Wall clock time and date at job start Tue Mar 31 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30698 * 125.63618 * 2 1 4 4 N 1.39905 * 109.51616 * 179.97438 * 3 2 1 5 5 C 1.36319 * 132.16330 * 180.02562 * 4 3 2 6 6 C 1.35754 * 119.15737 * 179.97438 * 5 4 3 7 7 C 1.39965 * 119.35522 * 0.28444 * 6 5 4 8 8 N 1.31499 * 120.10521 * 359.41930 * 7 6 5 9 9 C 1.33380 * 120.85351 * 0.58535 * 8 7 6 10 10 C 1.40647 * 125.63353 * 179.97438 * 2 1 3 11 11 C 1.46578 * 126.54180 * 0.06625 * 10 2 1 12 12 O 1.21720 * 119.99592 * 89.97722 * 11 10 2 13 13 N 1.34769 * 120.00483 * 269.97914 * 11 10 2 14 14 C 1.46505 * 120.00494 * 179.97438 * 13 11 10 15 15 H 1.09007 * 109.46677 * 325.00081 * 14 13 11 16 16 C 1.52994 * 109.46935 * 84.99866 * 14 13 11 17 17 C 1.52995 * 109.47284 * 205.00305 * 14 13 11 18 18 C 1.53947 * 113.74079 * 161.82184 * 17 14 13 19 19 N 1.47820 * 86.03363 * 222.08211 * 18 17 14 20 20 C 1.36942 * 134.45409 * 204.64591 * 19 18 17 21 21 H 1.07997 * 119.99512 * 179.86581 * 20 19 18 22 22 C 1.38815 * 119.99969 * 359.86412 * 20 19 18 23 23 N 1.31621 * 120.00202 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99768 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47095 * 60.00006 * 24 22 20 26 26 H 1.48502 * 109.47021 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47242 * 299.99633 * 24 22 20 28 28 C 1.47581 * 91.05090 * 24.54849 * 19 18 17 29 29 H 1.09000 * 109.47132 * 90.02932 * 1 2 3 30 30 H 1.08998 * 109.47426 * 210.02497 * 1 2 3 31 31 H 1.09000 * 109.47135 * 330.02827 * 1 2 3 32 32 H 1.07994 * 120.42424 * 359.97438 * 5 4 3 33 33 H 1.07995 * 120.32548 * 179.97438 * 6 5 4 34 34 H 1.08006 * 119.94795 * 179.70393 * 7 6 5 35 35 H 0.97006 * 120.00205 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47104 * 180.09167 * 16 14 13 37 37 H 1.08997 * 109.47283 * 300.08467 * 16 14 13 38 38 H 1.08996 * 109.47399 * 60.08627 * 16 14 13 39 39 H 1.09001 * 112.93940 * 293.40635 * 17 14 13 40 40 H 1.08996 * 113.77185 * 336.34226 * 18 17 14 41 41 H 1.08999 * 113.76943 * 107.74494 * 18 17 14 42 42 H 0.96993 * 120.00350 * 180.02562 * 23 22 20 43 43 H 1.09001 * 113.76604 * 221.15418 * 28 19 18 44 44 H 1.08993 * 113.87231 * 89.77174 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0622 0.0000 4 7 3.6125 0.6738 0.0006 5 6 4.7721 1.3904 0.0013 6 6 5.9580 0.7297 0.0023 7 6 5.9636 -0.6699 -0.0035 8 7 4.8287 -1.3341 0.0017 9 6 3.6600 -0.6914 0.0008 10 6 2.3264 -1.1431 0.0005 11 6 1.8777 -2.5385 -0.0002 12 8 1.6920 -3.1175 -1.0547 13 7 1.6707 -3.1805 1.1665 14 6 1.2217 -4.5751 1.1658 15 1 0.5496 -4.7399 0.3236 16 6 2.4333 -5.5008 1.0401 17 6 0.4846 -4.8742 2.4726 18 6 -0.4004 -6.1324 2.4111 19 7 -1.4032 -5.3383 3.1519 20 6 -2.4489 -5.6467 3.9806 21 1 -3.0480 -4.8576 4.4104 22 6 -2.7389 -6.9734 4.2679 23 7 -2.0084 -7.9351 3.7444 24 14 -4.1657 -7.3940 5.3977 25 1 -5.4278 -6.8684 4.8178 26 1 -4.2645 -8.8686 5.5424 27 1 -3.9397 -6.7794 6.7305 28 6 -0.8235 -4.0805 2.6422 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 4.7477 2.4701 0.0010 33 1 6.8880 1.2786 0.0024 34 1 6.9016 -1.2054 -0.0076 35 1 1.8183 -2.7190 2.0069 36 1 2.0991 -6.5383 1.0379 37 1 2.9592 -5.2867 0.1098 38 1 3.1047 -5.3371 1.8830 39 1 1.1361 -4.8383 3.3457 40 1 -0.7117 -6.4016 1.4018 41 1 -0.0034 -6.9768 2.9746 42 1 -2.2112 -8.8621 3.9449 43 1 -0.7637 -3.2896 3.3899 44 1 -1.2583 -3.7439 1.7011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970891801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:20 Heat of formation + Delta-G solvation = 137.977298 kcal Electronic energy + Delta-G solvation = -27627.570915 eV Core-core repulsion = 23777.160607 eV Total energy + Delta-G solvation = -3850.410308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.74560 -39.57917 -38.52445 -37.75633 -34.62712 -34.52406 -32.47519 -32.10733 -30.79208 -29.42780 -28.54113 -27.40290 -24.94607 -24.88405 -24.29242 -23.62466 -21.79418 -20.85953 -20.11238 -19.20893 -18.39132 -17.76260 -17.10602 -16.75838 -16.53301 -15.93534 -15.79363 -14.90270 -14.74061 -14.26272 -14.03873 -13.87000 -13.80403 -13.57587 -13.43451 -13.29842 -12.90410 -12.68558 -12.61592 -12.21112 -11.91737 -11.57476 -11.52092 -11.42616 -11.32122 -11.14546 -10.82323 -10.62707 -10.28704 -10.23228 -10.03169 -9.78163 -9.75391 -9.57431 -9.34823 -8.75209 -8.67786 -8.23946 -6.81857 -5.71730 -3.03573 0.06637 0.43409 1.59299 2.10091 2.74727 2.96319 3.40562 3.42652 3.46326 3.47238 3.48027 3.81219 3.93218 4.40342 4.49776 4.53745 4.75203 4.91379 5.08790 5.14551 5.23092 5.33003 5.34112 5.40459 5.48903 5.58001 5.62579 5.65599 5.77316 5.93701 5.96985 6.10837 6.18304 6.20285 6.38321 6.45446 6.56861 6.68299 6.72598 6.93057 7.05207 7.21504 7.28749 7.43417 7.61583 7.81144 8.03468 8.50103 9.09708 9.75957 10.66062 11.45515 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.002597 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.201162 B =10780.965955 C =11388.913104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.160 3.840 3 N -0.312 5.312 4 N -0.307 5.307 5 C 0.168 3.832 6 C -0.228 4.228 7 C 0.184 3.816 8 N -0.458 5.458 9 C 0.294 3.706 10 C -0.273 4.273 11 C 0.607 3.393 12 O -0.536 6.536 13 N -0.707 5.707 14 C 0.151 3.849 15 H 0.088 0.912 16 C -0.157 4.157 17 C -0.146 4.146 18 C 0.176 3.824 19 N -0.613 5.613 20 C -0.222 4.222 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.911 3.089 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.126 3.874 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.398 0.602 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.039 0.961 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.463 19.907 -7.270 28.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.000 4.000 3 N -0.136 5.136 4 N -0.075 5.075 5 C 0.032 3.968 6 C -0.252 4.252 7 C 0.001 3.999 8 N -0.169 5.169 9 C 0.065 3.935 10 C -0.289 4.289 11 C 0.391 3.609 12 O -0.413 6.413 13 N -0.357 5.357 14 C 0.046 3.954 15 H 0.106 0.894 16 C -0.215 4.215 17 C -0.166 4.166 18 C 0.050 3.950 19 N -0.339 5.339 20 C -0.350 4.350 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.000 4.000 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.199 0.801 33 H 0.188 0.812 34 H 0.200 0.800 35 H 0.231 0.769 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 17.751 19.581 -7.836 27.567 hybrid contribution -0.466 0.119 0.914 1.033 sum 17.285 19.701 -6.922 27.107 Atomic orbital electron populations 1.20439 0.84593 1.04696 1.04422 1.22460 0.97397 0.88240 0.91900 1.77550 0.82300 1.21238 1.32560 1.46862 1.06707 1.07112 1.46845 1.22122 0.81705 0.99598 0.93336 1.21870 0.98150 0.96358 1.08864 1.23522 0.96558 0.91584 0.88214 1.68176 0.96143 1.37344 1.15238 1.20305 0.93717 0.80565 0.98945 1.19390 0.88744 0.95329 1.25484 1.16732 0.76535 0.83620 0.84012 1.90804 1.51413 1.67626 1.31408 1.46113 1.67803 1.13886 1.07883 1.21132 0.95602 0.79141 0.99504 0.89404 1.22090 0.97935 1.00010 1.01459 1.23842 0.95791 1.01702 0.95313 1.22228 0.85337 0.92697 0.94718 1.45981 1.34997 1.00957 1.51932 1.18972 1.05341 0.91800 1.18892 0.90407 1.24775 0.99559 0.95440 1.00739 1.69797 1.40713 0.98893 1.47477 0.86214 0.82045 0.77142 0.80437 1.21238 1.21574 1.21153 1.22531 0.90330 0.91052 0.96134 0.89056 0.89094 0.89659 0.80110 0.81250 0.79993 0.76890 0.91208 0.92715 0.92846 0.89431 0.95363 0.90754 0.93606 0.94231 0.94945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.26 36.00 0.37 -0.48 16 2 C 0.16 2.07 7.22 -82.17 -0.59 1.47 16 3 N -0.31 -3.91 12.58 33.80 0.43 -3.48 16 4 N -0.31 -3.42 3.86 -11.97 -0.05 -3.47 16 5 C 0.17 1.06 11.29 -16.45 -0.19 0.88 16 6 C -0.23 -0.94 10.05 -39.82 -0.40 -1.34 16 7 C 0.18 1.20 11.28 -17.05 -0.19 1.01 16 8 N -0.46 -5.40 10.47 -12.00 -0.13 -5.53 16 9 C 0.29 3.90 7.90 -155.83 -1.23 2.67 16 10 C -0.27 -3.98 5.91 -104.66 -0.62 -4.60 16 11 C 0.61 9.95 7.25 -12.90 -0.09 9.86 16 12 O -0.54 -10.73 16.77 5.17 0.09 -10.64 16 13 N -0.71 -10.51 4.94 -55.14 -0.27 -10.78 16 14 C 0.15 2.48 2.29 -67.93 -0.16 2.33 16 15 H 0.09 1.64 7.48 -51.92 -0.39 1.25 16 16 C -0.16 -2.40 9.44 37.15 0.35 -2.05 16 17 C -0.15 -2.71 3.35 -89.70 -0.30 -3.01 16 18 C 0.18 4.15 6.98 -2.83 -0.02 4.13 16 19 N -0.61 -15.91 3.70 -177.70 -0.66 -16.57 16 20 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.92 -27.63 11.39 55.49 0.63 -27.00 16 24 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.13 2.57 8.38 -2.97 -0.02 2.54 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.96 7.97 -51.93 -0.41 0.55 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.17 -0.02 8.06 -52.49 -0.42 -0.44 16 34 H 0.18 0.49 8.06 -52.48 -0.42 0.06 16 35 H 0.40 5.20 8.58 -40.82 -0.35 4.85 16 36 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 41 H 0.07 1.92 7.16 -51.93 -0.37 1.55 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -37.97 376.95 -8.79 -46.76 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.13 Total: 1.07 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -3.35 Total: 6.57 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -0.05 Total: -66.82 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.97 -8.79 -46.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970891801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.738 kcal (2) G-P(sol) polarization free energy of solvation -37.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds