Wall clock time and date at job start Tue Mar 31 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39971 * 119.94662 * 2 1 4 4 C 1.35756 * 119.35495 * 180.02562 * 3 2 1 5 5 N 1.36306 * 119.15728 * 359.97438 * 4 3 2 6 6 N 1.39914 * 132.16312 * 179.97438 * 5 4 3 7 7 C 1.30704 * 109.51613 * 180.02562 * 6 5 4 8 8 C 1.40640 * 108.72913 * 0.02562 * 7 6 5 9 9 C 1.46583 * 126.53727 * 179.97438 * 8 7 6 10 10 O 1.21716 * 119.99797 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00283 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00225 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.46787 * 325.00112 * 12 11 9 14 14 C 1.52997 * 109.47199 * 85.00017 * 12 11 9 15 15 C 1.52999 * 109.46945 * 205.00382 * 12 11 9 16 16 C 1.53946 * 113.74078 * 162.20054 * 15 12 11 17 17 N 1.47813 * 86.03494 * 222.08149 * 16 15 12 18 18 C 1.36933 * 134.45398 * 204.63943 * 17 16 15 19 19 H 1.08003 * 120.00164 * 182.58232 * 18 17 16 20 20 C 1.38819 * 120.00407 * 2.58460 * 18 17 16 21 21 N 1.31616 * 119.99380 * 353.42013 * 20 18 17 22 22 Si 1.86790 * 120.00158 * 173.40983 * 20 18 17 23 23 H 1.48507 * 109.47155 * 94.97561 * 22 20 18 24 24 H 1.48497 * 109.47527 * 214.97587 * 22 20 18 25 25 H 1.48501 * 109.47415 * 334.97785 * 22 20 18 26 26 C 1.47580 * 91.05179 * 24.54875 * 17 16 15 27 27 C 1.36592 * 119.72951 * 0.02562 * 5 4 3 28 28 N 1.31497 * 119.95101 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46989 * 90.00211 * 1 2 3 30 30 H 1.09004 * 109.46958 * 209.99625 * 1 2 3 31 31 H 1.08994 * 109.47097 * 329.99990 * 1 2 3 32 32 H 1.07999 * 120.32015 * 0.27813 * 3 2 1 33 33 H 1.07999 * 120.41298 * 179.97438 * 4 3 2 34 34 H 1.07997 * 125.63003 * 179.97438 * 7 6 5 35 35 H 0.96996 * 119.99896 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.47049 * 64.48880 * 14 12 11 37 37 H 1.08997 * 109.47469 * 184.48804 * 14 12 11 38 38 H 1.08997 * 109.47111 * 304.49010 * 14 12 11 39 39 H 1.08997 * 112.94202 * 293.78482 * 15 12 11 40 40 H 1.09005 * 113.76684 * 336.34354 * 16 15 12 41 41 H 1.08996 * 113.77390 * 107.73946 * 16 15 12 42 42 H 0.97000 * 119.99529 * 179.97438 * 21 20 18 43 43 H 1.09001 * 113.76617 * 221.15268 * 26 17 16 44 44 H 1.09003 * 113.87124 * 89.76671 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.2128 0.0000 4 6 3.5632 1.1988 -0.0005 5 7 4.2150 0.0017 -0.0005 6 7 5.5749 -0.3273 -0.0014 7 6 5.7097 -1.6273 -0.0015 8 6 4.4314 -2.2139 -0.0013 9 6 4.1294 -3.6482 -0.0018 10 8 2.9726 -4.0266 -0.0019 11 7 5.1327 -4.5482 -0.0021 12 6 4.8309 -5.9818 -0.0020 13 1 3.9324 -6.1638 0.5876 14 6 4.6024 -6.4549 -1.4389 15 6 6.0052 -6.7501 0.6073 16 6 5.6456 -8.1782 1.0558 17 7 6.4587 -7.8955 2.2574 18 6 7.1428 -8.6695 3.1562 19 1 7.6401 -8.2089 3.9971 20 6 7.1973 -10.0462 2.9868 21 7 6.4869 -10.6212 2.0398 22 14 8.2790 -11.0825 4.1027 23 1 7.4673 -11.6089 5.2294 24 1 8.8459 -12.2162 3.3291 25 1 9.3838 -10.2463 4.6370 26 6 6.2390 -6.4449 2.0980 27 6 3.4971 -1.1604 -0.0005 28 7 2.1635 -1.1394 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6701 2.1506 0.0045 33 1 4.1195 2.1245 -0.0010 34 1 6.6477 -2.1626 -0.0026 35 1 6.0546 -4.2467 -0.0016 36 1 5.5255 -6.3466 -2.0083 37 1 4.2999 -7.5020 -1.4330 38 1 3.8189 -5.8530 -1.8994 39 1 6.9093 -6.6952 0.0010 40 1 4.5853 -8.3188 1.2659 41 1 6.0607 -8.9572 0.4163 42 1 6.5253 -11.5832 1.9211 43 1 7.1272 -5.8425 2.2890 44 1 5.3539 -6.0734 2.6145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970752987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:31 Heat of formation + Delta-G solvation = 109.549757 kcal Electronic energy + Delta-G solvation = -27215.975040 eV Core-core repulsion = 23364.332022 eV Total energy + Delta-G solvation = -3851.643019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.50474 -40.82832 -39.62453 -39.12249 -36.06618 -35.22226 -34.12295 -33.21180 -32.14139 -30.34763 -29.35324 -29.19667 -26.60021 -25.83205 -25.20928 -24.09364 -23.47330 -22.54077 -21.29847 -20.72663 -19.49936 -18.76600 -18.30728 -17.77067 -17.34123 -17.05222 -16.73798 -16.35853 -15.83114 -15.64115 -15.39487 -15.19598 -14.83835 -14.76004 -14.66307 -14.54291 -14.02404 -13.70491 -13.38578 -13.20822 -13.14889 -13.06506 -12.95725 -12.80986 -12.67795 -12.64516 -12.35607 -12.27256 -12.00995 -11.77031 -11.53502 -11.21300 -10.82440 -10.80636 -10.77669 -10.53516 -9.98548 -9.08696 -8.91789 -7.90044 -5.22466 -0.62832 -0.22323 0.91100 1.05172 1.45833 1.47799 1.57355 2.09682 2.28420 2.48565 2.60593 2.72538 3.01501 3.31110 3.37621 3.40485 3.75635 3.77553 3.94263 4.01048 4.03900 4.29217 4.33049 4.39765 4.47101 4.57695 4.61846 4.72338 4.77766 4.80272 4.85250 4.88571 4.89773 4.99270 5.12293 5.17515 5.26427 5.27061 5.33248 5.43049 5.55329 5.63640 5.69439 5.94720 6.19776 6.62800 6.77649 6.92958 7.45856 7.61717 8.58420 9.27691 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.002318 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.807406 B =12076.105451 C =12412.350995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.204 3.796 3 C -0.200 4.200 4 C 0.157 3.843 5 N -0.316 5.316 6 N -0.326 5.326 7 C 0.144 3.856 8 C -0.329 4.329 9 C 0.594 3.406 10 O -0.584 6.584 11 N -0.705 5.705 12 C 0.167 3.833 13 H 0.055 0.945 14 C -0.149 4.149 15 C -0.106 4.106 16 C 0.171 3.829 17 N -0.643 5.643 18 C -0.236 4.236 19 H 0.083 0.917 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.980 3.020 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.265 1.265 26 C 0.127 3.873 27 C 0.308 3.692 28 N -0.505 5.505 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.126 0.874 32 H 0.225 0.775 33 H 0.226 0.774 34 H 0.239 0.761 35 H 0.411 0.589 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.110 0.890 40 H 0.008 0.992 41 H 0.047 0.953 42 H 0.249 0.751 43 H 0.065 0.935 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 31.415 -8.603 33.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.045 3.955 3 C -0.222 4.222 4 C 0.023 3.977 5 N -0.085 5.085 6 N -0.148 5.148 7 C -0.038 4.038 8 C -0.346 4.346 9 C 0.383 3.617 10 O -0.465 6.465 11 N -0.356 5.356 12 C 0.061 3.939 13 H 0.073 0.927 14 C -0.208 4.208 15 C -0.126 4.126 16 C 0.045 3.955 17 N -0.370 5.370 18 C -0.365 4.365 19 H 0.101 0.899 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.808 3.192 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.190 1.190 26 C 0.002 3.998 27 C 0.074 3.926 28 N -0.220 5.220 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.242 0.758 33 H 0.242 0.758 34 H 0.255 0.745 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.128 0.872 40 H 0.026 0.974 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.493 31.057 -8.456 33.048 hybrid contribution 0.589 -1.282 0.780 1.612 sum -6.904 29.774 -7.676 31.513 Atomic orbital electron populations 1.21047 0.84583 1.05649 1.05332 1.22943 0.99881 0.87607 0.85090 1.22369 0.91968 1.02085 1.05806 1.23112 0.93676 0.88475 0.92442 1.47269 1.07466 1.07107 1.46636 1.77509 0.89133 1.16090 1.32044 1.24625 0.98494 0.90401 0.90274 1.19409 0.92234 0.92301 1.30667 1.17077 0.84672 0.84655 0.75267 1.90790 1.21717 1.81381 1.52625 1.45572 1.09404 1.05251 1.75392 1.20689 0.97019 0.79246 0.96937 0.92660 1.22027 1.02234 1.01145 0.95369 1.23431 0.98077 0.95558 0.95512 1.22136 0.92374 0.93761 0.87263 1.46501 1.56958 1.02624 1.30895 1.19452 1.23681 0.89205 1.04138 0.89928 1.25662 1.01902 0.97572 1.01034 1.70022 1.44512 1.09318 1.36444 0.85042 0.78510 0.78186 0.77459 1.21750 1.21783 1.18997 1.22663 0.98073 0.85722 0.93293 1.20542 0.88484 0.87285 0.96266 1.68218 1.03991 1.31149 1.18611 0.87607 0.91341 0.85549 0.75817 0.75789 0.74534 0.75210 0.90545 0.91918 0.93411 0.87171 0.97385 0.93464 0.94214 0.91659 0.95551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.19 71.24 0.73 -0.14 16 2 C 0.20 3.08 6.83 43.03 0.29 3.38 16 3 C -0.20 -1.28 9.72 22.11 0.22 -1.06 16 4 C 0.16 1.55 11.29 83.42 0.94 2.50 16 5 N -0.32 -6.57 3.86 -191.80 -0.74 -7.31 16 6 N -0.33 -7.03 12.58 -56.58 -0.71 -7.75 16 7 C 0.14 2.99 11.44 85.45 0.98 3.97 16 8 C -0.33 -9.43 6.17 -19.89 -0.12 -9.55 16 9 C 0.59 20.06 7.75 86.42 0.67 20.73 16 10 O -0.58 -25.10 16.40 -4.40 -0.07 -25.17 16 11 N -0.70 -19.98 4.94 -446.59 -2.21 -22.19 16 12 C 0.17 5.56 2.28 44.99 0.10 5.67 16 13 H 0.06 2.24 7.49 -2.39 -0.02 2.22 16 14 C -0.15 -4.52 9.43 71.98 0.68 -3.84 16 15 C -0.11 -3.89 3.35 -10.13 -0.03 -3.92 16 16 C 0.17 8.40 7.02 86.44 0.61 9.01 16 17 N -0.64 -34.27 3.70 -716.13 -2.65 -36.93 16 18 C -0.24 -13.71 10.69 84.04 0.90 -12.81 16 19 H 0.08 4.57 7.84 -2.91 -0.02 4.55 16 20 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 21 N -0.95 -59.23 11.43 21.65 0.25 -58.98 16 22 Si 0.98 46.81 29.56 68.60 2.03 48.84 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.13 5.26 8.38 86.49 0.72 5.98 16 27 C 0.31 8.63 7.74 133.99 1.04 9.66 16 28 N -0.51 -13.81 10.18 -180.00 -1.83 -15.64 16 29 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.13 -0.03 8.09 -2.39 -0.02 -0.05 16 32 H 0.23 -1.12 8.06 -2.91 -0.02 -1.15 16 33 H 0.23 0.15 8.06 -2.91 -0.02 0.13 16 34 H 0.24 2.76 7.46 -2.91 -0.02 2.74 16 35 H 0.41 8.61 7.52 -92.71 -0.70 7.91 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.01 0.44 8.04 -2.38 -0.02 0.42 16 41 H 0.05 2.55 7.20 -2.39 -0.02 2.54 16 42 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.03 1.14 8.10 -2.39 -0.02 1.12 16 Total: -1.00 -91.73 374.93 2.57 -89.15 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.33 Total: 9.99 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 8.18 Total: 25.99 kcal Atomic # 7 Polarization: -140.90 SS G_CDS: -7.90 Total: -148.80 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.07 Total: -25.17 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -91.73 2.57 -89.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970752987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.701 kcal (2) G-P(sol) polarization free energy of solvation -91.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds