63 7.93 -155.56 -1.23 2.40 16 5 N -0.46 -5.62 10.36 -8.47 -0.09 -5.70 16 6 C 0.20 1.88 6.82 -82.17 -0.56 1.32 16 7 C -0.11 -0.50 10.18 36.01 0.37 -0.14 16 8 C -0.22 -2.21 8.34 -39.36 -0.33 -2.54 16 9 C 0.17 2.37 6.81 -81.99 -0.56 1.81 16 10 C 0.56 9.27 7.83 -12.49 -0.10 9.17 16 11 O -0.49 -10.19 16.29 5.29 0.09 -10.11 16 12 N -0.60 -8.51 3.33 -174.56 -0.58 -9.09 16 13 C 0.08 0.80 4.88 -3.07 -0.01 0.78 16 14 C -0.14 -1.61 6.59 -24.74 -0.16 -1.78 16 15 C 0.18 2.95 3.70 -65.63 -0.24 2.70 16 16 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 17 N -0.73 -15.56 5.08 -51.20 -0.26 -15.82 16 18 C -0.26 -6.82 10.47 -15.06 -0.16 -6.98 16 19 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 20 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 21 N -0.93 -28.12 13.97 55.49 0.78 -27.35 16 22 Si 0.88 20.81 27.74 -169.99 -4.71 16.09 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -5.92 6.52 56.52 0.37 -5.56 16 26 C 0.08 1.42 6.62 -2.53 -0.02 1.40 16 27 N -0.29 -4.72 3.94 -8.87 -0.03 -4.75 16 28 N -0.27 -4.59 11.65 33.51 0.39 -4.20 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.16 1.57 8.06 -52.48 -0.42 1.14 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.21 8.09 -51.93 -0.42 -0.21 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.20 1.33 2.78 -56.12 -0.16 1.17 16 37 H 0.08 0.57 6.78 -51.93 -0.35 0.22 16 38 H 0.08 0.56 6.76 -51.93 -0.35 0.20 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 41 H 0.37 7.50 5.58 -40.82 -0.23 7.27 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.08 1.60 7.98 -51.93 -0.41 1.18 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -36.72 362.68 -8.44 -45.16 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.73 Total: 5.12 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -3.74 Total: 5.19 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: 0.20 Total: -66.91 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.71 Total: 16.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.72 -8.44 -45.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970743668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.790 kcal (2) G-P(sol) polarization free energy of solvation -36.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds