Wall clock time and date at job start Tue Mar 31 2020 05:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36932 * 120.00672 * 2 1 4 4 H 1.07997 * 120.00560 * 153.24895 * 3 2 1 5 5 C 1.38818 * 119.99644 * 332.98595 * 3 2 1 6 6 N 1.31620 * 119.99880 * 349.99295 * 5 3 2 7 7 Si 1.86801 * 119.99687 * 169.99710 * 5 3 2 8 8 H 1.48492 * 109.47368 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.46642 * 119.99929 * 7 5 3 10 10 H 1.48499 * 109.46883 * 239.99164 * 7 5 3 11 11 C 1.46509 * 119.99636 * 180.02562 * 2 1 3 12 12 H 1.08995 * 110.88427 * 176.11925 * 11 2 1 13 13 C 1.55153 * 111.00297 * 299.99927 * 11 2 1 14 14 C 1.54319 * 102.94467 * 153.57572 * 13 11 2 15 15 N 1.47029 * 107.26809 * 337.80978 * 14 13 11 16 16 C 1.34779 * 125.64647 * 178.91605 * 15 14 13 17 17 O 1.21547 * 119.99698 * 174.89501 * 16 15 14 18 18 C 1.47865 * 119.99907 * 354.89947 * 16 15 14 19 19 C 1.39619 * 119.96716 * 188.16835 * 18 16 15 20 20 C 1.38087 * 119.68531 * 179.97438 * 19 18 16 21 21 C 1.37854 * 120.10705 * 0.02562 * 20 19 18 22 22 C 1.39016 * 121.04197 * 359.97438 * 21 20 19 23 23 C 1.39122 * 119.09575 * 359.74629 * 22 21 20 24 24 N 1.39599 * 110.21049 * 180.02562 * 22 21 20 25 25 C 1.34349 * 112.24904 * 359.97438 * 24 22 21 26 26 O 1.21288 * 126.42620 * 180.02562 * 25 24 22 27 27 C 1.51197 * 132.65528 * 179.97438 * 21 20 19 28 28 C 1.47424 * 108.70291 * 358.93748 * 15 14 13 29 29 H 1.09006 * 109.47137 * 92.31592 * 1 2 3 30 30 H 1.08996 * 109.47636 * 212.32003 * 1 2 3 31 31 H 1.09006 * 109.46763 * 332.32068 * 1 2 3 32 32 H 0.96995 * 119.99536 * 180.02562 * 6 5 3 33 33 H 1.09003 * 110.71748 * 271.94223 * 13 11 2 34 34 H 1.09004 * 110.72088 * 35.03709 * 13 11 2 35 35 H 1.09003 * 109.88137 * 97.22230 * 14 13 11 36 36 H 1.08994 * 109.88795 * 218.23578 * 14 13 11 37 37 H 1.07992 * 120.15467 * 359.97438 * 19 18 16 38 38 H 1.08003 * 119.94596 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.99713 * 180.24981 * 23 22 21 40 40 H 0.96999 * 123.87114 * 180.02562 * 24 22 21 41 41 H 1.09002 * 110.50692 * 298.65175 * 27 21 20 42 42 H 1.08998 * 110.50502 * 61.34009 * 27 21 20 43 43 H 1.09002 * 110.36424 * 265.28872 * 28 15 14 44 44 H 1.08995 * 110.36723 * 142.97046 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1430 1.2358 0.4210 5 6 1.5693 2.3224 -0.5461 6 7 0.4529 2.2244 -1.2363 7 14 2.3728 3.9909 -0.3013 8 1 3.6090 3.8314 0.5059 9 1 2.7160 4.5737 -1.6234 10 1 1.4317 4.8941 0.4084 11 6 2.1974 -1.2689 -0.0006 12 1 3.2716 -1.0974 -0.0694 13 6 1.8482 -2.1131 1.2535 14 6 2.1061 -3.5589 0.7796 15 7 2.0262 -3.5578 -0.6885 16 6 2.2139 -4.6279 -1.4861 17 8 2.0323 -4.5322 -2.6842 18 6 2.6407 -5.9183 -0.9038 19 6 2.9996 -6.9765 -1.7408 20 6 3.3978 -8.1789 -1.1907 21 6 3.4398 -8.3326 0.1785 22 6 3.0863 -7.2906 1.0281 23 6 2.6900 -6.0752 0.4794 24 7 3.2114 -7.6905 2.3597 25 6 3.6344 -8.9607 2.4719 26 8 3.8296 -9.5663 3.5045 27 6 3.8216 -9.4944 1.0678 28 6 1.7073 -2.1923 -1.1436 29 1 -0.3634 -0.0415 -1.0269 30 1 -0.3634 -0.8684 0.5494 31 1 -0.3633 0.9101 0.4774 32 1 0.0476 3.0186 -1.6181 33 1 2.5042 -1.8571 2.0855 34 1 0.8032 -1.9762 1.5318 35 1 3.0978 -3.8816 1.0966 36 1 1.3496 -4.2253 1.1938 37 1 2.9660 -6.8553 -2.8134 38 1 3.6759 -9.0004 -1.8343 39 1 2.4161 -5.2546 1.1259 40 1 3.0146 -7.1173 3.1171 41 1 3.1618 -10.3437 0.8907 42 1 4.8613 -9.7764 0.9021 43 1 0.6324 -2.0815 -1.2865 44 1 2.2389 -1.9667 -2.0680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971593333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:30 Heat of formation + Delta-G solvation = 23.942451 kcal Electronic energy + Delta-G solvation = -27568.374865 eV Core-core repulsion = 23680.726883 eV Total energy + Delta-G solvation = -3887.647981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84633 -40.18956 -38.50053 -37.51316 -35.81708 -35.02067 -32.93424 -31.65452 -30.12172 -29.97194 -28.93053 -27.68642 -26.11226 -24.38333 -23.33371 -22.51016 -21.87080 -21.71190 -19.88335 -19.40885 -17.83074 -17.57712 -17.11632 -16.57294 -16.43760 -15.97038 -15.75260 -15.06314 -14.87413 -14.70664 -14.36164 -14.12132 -13.86422 -13.52120 -13.44818 -13.31942 -12.95203 -12.83397 -12.50348 -12.46439 -12.29861 -12.10216 -11.87636 -11.16166 -11.06284 -10.96639 -10.78506 -10.63331 -10.54045 -10.50158 -10.34208 -9.97419 -9.90499 -9.82265 -9.25671 -8.66000 -8.54006 -8.34633 -6.82960 -5.85243 -3.34966 0.49215 0.85389 2.00708 2.56841 2.78680 3.05074 3.32023 3.39626 3.41333 3.60339 3.66576 3.94555 4.36055 4.37532 4.44369 4.76325 4.82781 4.90001 4.93840 5.03360 5.08257 5.17483 5.28799 5.30878 5.38752 5.54665 5.58957 5.65462 5.79275 5.89967 5.94500 6.04728 6.13983 6.21403 6.27507 6.33354 6.41165 6.53358 6.58757 6.73399 6.79473 7.25870 7.53691 7.60314 7.64614 7.72055 8.21657 8.31336 9.11979 9.72750 10.23379 11.20641 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.002528 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.087694 B =11073.700030 C =11846.243765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.583 5.583 3 C -0.264 4.264 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.172 3.828 12 H 0.079 0.921 13 C -0.158 4.158 14 C 0.092 3.908 15 N -0.605 5.605 16 C 0.567 3.433 17 O -0.536 6.536 18 C -0.088 4.088 19 C -0.079 4.079 20 C -0.076 4.076 21 C -0.125 4.125 22 C 0.130 3.870 23 C -0.142 4.142 24 N -0.658 5.658 25 C 0.529 3.471 26 O -0.506 6.506 27 C -0.117 4.117 28 C 0.088 3.912 29 H 0.024 0.976 30 H -0.001 1.001 31 H 0.053 0.947 32 H 0.254 0.746 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.168 0.832 40 H 0.415 0.585 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.071 0.929 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -21.231 4.597 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.303 5.303 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.192 4.192 6 N -0.545 5.545 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.215 1.215 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.198 4.198 14 C -0.031 4.031 15 N -0.338 5.338 16 C 0.355 3.645 17 O -0.415 6.415 18 C -0.092 4.092 19 C -0.099 4.099 20 C -0.095 4.095 21 C -0.128 4.128 22 C 0.033 3.967 23 C -0.162 4.162 24 N -0.301 5.301 25 C 0.317 3.683 26 O -0.381 6.381 27 C -0.156 4.156 28 C -0.036 4.036 29 H 0.042 0.958 30 H 0.017 0.983 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.185 0.815 40 H 0.253 0.747 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.089 0.911 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.779 -21.489 4.386 22.446 hybrid contribution 0.158 1.235 0.405 1.309 sum 4.937 -20.254 4.791 21.391 Atomic orbital electron populations 1.20797 0.82525 0.96936 0.98321 1.43824 1.01820 0.99799 1.84824 1.19233 1.00960 0.85939 1.33208 0.91266 1.25174 0.97864 0.99039 0.97095 1.70052 1.20149 1.28165 1.36172 0.86152 0.78750 0.83939 0.77471 1.20189 1.21559 1.21522 1.21486 0.96521 0.85851 0.89974 0.90268 1.23297 1.03155 0.92493 1.00848 1.22496 1.00467 0.99216 0.80875 1.48407 1.68480 1.09806 1.07061 1.17839 0.78123 0.82663 0.85838 1.90787 1.52131 1.84050 1.14484 1.19700 1.02102 0.94812 0.92613 1.21230 0.96718 0.91122 1.00810 1.20231 0.99156 0.97762 0.92305 1.20025 1.03857 0.95023 0.93906 1.18009 1.00202 0.95019 0.83435 1.22064 1.01662 0.96912 0.95581 1.43728 1.64602 1.14961 1.06847 1.20578 0.75282 0.81026 0.91430 1.90834 1.50875 1.62259 1.34142 1.21110 1.05589 0.98208 0.90654 1.23138 1.01379 0.78698 1.00399 0.95780 0.98263 0.92789 0.93529 0.90384 0.90264 0.90861 0.91144 0.83842 0.84596 0.81503 0.74670 0.85676 0.85661 0.91050 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.65 7.65 59.84 0.46 4.11 16 2 N -0.58 -13.56 2.95 -171.03 -0.50 -14.07 16 3 C -0.26 -6.85 9.57 -15.06 -0.14 -6.99 16 4 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 5 C 0.01 0.21 5.10 -17.43 -0.09 0.12 16 6 N -0.90 -25.38 10.84 55.49 0.60 -24.78 16 7 Si 0.91 21.04 29.57 -169.99 -5.03 16.01 16 8 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.17 3.22 3.54 -65.78 -0.23 2.98 16 12 H 0.08 1.50 7.96 -51.93 -0.41 1.09 16 13 C -0.16 -2.24 6.52 -24.90 -0.16 -2.41 16 14 C 0.09 1.08 4.87 -3.06 -0.01 1.06 16 15 N -0.60 -9.16 3.33 -176.36 -0.59 -9.75 16 16 C 0.57 8.81 7.80 -12.32 -0.10 8.72 16 17 O -0.54 -10.23 16.66 5.32 0.09 -10.14 16 18 C -0.09 -1.05 5.86 -105.05 -0.62 -1.66 16 19 C -0.08 -0.80 9.60 -39.12 -0.38 -1.18 16 20 C -0.08 -0.58 10.02 -39.78 -0.40 -0.98 16 21 C -0.12 -0.97 6.35 -104.23 -0.66 -1.63 16 22 C 0.13 1.12 7.10 -83.71 -0.59 0.53 16 23 C -0.14 -1.37 8.63 -38.86 -0.34 -1.70 16 24 N -0.66 -5.15 5.88 -9.72 -0.06 -5.21 16 25 C 0.53 4.77 8.71 -10.85 -0.09 4.68 16 26 O -0.51 -6.33 18.03 5.55 0.10 -6.23 16 27 C -0.12 -0.72 6.88 -28.46 -0.20 -0.92 16 28 C 0.09 1.61 6.44 -2.53 -0.02 1.59 16 29 H 0.02 0.60 7.56 -51.93 -0.39 0.21 16 30 H 0.00 -0.02 6.40 -51.93 -0.33 -0.35 16 31 H 0.05 1.35 7.04 -51.93 -0.37 0.99 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.18 6.38 -51.93 -0.33 0.85 16 35 H 0.07 0.71 6.67 -51.93 -0.35 0.37 16 36 H 0.07 0.68 6.79 -51.93 -0.35 0.33 16 37 H 0.14 1.46 7.67 -52.49 -0.40 1.06 16 38 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.17 1.43 2.73 -58.61 -0.16 1.27 16 40 H 0.41 2.53 8.96 -40.82 -0.37 2.17 16 41 H 0.13 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 44 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -32.78 355.06 -9.08 -41.86 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.48 Total: 0.63 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -3.57 Total: 6.32 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.55 Total: -53.80 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.19 Total: -16.37 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.78 -9.08 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971593333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.806 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds