Wall clock time and date at job start Tue Mar 31 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39961 * 120.32364 * 2 1 4 4 N 1.31501 * 120.10665 * 180.26384 * 3 2 1 5 5 C 1.33378 * 120.85610 * 359.51002 * 4 3 2 6 6 C 1.40803 * 132.48371 * 180.17827 * 5 4 3 7 7 C 1.46584 * 126.53732 * 0.28748 * 6 5 4 8 8 O 1.21709 * 120.00127 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99833 * 179.97438 * 7 6 5 10 10 C 1.47020 * 125.64685 * 0.03077 * 9 7 6 11 11 C 1.54325 * 107.26944 * 181.01941 * 10 9 7 12 12 C 1.55164 * 102.94103 * 22.19222 * 11 10 9 13 13 H 1.08994 * 111.00558 * 82.60699 * 12 11 10 14 14 N 1.46502 * 110.99956 * 206.42463 * 12 11 10 15 15 C 1.46501 * 120.00093 * 60.00253 * 14 12 11 16 16 C 1.36941 * 119.99780 * 239.99609 * 14 12 11 17 17 H 1.07998 * 119.99792 * 328.43581 * 16 14 12 18 18 C 1.38807 * 119.99782 * 148.43485 * 16 14 12 19 19 N 1.31620 * 119.99664 * 153.91272 * 18 16 14 20 20 Si 1.86799 * 120.00082 * 333.90674 * 18 16 14 21 21 H 1.48494 * 109.47047 * 94.93554 * 20 18 16 22 22 H 1.48504 * 109.46886 * 214.93191 * 20 18 16 23 23 H 1.48497 * 109.47242 * 334.93247 * 20 18 16 24 24 C 1.47421 * 125.64561 * 179.71696 * 9 7 6 25 25 C 1.40645 * 106.92201 * 180.28976 * 6 5 4 26 26 N 1.30697 * 108.72948 * 359.97438 * 25 6 5 27 27 N 1.36600 * 120.79197 * 0.49830 * 5 4 3 28 28 C 1.35753 * 120.32213 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47293 * 269.97699 * 1 2 3 30 30 H 1.08996 * 109.47288 * 29.97667 * 1 2 3 31 31 H 1.09008 * 109.47465 * 149.97383 * 1 2 3 32 32 H 1.08001 * 119.94236 * 0.04708 * 3 2 1 33 33 H 1.09008 * 109.88130 * 300.43415 * 10 9 7 34 34 H 1.09000 * 109.88723 * 61.44560 * 10 9 7 35 35 H 1.09006 * 110.72043 * 140.55218 * 11 10 9 36 36 H 1.08998 * 110.71916 * 263.65095 * 11 10 9 37 37 H 1.08999 * 109.47332 * 95.53253 * 15 14 12 38 38 H 1.09007 * 109.46835 * 215.53322 * 15 14 12 39 39 H 1.09004 * 109.46915 * 335.52766 * 15 14 12 40 40 H 0.97006 * 119.99720 * 180.02562 * 19 18 16 41 41 H 1.09007 * 110.36643 * 274.74866 * 24 9 7 42 42 H 1.09001 * 110.36791 * 37.06889 * 24 9 7 43 43 H 1.07997 * 125.63359 * 180.02562 * 25 6 5 44 44 H 1.07999 * 120.42183 * 359.95506 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2081 0.0000 4 7 3.5286 1.2032 -0.0052 5 6 4.2084 0.0556 -0.0008 6 6 5.5864 -0.2334 -0.0013 7 6 6.6822 0.7402 -0.0014 8 8 6.4371 1.9323 -0.0005 9 7 7.9613 0.3152 -0.0014 10 6 8.3976 -1.0888 -0.0019 11 6 9.9406 -1.0890 0.0246 12 6 10.2783 0.3078 0.6096 13 1 10.2195 0.3002 1.6980 14 7 11.5976 0.7601 0.1609 15 6 11.8670 0.9278 -1.2693 16 6 12.5788 1.0261 1.0783 17 1 12.3161 1.4015 2.0563 18 6 13.9109 0.8133 0.7513 19 7 14.8551 1.5026 1.3560 20 14 14.3633 -0.4514 -0.5469 21 1 14.5145 0.2215 -1.8620 22 1 15.6438 -1.1056 -0.1755 23 1 13.2916 -1.4754 -0.6351 24 6 9.1544 1.1811 -0.0073 25 6 5.7109 -1.6343 -0.0018 26 7 4.5152 -2.1619 -0.0010 27 7 3.5552 -1.1441 -0.0009 28 6 2.1923 -1.1718 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5143 32 1 1.6780 2.1459 0.0008 33 1 8.0116 -1.5973 0.8817 34 1 8.0399 -1.5879 -0.9025 35 1 10.3151 -1.8801 0.6744 36 1 10.3436 -1.1960 -0.9825 37 1 11.7119 1.9699 -1.5486 38 1 12.8984 0.6447 -1.4804 39 1 11.1915 0.2933 -1.8432 40 1 15.7861 1.3541 1.1271 41 1 9.4101 1.4675 -1.0275 42 1 8.9834 2.0667 0.6047 43 1 6.6409 -2.1833 -0.0018 44 1 1.6645 -2.1140 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972451824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:11 Heat of formation + Delta-G solvation = 136.826654 kcal Electronic energy + Delta-G solvation = -27642.393633 eV Core-core repulsion = 23791.933429 eV Total energy + Delta-G solvation = -3850.460204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.79952 -39.75044 -38.54215 -37.31424 -34.97090 -34.70747 -33.09433 -31.77783 -30.41568 -29.80544 -28.58496 -27.14027 -26.20823 -25.30230 -24.34642 -22.94368 -22.71776 -21.62757 -19.81099 -19.40786 -18.48093 -17.45114 -17.13787 -16.95353 -16.59718 -16.04550 -15.53276 -15.05912 -14.99341 -14.47042 -14.24211 -14.17412 -13.87958 -13.52940 -13.32085 -13.22117 -12.94968 -12.90511 -12.73938 -12.56188 -12.43531 -12.25942 -11.90681 -11.76034 -11.38850 -11.33699 -10.91365 -10.78149 -10.52809 -10.16343 -10.14069 -9.95113 -9.82435 -9.60685 -9.50867 -8.54738 -8.40895 -8.15309 -6.96296 -6.01638 -3.36535 0.02259 0.36951 1.56790 1.91142 2.82218 3.14560 3.30931 3.45375 3.46449 3.50478 3.61378 3.72961 3.87562 4.16786 4.35125 4.51050 4.71617 4.76376 4.81235 4.88785 4.94105 4.98063 5.13553 5.17217 5.22474 5.30108 5.32459 5.48083 5.55898 5.70718 5.75046 5.84480 5.91469 6.03409 6.13305 6.27057 6.32762 6.45797 6.54984 6.67340 6.73828 6.82144 6.96331 7.25820 7.82593 7.96905 8.32377 8.52814 8.92814 9.68509 10.04896 11.13847 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.034861 B = 0.002478 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.995313 B =11297.413141 C =11775.529646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.189 4.189 3 C 0.185 3.815 4 N -0.435 5.435 5 C 0.312 3.688 6 C -0.275 4.275 7 C 0.607 3.393 8 O -0.532 6.532 9 N -0.612 5.612 10 C 0.094 3.906 11 C -0.158 4.158 12 C 0.173 3.827 13 H 0.089 0.911 14 N -0.596 5.596 15 C 0.108 3.892 16 C -0.272 4.272 17 H 0.083 0.917 18 C 0.033 3.967 19 N -0.894 5.894 20 Si 0.882 3.118 21 H -0.287 1.287 22 H -0.304 1.304 23 H -0.271 1.271 24 C 0.094 3.906 25 C 0.114 3.886 26 N -0.313 5.313 27 N -0.305 5.305 28 C 0.158 3.842 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.184 0.816 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.022 0.978 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.216 0.784 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.683 -8.338 -4.131 31.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.195 4.195 3 C 0.002 3.998 4 N -0.144 5.144 5 C 0.080 3.920 6 C -0.291 4.291 7 C 0.396 3.604 8 O -0.410 6.410 9 N -0.347 5.347 10 C -0.029 4.029 11 C -0.198 4.198 12 C 0.063 3.937 13 H 0.107 0.893 14 N -0.317 5.317 15 C -0.036 4.036 16 C -0.400 4.400 17 H 0.101 0.899 18 C -0.168 4.168 19 N -0.535 5.535 20 Si 0.714 3.286 21 H -0.215 1.215 22 H -0.232 1.232 23 H -0.196 1.196 24 C -0.030 4.030 25 C -0.066 4.066 26 N -0.135 5.135 27 N -0.073 5.073 28 C 0.022 3.978 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.201 0.799 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.232 0.768 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -29.539 -8.091 -4.100 30.900 hybrid contribution 0.391 -0.943 -0.811 1.304 sum -29.147 -9.035 -4.910 30.908 Atomic orbital electron populations 1.20622 0.87380 1.04088 1.03431 1.20619 0.99204 0.92348 1.07360 1.23629 0.88979 0.98608 0.88584 1.68355 1.08437 1.23967 1.13660 1.20361 0.93123 0.81171 0.97344 1.19438 0.90100 0.93617 1.25994 1.16346 0.80238 0.86966 0.76838 1.90836 1.83178 1.16180 1.50770 1.48153 1.04957 1.08020 1.73563 1.22336 0.96866 0.83344 1.00374 1.23318 0.91849 1.01689 1.02961 1.21613 0.84754 0.89290 0.98022 0.89332 1.43986 1.08967 1.76771 1.01997 1.21348 0.98834 0.98394 0.85032 1.18803 0.85069 1.38578 0.97510 0.89901 1.25316 0.95649 0.97993 0.97795 1.69921 1.00371 1.38571 1.44666 0.86903 0.76926 0.83754 0.81050 1.21542 1.23228 1.19612 1.22882 0.83811 0.94632 1.01665 1.24953 0.96894 0.92812 0.91954 1.77628 0.96343 1.08291 1.31234 1.47059 1.06113 1.08010 1.46086 1.21954 0.79380 1.01264 0.95172 0.90189 0.90060 0.90728 0.79940 0.91395 0.91783 0.90088 0.90723 0.95956 0.94253 0.94504 0.92661 0.91529 0.90434 0.76801 0.80115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.15 10.03 36.00 0.36 0.21 16 2 C -0.19 -1.05 5.86 -104.87 -0.61 -1.67 16 3 C 0.19 1.48 10.97 -17.05 -0.19 1.29 16 4 N -0.43 -5.90 10.26 -12.00 -0.12 -6.02 16 5 C 0.31 4.49 7.74 -155.83 -1.21 3.28 16 6 C -0.28 -4.20 6.13 -104.65 -0.64 -4.84 16 7 C 0.61 10.87 7.82 -12.89 -0.10 10.77 16 8 O -0.53 -11.46 16.99 5.18 0.09 -11.37 16 9 N -0.61 -10.02 3.32 -171.95 -0.57 -10.59 16 10 C 0.09 1.21 4.98 -3.06 -0.02 1.20 16 11 C -0.16 -2.44 6.49 -24.89 -0.16 -2.60 16 12 C 0.17 3.29 3.55 -65.66 -0.23 3.06 16 13 H 0.09 1.73 7.96 -51.93 -0.41 1.32 16 14 N -0.60 -13.79 2.61 -170.89 -0.45 -14.24 16 15 C 0.11 2.33 8.32 59.85 0.50 2.83 16 16 C -0.27 -7.46 9.89 -15.06 -0.15 -7.61 16 17 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 18 C 0.03 0.94 5.29 -17.43 -0.09 0.85 16 19 N -0.89 -27.09 13.97 55.49 0.78 -26.31 16 20 Si 0.88 21.90 25.07 -169.99 -4.26 17.64 16 21 H -0.29 -6.98 6.62 56.52 0.37 -6.60 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.09 1.72 6.46 -2.41 -0.02 1.70 16 25 C 0.11 1.39 10.40 -17.13 -0.18 1.22 16 26 N -0.31 -3.85 12.58 30.76 0.39 -3.46 16 27 N -0.30 -3.55 3.86 -11.97 -0.05 -3.60 16 28 C 0.16 1.14 10.94 -16.45 -0.18 0.96 16 29 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.08 0.05 8.10 -51.93 -0.42 -0.37 16 31 H 0.07 0.04 8.09 -51.92 -0.42 -0.38 16 32 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.07 0.74 6.83 -51.92 -0.35 0.38 16 34 H 0.06 0.69 6.98 -51.93 -0.36 0.33 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.19 6.48 -51.93 -0.34 0.85 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.04 0.92 2.56 -51.93 -0.13 0.79 16 39 H 0.04 0.68 6.36 -51.93 -0.33 0.35 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.07 1.24 6.95 -51.92 -0.36 0.88 16 42 H 0.08 1.53 8.03 -51.93 -0.42 1.12 16 43 H 0.22 2.00 4.41 -52.49 -0.23 1.76 16 44 H 0.18 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -37.38 354.04 -7.26 -44.64 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.48 Total: -2.66 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -2.92 Total: 10.65 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.03 Total: -64.23 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.26 Total: 17.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.38 -7.26 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972451824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.466 kcal (2) G-P(sol) polarization free energy of solvation -37.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds