Wall clock time and date at job start Tue Mar 31 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30286 * 124.97034 * 2 1 4 4 C 1.34659 * 109.66911 * 179.79031 * 3 2 1 5 5 C 1.40833 * 107.25861 * 0.38628 * 4 3 2 6 6 N 1.32109 * 120.46448 * 179.81489 * 5 4 3 7 7 C 1.31735 * 121.94518 * 359.75058 * 6 5 4 8 8 C 1.38330 * 121.54727 * 0.02562 * 7 6 5 9 9 C 1.39637 * 119.37936 * 359.97438 * 8 7 6 10 10 C 1.47759 * 121.07534 * 179.97438 * 9 8 7 11 11 O 1.21567 * 119.99990 * 137.39847 * 10 9 8 12 12 N 1.34780 * 120.00492 * 317.39955 * 10 9 8 13 13 C 1.47016 * 125.64483 * 354.63523 * 12 10 9 14 14 C 1.54323 * 107.27001 * 181.09357 * 13 12 10 15 15 C 1.55149 * 102.94301 * 22.18691 * 14 13 12 16 16 H 1.09002 * 111.03247 * 82.59137 * 15 14 13 17 17 N 1.46501 * 111.00679 * 206.42121 * 15 14 13 18 18 C 1.46507 * 119.99629 * 53.65712 * 17 15 14 19 19 C 1.36929 * 120.00288 * 233.65204 * 17 15 14 20 20 H 1.07994 * 120.00101 * 332.75633 * 19 17 15 21 21 C 1.38819 * 120.00013 * 152.48251 * 19 17 15 22 22 N 1.31616 * 119.99372 * 349.79764 * 21 19 17 23 23 Si 1.86793 * 120.00084 * 169.79862 * 21 19 17 24 24 H 1.48495 * 109.47395 * 90.00141 * 23 21 19 25 25 H 1.48506 * 109.46739 * 210.00125 * 23 21 19 26 26 H 1.48501 * 109.47273 * 329.99509 * 23 21 19 27 27 C 1.47426 * 125.64883 * 174.66876 * 12 10 9 28 28 N 1.35993 * 124.97453 * 180.02562 * 2 1 3 29 29 H 0.97003 * 126.35356 * 359.95512 * 28 2 1 30 30 H 1.09006 * 109.47379 * 269.95584 * 1 2 3 31 31 H 1.08996 * 109.47582 * 29.95838 * 1 2 3 32 32 H 1.09003 * 109.47014 * 149.95581 * 1 2 3 33 33 H 1.08000 * 119.22255 * 179.97438 * 7 6 5 34 34 H 1.08007 * 120.31029 * 179.97438 * 8 7 6 35 35 H 1.09005 * 109.88461 * 300.50965 * 13 12 10 36 36 H 1.08998 * 109.88655 * 61.51923 * 13 12 10 37 37 H 1.09007 * 110.71701 * 263.82386 * 14 13 12 38 38 H 1.08997 * 110.72265 * 140.55665 * 14 13 12 39 39 H 1.08999 * 109.46702 * 272.08014 * 18 17 15 40 40 H 1.09005 * 109.47181 * 32.07264 * 18 17 15 41 41 H 1.08993 * 109.47251 * 152.07920 * 18 17 15 42 42 H 0.97005 * 119.99585 * 180.02562 * 22 21 19 43 43 H 1.08999 * 110.36685 * 37.00169 * 27 12 10 44 44 H 1.08997 * 110.36968 * 274.67885 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5525 0.7123 0.0046 5 6 3.6006 -0.6952 -0.0013 6 7 4.7616 -1.3257 -0.0022 7 6 5.9076 -0.6760 -0.0025 8 6 5.9558 0.7064 -0.0014 9 6 4.7637 1.4335 -0.0004 10 6 4.7715 2.9111 0.0014 11 8 3.9997 3.5238 -0.7104 12 7 5.6342 3.5795 0.7922 13 6 6.5395 2.9719 1.7784 14 6 7.3116 4.1209 2.4605 15 6 6.3926 5.3477 2.2206 16 1 5.5947 5.3897 2.9621 17 7 7.1672 6.5912 2.2160 18 6 8.3251 6.7295 1.3291 19 6 6.8089 7.6241 3.0404 20 1 5.7805 7.7356 3.3506 21 6 7.7686 8.5247 3.4819 22 7 9.0453 8.2781 3.2785 23 14 7.2479 10.0863 4.3647 24 1 7.1757 9.8287 5.8254 25 1 8.2402 11.1590 4.0997 26 1 5.9141 10.5130 3.8708 27 6 5.8259 5.0412 0.8119 28 7 2.2864 -1.1143 -0.0005 29 1 1.9759 -2.0333 -0.0003 30 1 -0.3634 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5131 32 1 -0.3633 -0.8896 -0.5145 33 1 6.8311 -1.2360 -0.0029 34 1 6.9067 1.2187 -0.0012 35 1 5.9625 2.4209 2.5212 36 1 7.2363 2.2999 1.2775 37 1 8.2823 4.2677 1.9867 38 1 7.4271 3.9281 3.5270 39 1 9.2154 6.3528 1.8326 40 1 8.1544 6.1579 0.4168 41 1 8.4670 7.7806 1.0781 42 1 9.7160 8.9072 3.5874 43 1 4.8733 5.5507 0.6671 44 1 6.5380 5.3408 0.0431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971990518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:11 Heat of formation + Delta-G solvation = 90.808581 kcal Electronic energy + Delta-G solvation = -27757.770871 eV Core-core repulsion = 23905.315174 eV Total energy + Delta-G solvation = -3852.455697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.70198 -39.90213 -38.47192 -37.32265 -34.81149 -33.91483 -32.07468 -31.82295 -31.21515 -29.75692 -28.42197 -27.86915 -26.04256 -24.78599 -23.41835 -22.88301 -22.22030 -21.40378 -19.99102 -19.30137 -18.24845 -17.72300 -17.08030 -16.98955 -16.21455 -15.85143 -15.67559 -15.02862 -14.87247 -14.35079 -14.10539 -13.84291 -13.78634 -13.51189 -13.34722 -13.12432 -12.66858 -12.65092 -12.49329 -12.42090 -12.32328 -11.82329 -11.35529 -11.30257 -11.13678 -10.95605 -10.76974 -10.48561 -10.47878 -10.23965 -10.06973 -9.92282 -9.80034 -9.34060 -9.13305 -8.67200 -8.57593 -8.31319 -6.74858 -5.79189 -3.28152 0.25440 0.90718 2.16291 2.44281 2.84739 3.10096 3.36833 3.43660 3.46393 3.62652 3.66101 4.07255 4.33102 4.45890 4.49010 4.61580 4.79431 4.88942 5.02922 5.04214 5.12056 5.25618 5.39606 5.41188 5.49452 5.57113 5.58948 5.68144 5.75011 5.84165 5.94154 6.04904 6.27350 6.32044 6.39818 6.56426 6.66078 6.77386 6.81027 6.90136 7.32233 7.49355 7.54561 7.65452 7.74108 7.78541 8.31194 8.38655 9.18952 9.79813 10.30825 11.26945 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.002669 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.431977 B =10488.041993 C =11241.470418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.297 3.703 3 N -0.467 5.467 4 C 0.051 3.949 5 C 0.235 3.765 6 N -0.473 5.473 7 C 0.134 3.866 8 C -0.152 4.152 9 C -0.020 4.020 10 C 0.571 3.429 11 O -0.517 6.517 12 N -0.606 5.606 13 C 0.098 3.902 14 C -0.150 4.150 15 C 0.173 3.827 16 H 0.078 0.922 17 N -0.583 5.583 18 C 0.159 3.841 19 C -0.261 4.261 20 H 0.068 0.932 21 C 0.008 3.992 22 N -0.904 5.904 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.278 1.278 27 C 0.086 3.914 28 N -0.586 5.586 29 H 0.428 0.572 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.025 0.975 40 H -0.001 1.001 41 H 0.051 0.949 42 H 0.254 0.746 43 H 0.074 0.926 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.825 -22.141 -5.711 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.030 3.970 3 N -0.187 5.187 4 C -0.073 4.073 5 C -0.002 4.002 6 N -0.186 5.186 7 C -0.032 4.032 8 C -0.175 4.175 9 C -0.033 4.033 10 C 0.358 3.642 11 O -0.392 6.392 12 N -0.340 5.340 13 C -0.025 4.025 14 C -0.190 4.190 15 C 0.062 3.938 16 H 0.097 0.903 17 N -0.304 5.304 18 C 0.015 3.985 19 C -0.391 4.391 20 H 0.086 0.914 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.204 1.204 27 C -0.038 4.038 28 N -0.202 5.202 29 H 0.268 0.732 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.190 0.810 34 H 0.172 0.828 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.018 0.982 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.446 -21.689 -6.104 24.835 hybrid contribution 0.184 0.276 0.552 0.644 sum -10.262 -21.413 -5.552 24.385 Atomic orbital electron populations 1.20448 0.83275 1.05160 1.04694 1.23893 0.96016 0.80156 0.96938 1.70262 1.00554 1.27158 1.20757 1.19208 0.92173 0.91083 1.04797 1.18858 0.86205 0.90761 1.04357 1.66193 0.96035 1.41474 1.14913 1.22502 0.94189 0.91235 0.95269 1.22327 0.98211 0.95384 1.01578 1.19600 0.90849 0.93936 0.98953 1.17538 0.80214 0.85798 0.80644 1.90819 1.38302 1.68674 1.41411 1.48353 1.38539 1.09100 1.38053 1.22252 0.92303 0.97042 0.90911 1.23202 1.00064 0.95094 1.00639 1.21435 0.93470 0.86127 0.92749 0.90348 1.43763 1.31739 1.10510 1.44346 1.20786 0.88994 0.99542 0.89200 1.19200 0.92786 1.03654 1.23464 0.91431 1.25124 0.95117 1.00115 0.98793 1.70040 0.99084 1.36090 1.49594 0.86241 0.77778 0.82875 0.79535 1.21337 1.21564 1.20373 1.23031 1.01556 0.77784 1.01417 1.42726 1.03578 1.10489 1.63384 0.73238 0.88852 0.87923 0.89847 0.80952 0.82790 0.91964 0.91685 0.90346 0.90452 0.95700 0.98227 0.93028 0.93624 0.90747 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.51 36.00 0.38 -0.02 16 2 C 0.30 3.05 8.08 -154.72 -1.25 1.80 16 3 N -0.47 -7.14 11.23 -8.07 -0.09 -7.23 16 4 C 0.05 0.78 6.92 -84.61 -0.59 0.19 16 5 C 0.24 2.97 8.46 -155.65 -1.32 1.66 16 6 N -0.47 -5.53 10.35 -12.30 -0.13 -5.66 16 7 C 0.13 1.29 11.14 -17.56 -0.20 1.10 16 8 C -0.15 -1.69 8.56 -39.03 -0.33 -2.02 16 9 C -0.02 -0.31 5.46 -104.45 -0.57 -0.88 16 10 C 0.57 10.27 7.48 -12.37 -0.09 10.17 16 11 O -0.52 -11.21 17.22 5.31 0.09 -11.12 16 12 N -0.61 -10.18 3.33 -171.67 -0.57 -10.75 16 13 C 0.10 1.36 5.89 -3.07 -0.02 1.34 16 14 C -0.15 -2.48 6.51 -24.90 -0.16 -2.64 16 15 C 0.17 3.46 3.54 -65.79 -0.23 3.23 16 16 H 0.08 1.62 7.96 -51.93 -0.41 1.20 16 17 N -0.58 -14.14 2.95 -171.03 -0.50 -14.65 16 18 C 0.16 3.76 7.72 59.85 0.46 4.22 16 19 C -0.26 -7.04 9.56 -15.06 -0.14 -7.18 16 20 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 21 C 0.01 0.21 5.10 -17.43 -0.09 0.12 16 22 N -0.90 -25.66 10.89 55.49 0.60 -25.06 16 23 Si 0.91 21.54 29.57 -169.99 -5.03 16.51 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 C 0.09 1.63 6.51 -2.53 -0.02 1.61 16 28 N -0.59 -5.40 6.23 -9.43 -0.06 -5.46 16 29 H 0.43 2.28 8.96 -40.82 -0.37 1.91 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.15 1.38 6.00 -52.48 -0.31 1.07 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.72 5.66 -51.93 -0.29 0.43 16 37 H 0.08 1.35 7.01 -51.93 -0.36 0.99 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.02 0.62 7.53 -51.93 -0.39 0.23 16 40 H 0.00 -0.01 6.29 -51.93 -0.33 -0.34 16 41 H 0.05 1.33 7.09 -51.93 -0.37 0.96 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 43 H 0.07 1.51 7.99 -51.93 -0.41 1.10 16 44 H 0.07 1.37 6.26 -51.93 -0.33 1.05 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -35.99 360.21 -10.08 -46.07 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.66 Total: -0.78 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: -4.17 Total: 12.69 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.75 Total: -68.79 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.99 -10.08 -46.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971990518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.876 kcal (2) G-P(sol) polarization free energy of solvation -35.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds