Wall clock time and date at job start Tue Mar 31 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 120.00244 * 2 1 4 4 H 1.07993 * 120.00133 * 203.60324 * 3 2 1 5 5 C 1.38814 * 119.99582 * 23.60266 * 3 2 1 6 6 N 1.31621 * 120.00321 * 11.42554 * 5 3 2 7 7 Si 1.86805 * 119.99619 * 191.42583 * 5 3 2 8 8 H 1.48497 * 109.47005 * 90.00163 * 7 5 3 9 9 H 1.48502 * 109.46998 * 209.99911 * 7 5 3 10 10 H 1.48496 * 109.46890 * 329.99792 * 7 5 3 11 11 C 1.46501 * 120.00005 * 179.97438 * 2 1 3 12 12 H 1.08999 * 110.64415 * 180.70245 * 11 2 1 13 13 C 1.55158 * 110.71996 * 57.56261 * 11 2 1 14 14 C 1.54908 * 101.58298 * 206.13306 * 13 11 2 15 15 N 1.47420 * 104.83199 * 37.01104 * 14 13 11 16 16 C 1.34777 * 125.65001 * 155.90976 * 15 14 13 17 17 O 1.21555 * 119.99959 * 176.70100 * 16 15 14 18 18 C 1.47858 * 119.99970 * 356.70158 * 16 15 14 19 19 C 1.39611 * 119.97457 * 207.85408 * 18 16 15 20 20 C 1.38089 * 119.69190 * 179.76611 * 19 18 16 21 21 C 1.37849 * 120.10553 * 0.48709 * 20 19 18 22 22 C 1.39018 * 121.04171 * 359.76499 * 21 20 19 23 23 C 1.39124 * 119.09323 * 0.02562 * 22 21 20 24 24 N 1.39591 * 110.21781 * 180.02562 * 22 21 20 25 25 C 1.34353 * 112.24365 * 359.97438 * 24 22 21 26 26 O 1.21292 * 126.42335 * 179.97438 * 25 24 22 27 27 C 1.51197 * 132.65630 * 179.76446 * 21 20 19 28 28 C 1.47322 * 108.73622 * 335.71382 * 15 14 13 29 29 H 1.09003 * 109.47462 * 267.39250 * 1 2 3 30 30 H 1.08995 * 109.46905 * 27.39585 * 1 2 3 31 31 H 1.09007 * 109.46958 * 147.39499 * 1 2 3 32 32 H 0.96995 * 120.00090 * 179.97438 * 6 5 3 33 33 H 1.08997 * 111.00145 * 324.20942 * 13 11 2 34 34 H 1.09008 * 111.00347 * 88.01795 * 13 11 2 35 35 H 1.09005 * 110.36397 * 155.84712 * 14 13 11 36 36 H 1.08992 * 110.36532 * 278.16632 * 14 13 11 37 37 H 1.08003 * 120.15454 * 0.02562 * 19 18 16 38 38 H 1.08005 * 119.94620 * 180.23326 * 20 19 18 39 39 H 1.08006 * 119.99267 * 180.02562 * 23 22 21 40 40 H 0.96999 * 123.87796 * 179.97438 * 24 22 21 41 41 H 1.08998 * 110.50423 * 61.35272 * 27 21 20 42 42 H 1.08993 * 110.50400 * 298.64815 * 27 21 20 43 43 H 1.09001 * 110.06541 * 241.87569 * 28 15 14 44 44 H 1.08997 * 109.85228 * 120.61259 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1619 1.2250 -0.3745 5 6 1.5427 2.3377 0.4814 6 7 0.4061 2.2567 1.1401 7 14 2.3391 4.0030 0.1941 8 1 1.8441 4.5745 -1.0840 9 1 1.9925 4.9168 1.3121 10 1 3.8136 3.8412 0.1259 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0916 0.0130 13 6 1.7979 -2.1339 -1.2238 14 6 2.0902 -3.5633 -0.7034 15 7 1.7030 -3.5337 0.7187 16 6 1.3466 -4.6027 1.4582 17 8 1.1033 -4.4691 2.6417 18 6 1.2516 -5.9378 0.8300 19 6 0.3769 -6.8931 1.3508 20 6 0.2893 -8.1365 0.7565 21 6 1.0698 -8.4354 -0.3397 22 6 1.9504 -7.4992 -0.8694 23 6 2.0395 -6.2435 -0.2773 24 7 2.6218 -8.0366 -1.9690 25 6 2.2475 -9.3013 -2.2251 26 8 2.6649 -10.0092 -3.1172 27 6 1.2065 -9.6767 -1.1922 28 6 1.7743 -2.1431 1.1997 29 1 -0.3634 -0.0468 1.0266 30 1 -0.3633 0.9124 -0.4728 31 1 -0.3633 -0.8658 -0.5538 32 1 -0.0178 3.0615 1.4768 33 1 0.7406 -2.0125 -1.4595 34 1 2.4183 -1.8977 -2.0884 35 1 1.4898 -4.2944 -1.2449 36 1 3.1509 -3.7937 -0.8031 37 1 -0.2315 -6.6593 2.2120 38 1 -0.3888 -8.8774 1.1538 39 1 2.7186 -5.5049 -0.6772 40 1 3.2826 -7.5525 -2.4886 41 1 0.2587 -9.9148 -1.6747 42 1 1.5515 -10.5172 -0.5901 43 1 2.5126 -2.0607 1.9974 44 1 0.7965 -1.8263 1.5626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971593331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:27 Heat of formation + Delta-G solvation = 11.402987 kcal Electronic energy + Delta-G solvation = -27585.961821 eV Core-core repulsion = 23697.770088 eV Total energy + Delta-G solvation = -3888.191733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.84500 -40.10977 -38.51903 -37.47578 -35.82793 -34.94189 -32.91301 -31.63700 -30.08190 -29.88865 -28.93899 -27.64422 -26.09689 -24.28925 -23.26384 -22.50590 -21.98224 -21.71120 -19.82144 -19.25513 -17.88836 -17.50080 -17.11267 -16.65098 -16.44372 -16.01988 -15.65841 -15.07298 -14.95688 -14.74667 -14.35307 -14.18283 -13.79911 -13.50547 -13.46894 -13.31923 -12.98925 -12.68186 -12.63416 -12.33685 -12.24612 -11.91176 -11.84904 -11.24809 -11.18139 -10.95892 -10.85193 -10.64937 -10.62184 -10.47818 -10.34654 -9.97485 -9.91434 -9.81283 -9.23396 -8.60590 -8.52946 -8.35051 -6.86707 -5.83281 -3.30309 0.51612 0.83232 2.00500 2.54384 2.77998 3.06490 3.33455 3.39766 3.41317 3.53029 3.67124 3.93826 4.35366 4.38558 4.43110 4.78663 4.83042 4.89843 4.93637 5.00435 5.17337 5.18372 5.28956 5.36478 5.39484 5.52802 5.56527 5.70155 5.81463 5.90758 5.92966 6.04086 6.12687 6.26425 6.28499 6.31868 6.42623 6.53883 6.60556 6.77932 6.80635 7.30094 7.52566 7.63359 7.66660 7.73096 8.23178 8.31167 9.13082 9.74742 10.23972 11.22605 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.002511 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.142137 B =11146.068953 C =11909.572640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.172 3.828 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.093 3.907 15 N -0.604 5.604 16 C 0.565 3.435 17 O -0.536 6.536 18 C -0.085 4.085 19 C -0.081 4.081 20 C -0.073 4.073 21 C -0.125 4.125 22 C 0.131 3.869 23 C -0.116 4.116 24 N -0.658 5.658 25 C 0.529 3.471 26 O -0.506 6.506 27 C -0.116 4.116 28 C 0.087 3.913 29 H 0.021 0.979 30 H 0.058 0.942 31 H -0.002 1.002 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.415 0.585 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.064 0.936 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 -21.678 -4.892 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.061 3.939 12 H 0.097 0.903 13 C -0.195 4.195 14 C -0.030 4.030 15 N -0.337 5.337 16 C 0.353 3.647 17 O -0.414 6.414 18 C -0.089 4.089 19 C -0.101 4.101 20 C -0.092 4.092 21 C -0.129 4.129 22 C 0.034 3.966 23 C -0.138 4.138 24 N -0.301 5.301 25 C 0.317 3.683 26 O -0.381 6.381 27 C -0.155 4.155 28 C -0.037 4.037 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.016 0.984 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.253 0.747 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.082 0.918 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.873 -21.958 -4.631 22.458 hybrid contribution 0.708 1.274 -0.286 1.486 sum 1.581 -20.684 -4.916 21.319 Atomic orbital electron populations 1.20803 0.82400 0.97121 0.98151 1.43922 1.01919 0.99858 1.84790 1.19232 0.98945 0.85322 1.35703 0.91159 1.25093 0.97780 0.98810 0.97710 1.70066 1.18680 1.27611 1.38425 0.86202 0.78836 0.83796 0.77345 1.21395 1.21669 1.20409 1.21376 0.96466 0.86005 0.90021 0.90285 1.23393 1.03060 0.92890 1.00188 1.22676 0.99154 0.99537 0.81642 1.48536 1.65424 1.08045 1.11679 1.17859 0.77790 0.83105 0.85901 1.90802 1.50462 1.85222 1.14887 1.19694 0.98563 0.94811 0.95810 1.21192 0.97685 0.91718 0.99467 1.20232 0.98291 0.96745 0.93918 1.19990 0.99291 0.95330 0.98250 1.17953 0.94860 0.94271 0.89471 1.21049 1.01846 0.94760 0.96111 1.43728 1.41527 1.15173 1.29719 1.20586 0.82250 0.80689 0.84770 1.90836 1.59013 1.54856 1.33377 1.21108 1.00602 0.97743 0.96064 1.23005 1.02806 0.78358 0.99538 0.96075 0.92329 0.98356 0.93509 0.90305 0.90299 0.90600 0.91357 0.83993 0.84529 0.83717 0.74673 0.85624 0.85659 0.91805 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.76 7.85 59.85 0.47 4.23 16 2 N -0.58 -13.74 2.93 -171.39 -0.50 -14.24 16 3 C -0.26 -6.84 9.60 -15.06 -0.14 -6.98 16 4 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 5 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 6 N -0.90 -25.61 10.71 55.49 0.59 -25.02 16 7 Si 0.91 21.13 29.57 -169.99 -5.03 16.10 16 8 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 C 0.17 3.20 3.43 -66.09 -0.23 2.98 16 12 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 13 C -0.16 -2.26 6.63 -24.58 -0.16 -2.42 16 14 C 0.09 1.10 5.02 -2.53 -0.01 1.09 16 15 N -0.60 -9.25 3.33 -171.39 -0.57 -9.82 16 16 C 0.57 8.87 7.63 -12.32 -0.09 8.77 16 17 O -0.54 -10.38 16.99 5.32 0.09 -10.29 16 18 C -0.08 -1.00 5.68 -105.06 -0.60 -1.60 16 19 C -0.08 -0.82 9.60 -39.12 -0.38 -1.19 16 20 C -0.07 -0.55 10.02 -39.78 -0.40 -0.95 16 21 C -0.13 -0.95 6.35 -104.23 -0.66 -1.62 16 22 C 0.13 1.11 7.10 -83.71 -0.59 0.52 16 23 C -0.12 -1.11 7.95 -38.86 -0.31 -1.42 16 24 N -0.66 -5.05 5.88 -9.72 -0.06 -5.10 16 25 C 0.53 4.70 8.71 -10.84 -0.09 4.60 16 26 O -0.51 -6.26 18.03 5.55 0.10 -6.16 16 27 C -0.12 -0.70 6.88 -28.46 -0.20 -0.90 16 28 C 0.09 1.61 6.53 -2.90 -0.02 1.59 16 29 H 0.02 0.54 7.39 -51.93 -0.38 0.16 16 30 H 0.06 1.51 6.81 -51.93 -0.35 1.15 16 31 H 0.00 -0.04 6.22 -51.92 -0.32 -0.36 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.08 1.25 6.22 -51.93 -0.32 0.93 16 34 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16 35 H 0.08 0.77 6.25 -51.93 -0.32 0.44 16 36 H 0.07 0.66 7.24 -51.93 -0.38 0.29 16 37 H 0.14 1.43 7.89 -52.48 -0.41 1.02 16 38 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 39 H 0.15 1.21 4.63 -52.48 -0.24 0.97 16 40 H 0.41 2.47 8.96 -40.82 -0.37 2.11 16 41 H 0.13 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -33.07 355.91 -9.04 -42.12 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.53 Total: 0.30 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -3.50 Total: 6.75 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.54 Total: -54.18 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.19 Total: -16.45 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.07 -9.04 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971593331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.522 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds