Wall clock time and date at job start Tue Mar 31 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33718 * 126.12427 * 2 1 4 4 H 0.97001 * 124.97631 * 0.05415 * 3 2 1 5 5 N 1.39887 * 110.05530 * 180.02562 * 3 2 1 6 6 C 1.31912 * 109.17395 * 0.02562 * 5 3 2 7 7 N 1.34416 * 134.12586 * 179.97438 * 6 5 3 8 8 C 1.30505 * 121.55869 * 179.67874 * 7 6 5 9 9 C 1.40807 * 122.37634 * 0.59841 * 8 7 6 10 10 C 1.47518 * 119.91645 * 179.70603 * 9 8 7 11 11 O 1.21601 * 120.00085 * 179.72763 * 10 9 8 12 12 N 1.34777 * 120.00195 * 359.72256 * 10 9 8 13 13 C 1.46505 * 120.00207 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46918 * 35.00652 * 13 12 10 15 15 C 1.52995 * 109.46965 * 275.00529 * 13 12 10 16 16 C 1.53002 * 109.46769 * 155.00392 * 13 12 10 17 17 C 1.53496 * 114.20179 * 180.02562 * 16 13 12 18 18 N 1.47070 * 87.98352 * 87.52002 * 17 16 13 19 19 C 1.36935 * 136.05550 * 207.07944 * 18 17 16 20 20 H 1.08005 * 120.00172 * 6.50069 * 19 18 17 21 21 C 1.38815 * 119.99990 * 186.49806 * 19 18 17 22 22 N 1.31619 * 119.99663 * 6.42579 * 21 19 18 23 23 Si 1.86800 * 119.99976 * 186.42252 * 21 19 18 24 24 H 1.48495 * 109.47340 * 265.02201 * 23 21 19 25 25 H 1.48498 * 109.46951 * 25.02385 * 23 21 19 26 26 H 1.48498 * 109.46744 * 145.01993 * 23 21 19 27 27 C 1.47064 * 87.88277 * 27.34197 * 18 17 16 28 28 C 1.38866 * 120.16493 * 359.43443 * 9 8 7 29 29 C 1.38532 * 126.12773 * 180.02562 * 2 1 3 30 30 H 1.09009 * 109.46849 * 269.97773 * 1 2 3 31 31 H 1.08996 * 109.47565 * 29.97232 * 1 2 3 32 32 H 1.08995 * 109.47484 * 149.97870 * 1 2 3 33 33 H 1.08004 * 118.81113 * 180.28330 * 8 7 6 34 34 H 0.96997 * 119.99864 * 0.02562 * 12 10 9 35 35 H 1.09008 * 109.46757 * 179.97438 * 15 13 12 36 36 H 1.09000 * 109.47403 * 299.99826 * 15 13 12 37 37 H 1.09001 * 109.47570 * 60.00269 * 15 13 12 38 38 H 1.08996 * 113.41116 * 46.80608 * 16 13 12 39 39 H 1.09004 * 113.46865 * 332.74440 * 17 16 13 40 40 H 1.08993 * 113.51976 * 202.30849 * 17 16 13 41 41 H 0.97005 * 119.99413 * 179.97438 * 22 21 19 42 42 H 1.09000 * 113.46743 * 87.44096 * 27 18 17 43 43 H 1.08999 * 113.46191 * 217.87327 * 27 18 17 44 44 H 1.08002 * 121.04731 * 180.23001 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2953 1.0801 0.0000 4 1 1.9811 1.9978 0.0008 5 7 3.6395 0.6929 -0.0006 6 6 3.7109 -0.6243 -0.0015 7 7 4.7251 -1.5065 -0.0028 8 6 4.5105 -2.7938 0.0027 9 6 3.2136 -3.3421 -0.0021 10 6 3.0338 -4.8062 -0.0020 11 8 1.9145 -5.2814 -0.0011 12 7 4.1102 -5.6174 -0.0030 13 6 3.9316 -7.0715 -0.0023 14 1 3.0512 -7.3297 -0.5907 15 6 3.7462 -7.5619 1.4351 16 6 5.1665 -7.7372 -0.6130 17 6 5.0937 -9.2695 -0.6666 18 7 4.4214 -9.1402 -1.9682 19 6 3.5332 -9.8848 -2.6974 20 1 3.0890 -10.7701 -2.2666 21 6 3.2036 -9.5019 -3.9903 22 7 3.8367 -8.4992 -4.5612 23 14 1.8616 -10.4099 -4.9199 24 1 2.4732 -11.4651 -5.7670 25 1 0.9242 -11.0338 -3.9518 26 1 1.1205 -9.4525 -5.7797 27 6 5.1280 -7.8626 -2.1449 28 6 2.1034 -2.5079 -0.0012 29 6 2.3237 -1.1189 -0.0005 30 1 -0.3633 -0.0004 1.0278 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5141 33 1 5.3584 -3.4628 0.0061 34 1 5.0030 -5.2384 -0.0033 35 1 3.6129 -8.6438 1.4355 36 1 4.6266 -7.3037 2.0235 37 1 2.8665 -7.0876 1.8702 38 1 6.1064 -7.3475 -0.2223 39 1 4.4600 -9.7013 0.1082 40 1 6.0703 -9.7494 -0.7282 41 1 3.6066 -8.2318 -5.4649 42 1 6.1142 -7.9709 -2.5965 43 1 4.5237 -7.0959 -2.6297 44 1 1.1023 -2.9131 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970883825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:00 Heat of formation + Delta-G solvation = 129.000105 kcal Electronic energy + Delta-G solvation = -27419.491278 eV Core-core repulsion = 23568.691690 eV Total energy + Delta-G solvation = -3850.799589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.91364 -39.89463 -38.51311 -37.64230 -34.65876 -33.74272 -32.22847 -31.83130 -31.40807 -29.92591 -27.69031 -27.54404 -25.22978 -24.69018 -23.97882 -23.40686 -21.65951 -20.75040 -20.17719 -19.01637 -18.35326 -17.57793 -16.98886 -16.65634 -16.19275 -15.90370 -15.43239 -14.83098 -14.75182 -14.58031 -13.99889 -13.81712 -13.73811 -13.65937 -13.29604 -13.24280 -12.98407 -12.84108 -12.63216 -12.48218 -11.95797 -11.73574 -11.46824 -11.34343 -10.88752 -10.83561 -10.72486 -10.67260 -10.28841 -9.98604 -9.79496 -9.73336 -9.42386 -9.30491 -9.14345 -8.78635 -8.66388 -8.25567 -6.81715 -5.72347 -3.02655 0.03883 1.02855 1.91574 2.06831 3.07339 3.31740 3.43777 3.49101 3.51394 3.61575 3.83310 3.85273 4.27994 4.50111 4.52248 4.62627 4.82855 4.86077 4.92080 5.05694 5.23719 5.26481 5.31503 5.35445 5.39716 5.58976 5.81268 5.84815 5.89632 5.95338 6.09923 6.16514 6.17977 6.34987 6.50292 6.53083 6.60162 6.69674 6.76417 6.93750 7.05664 7.24651 7.34656 7.59711 7.73884 7.80924 8.02964 8.49387 9.09447 9.76571 10.70839 11.46288 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.002848 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.152370 B = 9827.789211 C =10619.577696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.153 3.847 3 N -0.411 5.411 4 H 0.447 0.553 5 N -0.294 5.294 6 C 0.285 3.715 7 N -0.478 5.478 8 C 0.225 3.775 9 C -0.237 4.237 10 C 0.569 3.431 11 O -0.539 6.539 12 N -0.714 5.714 13 C 0.171 3.829 14 H 0.104 0.896 15 C -0.157 4.157 16 C -0.157 4.157 17 C 0.125 3.875 18 N -0.608 5.608 19 C -0.218 4.218 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.279 1.279 26 H -0.290 1.290 27 C 0.166 3.834 28 C 0.086 3.914 29 C -0.272 4.272 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.168 0.832 34 H 0.394 0.606 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.253 0.747 42 H 0.028 0.972 43 H 0.062 0.938 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 18.419 13.117 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.010 3.990 3 N -0.112 5.112 4 H 0.293 0.707 5 N -0.124 5.124 6 C 0.022 3.978 7 N -0.189 5.189 8 C 0.039 3.961 9 C -0.244 4.244 10 C 0.355 3.645 11 O -0.417 6.417 12 N -0.364 5.364 13 C 0.068 3.932 14 H 0.122 0.878 15 C -0.216 4.216 16 C -0.177 4.177 17 C -0.002 4.002 18 N -0.334 5.334 19 C -0.345 4.345 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.205 1.205 26 H -0.217 1.217 27 C 0.040 3.960 28 C 0.058 3.942 29 C -0.284 4.284 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.185 0.815 34 H 0.229 0.771 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.255 19.623 12.811 23.660 hybrid contribution -1.383 -0.852 -0.788 1.805 sum -4.637 18.771 12.024 22.769 Atomic orbital electron populations 1.20711 0.85454 1.05354 1.04647 1.21435 0.94713 0.87147 0.95733 1.46405 1.04588 1.08944 1.51263 0.70726 1.77767 0.91746 1.10374 1.32515 1.21409 0.88703 0.91452 0.96227 1.67361 1.31492 1.01767 1.18324 1.23066 0.95486 0.90378 0.87159 1.20584 0.94836 0.94690 1.14332 1.17760 0.84996 0.85289 0.76441 1.90792 1.23989 1.76652 1.50223 1.45968 1.08331 1.07454 1.74652 1.20627 0.99657 0.76876 0.96054 0.87840 1.22131 1.01152 1.01891 0.96384 1.23329 0.95966 0.97887 1.00536 1.22419 0.95617 0.91952 0.90162 1.45726 1.47439 1.22111 1.18105 1.18923 1.14629 1.06472 0.94473 0.90188 1.24799 1.00069 0.99054 0.96413 1.69846 1.42765 1.29733 1.14138 0.86138 0.81492 0.78625 0.79761 1.21745 1.20477 1.21650 1.22039 0.95128 0.89747 0.89047 1.21121 0.99632 0.89154 0.84321 1.20061 0.94818 0.94315 1.19205 0.88693 0.89901 0.88303 0.81529 0.77125 0.91289 0.93052 0.92731 0.91091 0.93811 0.94918 0.93749 0.95383 0.92001 0.83250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.35 10.45 36.00 0.38 0.03 16 2 C 0.15 1.18 7.28 -81.66 -0.59 0.59 16 3 N -0.41 -3.21 7.16 33.86 0.24 -2.96 16 4 H 0.45 1.54 8.96 -182.76 -1.64 -0.10 16 5 N -0.29 -3.76 12.68 31.97 0.41 -3.35 16 6 C 0.28 3.98 8.60 -156.39 -1.35 2.63 16 7 N -0.48 -6.80 10.42 -11.02 -0.11 -6.92 16 8 C 0.23 2.74 10.64 -17.14 -0.18 2.56 16 9 C -0.24 -3.13 5.88 -104.91 -0.62 -3.75 16 10 C 0.57 8.92 7.72 -12.48 -0.10 8.83 16 11 O -0.54 -10.43 16.01 5.28 0.08 -10.35 16 12 N -0.71 -10.25 5.03 -54.85 -0.28 -10.52 16 13 C 0.17 2.90 2.43 -67.93 -0.16 2.74 16 14 H 0.10 2.28 7.36 -51.93 -0.38 1.90 16 15 C -0.16 -2.28 9.29 37.16 0.35 -1.94 16 16 C -0.16 -2.73 3.73 -89.97 -0.34 -3.07 16 17 C 0.13 2.48 8.08 -8.51 -0.07 2.41 16 18 N -0.61 -15.47 3.57 -184.62 -0.66 -16.13 16 19 C -0.22 -6.16 10.73 -15.06 -0.16 -6.32 16 20 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -27.74 11.81 55.49 0.66 -27.08 16 23 Si 0.91 22.62 29.56 -169.99 -5.02 17.59 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 27 C 0.17 3.82 6.77 -8.38 -0.06 3.77 16 28 C 0.09 1.05 9.75 -38.44 -0.37 0.67 16 29 C -0.27 -3.13 6.26 -105.21 -0.66 -3.79 16 30 H 0.09 0.20 8.14 -51.92 -0.42 -0.22 16 31 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.17 1.49 6.30 -52.48 -0.33 1.16 16 34 H 0.39 4.38 6.57 -40.82 -0.27 4.11 16 35 H 0.07 1.01 6.50 -51.92 -0.34 0.67 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.82 6.43 -51.93 -0.33 0.48 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 1.60 7.56 -51.93 -0.39 1.21 16 44 H 0.15 1.62 7.67 -52.49 -0.40 1.22 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -38.36 369.29 -10.17 -48.53 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.01 Total: 0.55 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -4.03 Total: 5.08 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: 0.25 Total: -66.97 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.36 -10.17 -48.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970883825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.530 kcal (2) G-P(sol) polarization free energy of solvation -38.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds