Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30065 * 124.94262 * 2 1 4 4 C 1.35777 * 109.43311 * 180.02562 * 3 2 1 5 5 C 1.39484 * 133.74584 * 180.31346 * 4 3 2 6 6 C 1.39670 * 118.05430 * 180.20190 * 5 4 3 7 7 C 1.47687 * 120.38648 * 179.74354 * 6 5 4 8 8 O 1.21566 * 120.00209 * 171.65769 * 7 6 5 9 9 N 1.34781 * 119.99415 * 351.65150 * 7 6 5 10 10 C 1.47016 * 125.65219 * 5.44986 * 9 7 6 11 11 C 1.54323 * 107.27106 * 181.09284 * 10 9 7 12 12 C 1.55155 * 102.94374 * 22.19191 * 11 10 9 13 13 H 1.09003 * 111.03525 * 82.58567 * 12 11 10 14 14 N 1.46505 * 111.00426 * 206.42447 * 12 11 10 15 15 C 1.46493 * 119.99765 * 53.65077 * 14 12 11 16 16 C 1.36930 * 119.99803 * 233.65268 * 14 12 11 17 17 H 1.08003 * 120.00307 * 339.50563 * 16 14 12 18 18 C 1.38810 * 119.99899 * 159.22917 * 16 14 12 19 19 N 1.31615 * 120.00367 * 346.79550 * 18 16 14 20 20 Si 1.86809 * 120.00024 * 166.79110 * 18 16 14 21 21 H 1.48499 * 109.46523 * 94.97726 * 20 18 16 22 22 H 1.48489 * 109.47315 * 214.97665 * 20 18 16 23 23 H 1.48497 * 109.46876 * 334.97940 * 20 18 16 24 24 C 1.47426 * 125.64278 * 185.48867 * 9 7 6 25 25 C 1.39985 * 119.23240 * 359.47372 * 6 5 4 26 26 N 1.31386 * 121.15950 * 0.24667 * 25 6 5 27 27 C 1.32542 * 121.79369 * 0.02562 * 26 25 6 28 28 N 1.36167 * 124.94492 * 180.02562 * 2 1 3 29 29 H 0.97005 * 126.23537 * 359.95225 * 28 2 1 30 30 H 1.08997 * 109.47301 * 269.98024 * 1 2 3 31 31 H 1.09000 * 109.46985 * 29.98368 * 1 2 3 32 32 H 1.08995 * 109.47019 * 149.97797 * 1 2 3 33 33 H 1.08000 * 120.97160 * 359.97225 * 5 4 3 34 34 H 1.08997 * 109.88509 * 300.50956 * 10 9 7 35 35 H 1.09004 * 109.88164 * 61.67237 * 10 9 7 36 36 H 1.09005 * 110.72052 * 263.82900 * 11 10 9 37 37 H 1.08995 * 110.72060 * 140.55790 * 11 10 9 38 38 H 1.09005 * 109.47056 * 263.99905 * 15 14 12 39 39 H 1.08999 * 109.47439 * 23.99812 * 15 14 12 40 40 H 1.09007 * 109.47244 * 144.00316 * 15 14 12 41 41 H 0.96998 * 120.00124 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.37372 * 36.99963 * 24 9 7 43 43 H 1.08998 * 110.45939 * 274.72271 * 24 9 7 44 44 H 1.08001 * 119.41831 * 180.27817 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2519 1.0662 0.0000 4 6 3.5603 0.7031 -0.0006 5 6 4.7591 1.4162 0.0047 6 6 5.9537 0.6926 -0.0023 7 6 7.2527 1.3954 -0.0030 8 8 8.2834 0.7678 0.1437 9 7 7.2953 2.7326 -0.1662 10 6 6.1288 3.6244 -0.2403 11 6 6.6603 5.0568 -0.4577 12 6 8.0701 4.8168 -1.0596 13 1 8.0113 4.6324 -2.1323 14 7 8.9627 5.9421 -0.7711 15 6 9.1458 6.3966 0.6094 16 6 9.6258 6.5691 -1.7920 17 1 9.7665 6.0631 -2.7358 18 6 10.1121 7.8572 -1.6159 19 7 9.7213 8.5728 -0.5828 20 14 11.3216 8.5752 -2.8453 21 1 10.5836 9.3723 -3.8579 22 1 12.2885 9.4503 -2.1352 23 1 12.0540 7.4737 -3.5202 24 6 8.5194 3.5431 -0.3010 25 6 5.9057 -0.7064 -0.0031 26 7 4.7587 -1.3472 -0.0021 27 6 3.5996 -0.7043 -0.0009 28 7 2.2869 -1.1162 -0.0005 29 1 1.9740 -2.0344 -0.0003 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3633 -0.8897 -0.5142 33 1 4.7633 2.4961 0.0102 34 1 5.4928 3.3341 -1.0765 35 1 5.5651 3.5755 0.6913 36 1 6.7314 5.5898 0.4904 37 1 6.0284 5.6001 -1.1603 38 1 8.4768 7.2340 0.8080 39 1 8.9183 5.5796 1.2941 40 1 10.1784 6.7146 0.7534 41 1 10.0614 9.4728 -0.4595 42 1 9.2704 3.0032 -0.8776 43 1 8.9126 3.8054 0.6812 44 1 6.8277 -1.2688 -0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971656139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = 106.168970 kcal Electronic energy + Delta-G solvation = -27533.132968 eV Core-core repulsion = 23681.343347 eV Total energy + Delta-G solvation = -3851.789621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.73021 -40.23794 -38.39616 -37.31527 -35.05480 -34.01393 -32.20095 -31.91457 -31.20842 -29.89273 -28.41576 -27.98521 -26.07996 -24.87983 -23.47343 -22.93478 -22.26491 -21.54385 -19.86344 -19.35880 -18.88517 -17.48223 -17.07152 -16.76777 -16.28343 -16.00977 -15.85563 -15.44445 -14.71571 -14.19001 -14.07719 -13.92592 -13.77156 -13.49866 -13.44811 -13.13968 -13.04716 -12.68703 -12.50450 -12.40057 -12.28448 -11.92922 -11.48787 -11.38055 -11.14581 -10.94313 -10.73165 -10.52060 -10.49018 -10.28060 -10.09386 -9.88854 -9.83757 -9.40182 -9.18343 -8.79161 -8.61096 -8.40504 -6.85257 -5.77260 -3.23075 0.43286 0.61254 2.10578 2.34419 2.84979 3.05368 3.36626 3.44004 3.46327 3.54638 3.67420 4.00396 4.31215 4.43509 4.46611 4.62711 4.68168 4.81887 4.90906 4.92623 5.06674 5.18818 5.28216 5.30245 5.41842 5.48596 5.57717 5.66623 5.70419 5.79231 5.88199 5.96762 6.19880 6.25790 6.33516 6.48255 6.60195 6.69536 6.75422 6.84114 7.32661 7.35466 7.50293 7.66428 7.69357 7.77797 8.22264 8.32871 9.17487 9.79855 10.27037 11.27253 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.002504 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.354735 B =11180.527706 C =11925.834692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.293 3.707 3 N -0.475 5.475 4 C -0.005 4.005 5 C -0.017 4.017 6 C -0.188 4.188 7 C 0.579 3.421 8 O -0.539 6.539 9 N -0.604 5.604 10 C 0.088 3.912 11 C -0.153 4.153 12 C 0.173 3.827 13 H 0.080 0.920 14 N -0.585 5.585 15 C 0.159 3.841 16 C -0.259 4.259 17 H 0.071 0.929 18 C 0.004 3.996 19 N -0.906 5.906 20 Si 0.906 3.094 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.086 3.914 25 C 0.196 3.804 26 N -0.488 5.488 27 C 0.253 3.747 28 N -0.586 5.586 29 H 0.428 0.572 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.181 0.819 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.002 0.998 40 H 0.044 0.956 41 H 0.253 0.747 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.053 -17.649 2.367 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.025 3.975 3 N -0.196 5.196 4 C -0.124 4.124 5 C -0.043 4.043 6 C -0.196 4.196 7 C 0.368 3.632 8 O -0.418 6.418 9 N -0.336 5.336 10 C -0.035 4.035 11 C -0.193 4.193 12 C 0.062 3.938 13 H 0.098 0.902 14 N -0.305 5.305 15 C 0.015 3.985 16 C -0.388 4.388 17 H 0.089 0.911 18 C -0.195 4.195 19 N -0.551 5.551 20 Si 0.736 3.264 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.204 1.204 24 C -0.038 4.038 25 C 0.027 3.973 26 N -0.201 5.201 27 C 0.017 3.983 28 N -0.202 5.202 29 H 0.267 0.733 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.197 0.803 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -18.750 -17.840 2.509 26.002 hybrid contribution 0.630 0.033 -0.535 0.827 sum -18.119 -17.807 1.975 25.481 Atomic orbital electron populations 1.20438 0.83314 1.05147 1.04658 1.23744 0.95851 0.80295 0.97612 1.70471 1.00285 1.27405 1.21433 1.19614 0.92867 0.91551 1.08392 1.22479 0.88067 1.03371 0.90392 1.20720 0.93666 0.95595 1.09591 1.17433 0.87836 0.80628 0.77345 1.90783 1.34666 1.65651 1.50685 1.48341 1.09637 1.05215 1.70437 1.22573 0.88716 0.91651 1.00521 1.23299 0.99874 0.93077 1.03055 1.21409 0.88094 0.87028 0.97221 0.90215 1.43836 1.48968 1.33696 1.04046 1.20841 1.00808 0.94337 0.82508 1.19237 1.29348 0.95731 0.94523 0.91110 1.24985 1.00679 0.95771 0.98056 1.70080 1.44950 1.09753 1.30281 0.86216 0.80908 0.78849 0.80429 1.21485 1.21569 1.20411 1.23091 0.86086 0.92779 1.01878 1.22769 0.94297 0.90302 0.89912 1.66526 0.95749 1.40359 1.17449 1.19177 0.86187 0.91452 1.01517 1.42710 1.03700 1.10600 1.63143 0.73268 0.88934 0.88014 0.89849 0.80261 0.90800 0.91001 0.90217 0.90164 0.94765 0.97998 0.93724 0.93677 0.90641 0.91002 0.80242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.29 2.40 8.08 -154.74 -1.25 1.15 16 3 N -0.48 -5.62 11.29 -8.20 -0.09 -5.71 16 4 C 0.00 -0.06 7.23 -84.69 -0.61 -0.67 16 5 C -0.02 -0.21 8.71 -38.58 -0.34 -0.55 16 6 C -0.19 -2.56 5.88 -104.85 -0.62 -3.18 16 7 C 0.58 9.30 7.80 -12.40 -0.10 9.20 16 8 O -0.54 -10.15 16.68 5.31 0.09 -10.06 16 9 N -0.60 -9.49 3.33 -172.60 -0.57 -10.06 16 10 C 0.09 1.17 4.87 -3.07 -0.01 1.16 16 11 C -0.15 -2.44 6.51 -24.90 -0.16 -2.61 16 12 C 0.17 3.33 3.54 -65.78 -0.23 3.10 16 13 H 0.08 1.54 7.94 -51.93 -0.41 1.13 16 14 N -0.59 -13.93 2.96 -171.03 -0.51 -14.44 16 15 C 0.16 3.75 7.59 59.84 0.45 4.20 16 16 C -0.26 -6.86 9.64 -15.06 -0.15 -7.01 16 17 H 0.07 1.83 7.84 -52.48 -0.41 1.42 16 18 C 0.00 0.10 5.11 -17.43 -0.09 0.01 16 19 N -0.91 -25.63 10.58 55.49 0.59 -25.04 16 20 Si 0.91 21.45 29.58 -169.99 -5.03 16.42 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 C 0.09 1.54 6.44 -2.53 -0.02 1.53 16 25 C 0.20 2.52 10.74 -17.09 -0.18 2.34 16 26 N -0.49 -6.23 10.36 -11.96 -0.12 -6.36 16 27 C 0.25 3.06 8.45 -155.64 -1.31 1.74 16 28 N -0.59 -4.83 6.20 -9.44 -0.06 -4.89 16 29 H 0.43 2.04 8.96 -40.82 -0.37 1.67 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.18 2.08 2.93 -53.67 -0.16 1.93 16 34 H 0.07 0.87 6.67 -51.93 -0.35 0.53 16 35 H 0.07 0.84 6.80 -51.93 -0.35 0.49 16 36 H 0.08 1.35 7.07 -51.93 -0.37 0.99 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.03 0.87 7.34 -51.93 -0.38 0.48 16 39 H 0.00 0.03 6.33 -51.93 -0.33 -0.30 16 40 H 0.04 1.15 7.25 -51.93 -0.38 0.77 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 43 H 0.07 1.36 6.34 -51.93 -0.33 1.03 16 44 H 0.18 2.08 7.66 -52.49 -0.40 1.68 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -33.62 355.50 -10.07 -43.69 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.48 Total: 0.56 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: -4.24 Total: 10.54 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -0.77 Total: -66.50 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.62 -10.07 -43.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971656139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.859 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds