Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33723 * 126.12428 * 2 1 4 4 H 0.97002 * 124.97341 * 0.06949 * 3 2 1 5 5 N 1.39877 * 110.05573 * 180.02562 * 3 2 1 6 6 C 1.31922 * 109.17808 * 359.97438 * 5 3 2 7 7 N 1.34410 * 134.12659 * 180.02562 * 6 5 3 8 8 C 1.30506 * 121.56145 * 180.02562 * 7 6 5 9 9 C 1.40819 * 122.37373 * 359.97438 * 8 7 6 10 10 C 1.47514 * 119.91649 * 180.02562 * 9 8 7 11 11 O 1.21605 * 119.99838 * 179.97438 * 10 9 8 12 12 N 1.34767 * 120.00087 * 359.97431 * 10 9 8 13 13 C 1.46506 * 120.00059 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47269 * 325.00494 * 13 12 10 15 15 C 1.53005 * 109.46728 * 85.00634 * 13 12 10 16 16 C 1.53001 * 109.47414 * 205.00405 * 13 12 10 17 17 C 1.53944 * 113.74095 * 162.20022 * 16 13 12 18 18 N 1.47819 * 86.03414 * 222.08286 * 17 16 13 19 19 C 1.36929 * 134.45433 * 204.64420 * 18 17 16 20 20 H 1.08004 * 119.99791 * 182.58546 * 19 18 17 21 21 C 1.38806 * 120.00371 * 2.58467 * 19 18 17 22 22 N 1.31621 * 120.00230 * 353.41349 * 21 19 18 23 23 Si 1.86801 * 120.00444 * 173.41929 * 21 19 18 24 24 H 1.48497 * 109.47407 * 94.96933 * 23 21 19 25 25 H 1.48495 * 109.47393 * 214.97372 * 23 21 19 26 26 H 1.48508 * 109.46984 * 334.97184 * 23 21 19 27 27 C 1.47579 * 91.04719 * 24.54896 * 18 17 16 28 28 C 1.38879 * 120.16357 * 0.02562 * 9 8 7 29 29 C 1.38543 * 126.12800 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47059 * 269.97343 * 1 2 3 31 31 H 1.08997 * 109.47542 * 29.97612 * 1 2 3 32 32 H 1.09002 * 109.46761 * 149.97720 * 1 2 3 33 33 H 1.07993 * 118.81416 * 180.02562 * 8 7 6 34 34 H 0.97002 * 120.00425 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.46587 * 184.49087 * 15 13 12 36 36 H 1.09006 * 109.46560 * 304.48465 * 15 13 12 37 37 H 1.08992 * 109.47483 * 64.48771 * 15 13 12 38 38 H 1.08998 * 112.94129 * 293.79424 * 16 13 12 39 39 H 1.08997 * 113.77249 * 336.34635 * 17 16 13 40 40 H 1.09001 * 113.76414 * 107.75005 * 17 16 13 41 41 H 0.97001 * 120.00388 * 179.97438 * 22 21 19 42 42 H 1.09012 * 113.76723 * 221.14748 * 27 18 17 43 43 H 1.09000 * 113.87409 * 89.77284 * 27 18 17 44 44 H 1.07998 * 121.04418 * 180.27244 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2953 1.0801 0.0000 4 1 1.9810 1.9978 0.0010 5 7 3.6394 0.6930 -0.0006 6 6 3.7110 -0.6243 -0.0004 7 7 4.7251 -1.5064 -0.0003 8 6 4.5107 -2.7937 -0.0006 9 6 3.2137 -3.3421 -0.0005 10 6 3.0339 -4.8063 -0.0003 11 8 1.9146 -5.2814 0.0002 12 7 4.1103 -5.6173 -0.0007 13 6 3.9317 -7.0714 0.0000 14 1 3.0523 -7.3293 0.5902 15 6 3.7439 -7.5629 -1.4367 16 6 5.1676 -7.7367 0.6091 17 6 4.9311 -9.1901 1.0583 18 7 5.7177 -8.8386 2.2594 19 6 6.4657 -9.5510 3.1582 20 1 6.9222 -9.0492 3.9987 21 6 6.6373 -10.9180 2.9893 22 7 5.9781 -11.5521 2.0429 23 14 7.8038 -11.8580 4.1052 24 1 7.0403 -12.4512 5.2323 25 1 8.4650 -12.9395 3.3318 26 1 8.8336 -10.9304 4.6388 27 6 5.3751 -7.4120 2.0995 28 6 2.1033 -2.5079 -0.0006 29 6 2.3238 -1.1190 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 5.3586 -3.4626 -0.0001 34 1 5.0032 -5.2383 -0.0008 35 1 3.5318 -8.6321 -1.4301 36 1 2.9117 -7.0302 -1.8970 37 1 4.6542 -7.3765 -2.0064 38 1 6.0635 -7.6051 0.0024 39 1 3.8868 -9.4205 1.2689 40 1 5.4110 -9.9310 0.4189 41 1 6.0983 -12.5073 1.9245 42 1 6.2088 -6.7359 2.2900 43 1 4.4619 -7.1170 2.6162 44 1 1.1023 -2.9131 0.0038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970883827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = 122.955024 kcal Electronic energy + Delta-G solvation = -26986.561867 eV Core-core repulsion = 23135.500144 eV Total energy + Delta-G solvation = -3851.061723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.01223 -40.00958 -38.40172 -37.66690 -34.84275 -33.84924 -32.26274 -31.93211 -31.51483 -30.13497 -27.78797 -27.43393 -25.29644 -24.77394 -24.18861 -23.46993 -21.38275 -20.81495 -20.28765 -19.25575 -18.44035 -17.82727 -17.16347 -16.74315 -16.21688 -16.00409 -15.41561 -14.93419 -14.78418 -14.68547 -14.07677 -13.84532 -13.82852 -13.78964 -13.51678 -13.28800 -13.13960 -12.96000 -12.71763 -12.26171 -12.02838 -11.55645 -11.53883 -11.34478 -11.21805 -10.95000 -10.86340 -10.63163 -10.33326 -10.20351 -9.78791 -9.76828 -9.52428 -9.44215 -9.34765 -8.87009 -8.70343 -8.36403 -6.84606 -5.74154 -3.04698 -0.06465 0.91877 1.81122 1.97830 2.93199 3.18321 3.41652 3.46891 3.48995 3.51731 3.70588 3.75039 4.17890 4.39918 4.48477 4.51632 4.73497 4.74641 4.81825 4.94455 5.13589 5.16689 5.22729 5.26466 5.44586 5.57498 5.67085 5.74071 5.79152 5.86579 6.04053 6.07071 6.12352 6.31980 6.40920 6.43977 6.49830 6.61928 6.67061 6.84217 6.96365 7.25689 7.41327 7.58818 7.62959 7.66895 8.01667 8.31357 9.08185 9.74616 10.64122 11.43587 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.002228 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.448111 B =12564.955633 C =13094.972291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.153 3.847 3 N -0.411 5.411 4 H 0.448 0.552 5 N -0.292 5.292 6 C 0.285 3.715 7 N -0.476 5.476 8 C 0.224 3.776 9 C -0.240 4.240 10 C 0.569 3.431 11 O -0.545 6.545 12 N -0.714 5.714 13 C 0.151 3.849 14 H 0.089 0.911 15 C -0.158 4.158 16 C -0.147 4.147 17 C 0.176 3.824 18 N -0.613 5.613 19 C -0.222 4.222 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.125 3.875 28 C 0.087 3.913 29 C -0.273 4.273 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.168 0.832 34 H 0.397 0.603 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.253 0.747 42 H 0.042 0.958 43 H 0.032 0.968 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.917 24.515 -8.397 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.010 3.990 3 N -0.111 5.111 4 H 0.293 0.707 5 N -0.122 5.122 6 C 0.022 3.978 7 N -0.188 5.188 8 C 0.038 3.962 9 C -0.247 4.247 10 C 0.355 3.645 11 O -0.423 6.423 12 N -0.364 5.364 13 C 0.047 3.953 14 H 0.107 0.893 15 C -0.216 4.216 16 C -0.167 4.167 17 C 0.050 3.950 18 N -0.339 5.339 19 C -0.349 4.349 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.001 4.001 28 C 0.058 3.942 29 C -0.285 4.285 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.185 0.815 34 H 0.232 0.768 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.997 25.518 -8.254 28.987 hybrid contribution -0.396 -0.909 0.727 1.230 sum -11.393 24.609 -7.527 28.143 Atomic orbital electron populations 1.20712 0.85428 1.05264 1.04758 1.21450 0.94727 0.87150 0.95683 1.46424 1.04585 1.08995 1.51103 0.70664 1.77789 0.91733 1.10382 1.32343 1.21421 0.88687 0.91467 0.96224 1.67367 1.31498 1.01779 1.18132 1.23085 0.95491 0.90403 0.87202 1.20577 0.94868 0.94623 1.14680 1.17801 0.84960 0.85361 0.76330 1.90774 1.24022 1.76754 1.50779 1.46048 1.08515 1.07457 1.74355 1.21143 0.99862 0.77425 0.96866 0.89289 1.22112 1.01415 1.01950 0.96118 1.23853 0.96197 1.00262 0.96437 1.22229 0.94307 0.90723 0.87728 1.46041 1.55395 1.01648 1.30793 1.19025 1.22006 0.90203 1.03714 0.90329 1.24773 1.00336 0.96208 0.99164 1.69822 1.43929 1.08459 1.34632 0.86128 0.80573 0.79660 0.79570 1.21741 1.21611 1.20588 1.22543 0.97069 0.88624 0.91893 1.21111 0.99550 0.89169 0.84324 1.20057 0.94810 0.94312 1.19295 0.88607 0.89882 0.88375 0.81487 0.76776 0.91136 0.92795 0.92653 0.89213 0.95385 0.90861 0.93671 0.94019 0.94992 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.21 10.45 36.00 0.38 0.16 16 2 C 0.15 0.99 7.28 -81.66 -0.59 0.40 16 3 N -0.41 -2.76 7.16 33.86 0.24 -2.52 16 4 H 0.45 1.11 8.96 -182.76 -1.64 -0.53 16 5 N -0.29 -3.46 12.68 31.97 0.41 -3.05 16 6 C 0.28 3.65 8.60 -156.39 -1.35 2.31 16 7 N -0.48 -6.29 10.42 -11.02 -0.11 -6.40 16 8 C 0.22 2.45 10.64 -17.14 -0.18 2.27 16 9 C -0.24 -2.74 5.88 -104.90 -0.62 -3.36 16 10 C 0.57 7.60 7.72 -12.48 -0.10 7.50 16 11 O -0.54 -8.98 16.01 5.27 0.08 -8.90 16 12 N -0.71 -8.88 4.90 -54.85 -0.27 -9.15 16 13 C 0.15 2.25 2.29 -67.92 -0.16 2.09 16 14 H 0.09 1.53 7.49 -51.93 -0.39 1.14 16 15 C -0.16 -2.14 9.43 37.16 0.35 -1.79 16 16 C -0.15 -2.57 3.35 -89.70 -0.30 -2.87 16 17 C 0.18 4.03 7.03 -2.84 -0.02 4.01 16 18 N -0.61 -15.66 3.70 -177.71 -0.66 -16.32 16 19 C -0.22 -6.26 10.69 -15.07 -0.16 -6.43 16 20 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -27.35 11.43 55.49 0.63 -26.72 16 23 Si 0.91 22.26 29.56 -169.99 -5.02 17.24 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.12 2.49 8.38 -2.97 -0.02 2.46 16 28 C 0.09 0.90 9.75 -38.44 -0.37 0.52 16 29 C -0.27 -2.75 6.26 -105.21 -0.66 -3.41 16 30 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.17 1.34 6.30 -52.49 -0.33 1.01 16 34 H 0.40 3.96 6.57 -40.82 -0.27 3.69 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.03 0.67 8.04 -51.93 -0.42 0.25 16 40 H 0.07 1.85 7.20 -51.93 -0.37 1.47 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 44 H 0.15 1.32 7.67 -52.49 -0.40 0.92 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -37.75 372.04 -10.16 -47.91 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -7.17 Total: -1.24 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -3.90 Total: 3.54 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: 0.24 Total: -64.16 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.75 -10.16 -47.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970883827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.868 kcal (2) G-P(sol) polarization free energy of solvation -37.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds