Wall clock time and date at job start Tue Mar 31 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30894 * 119.96638 * 2 1 4 4 C 1.34159 * 121.16945 * 179.97438 * 3 2 1 5 5 C 1.38709 * 132.24731 * 179.97438 * 4 3 2 6 6 C 1.38843 * 107.67168 * 179.97438 * 5 4 3 7 7 N 1.31286 * 108.99159 * 0.02562 * 6 5 4 8 8 N 1.37268 * 120.90239 * 359.97438 * 4 3 2 9 9 C 1.36076 * 119.96977 * 359.72308 * 8 4 3 10 10 C 1.38057 * 118.89212 * 0.54778 * 9 8 4 11 11 C 1.47603 * 120.50626 * 179.72965 * 10 9 8 12 12 O 1.21584 * 120.00367 * 133.85336 * 11 10 9 13 13 N 1.34784 * 119.99830 * 313.85361 * 11 10 9 14 14 C 1.47486 * 125.59054 * 354.78927 * 13 11 10 15 15 C 1.54320 * 107.03563 * 181.00192 * 14 13 11 16 16 C 1.55154 * 103.09903 * 22.24551 * 15 14 13 17 17 H 1.09002 * 111.00768 * 82.51991 * 16 15 14 18 18 N 1.46502 * 111.00178 * 206.33335 * 16 15 14 19 19 C 1.46505 * 119.99987 * 59.99768 * 18 16 15 20 20 C 1.36935 * 120.00038 * 239.99741 * 18 16 15 21 21 H 1.08006 * 120.00059 * 20.92657 * 20 18 16 22 22 C 1.38812 * 120.00080 * 200.92564 * 20 18 16 23 23 N 1.31613 * 120.00099 * 17.87370 * 22 20 18 24 24 Si 1.86804 * 120.00080 * 197.87408 * 22 20 18 25 25 H 1.48499 * 109.47085 * 90.00002 * 24 22 20 26 26 H 1.48503 * 109.47287 * 210.00204 * 24 22 20 27 27 H 1.48501 * 109.47050 * 329.99789 * 24 22 20 28 28 C 1.47418 * 125.65242 * 174.76479 * 13 11 10 29 29 H 1.09002 * 109.47284 * 264.70467 * 1 2 3 30 30 H 1.09006 * 109.47009 * 24.70288 * 1 2 3 31 31 H 1.08996 * 109.47285 * 144.70188 * 1 2 3 32 32 H 1.07996 * 126.16455 * 359.97438 * 5 4 3 33 33 H 1.08000 * 125.50295 * 179.97438 * 6 5 4 34 34 H 1.08004 * 120.55250 * 180.29651 * 9 8 4 35 35 H 1.09007 * 110.03408 * 61.64529 * 14 13 11 36 36 H 1.08998 * 109.96787 * 300.33444 * 14 13 11 37 37 H 1.08996 * 110.72138 * 263.78943 * 15 14 13 38 38 H 1.09000 * 110.71842 * 140.69346 * 15 14 13 39 39 H 1.08999 * 109.46830 * 94.22938 * 19 18 16 40 40 H 1.09003 * 109.47131 * 214.22101 * 19 18 16 41 41 H 1.08993 * 109.47108 * 334.22948 * 19 18 16 42 42 H 0.97007 * 120.00305 * 179.97438 * 23 22 20 43 43 H 1.09001 * 110.36180 * 37.07348 * 28 13 11 44 44 H 1.08999 * 110.36632 * 274.75922 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5021 1.1621 0.0005 5 6 4.4129 2.2083 0.0002 6 6 5.6874 1.6575 0.0016 7 7 5.5871 0.3485 0.0023 8 7 4.2316 -0.0006 0.0016 9 6 3.5943 -1.2029 0.0078 10 6 2.2140 -1.2263 0.0015 11 6 1.4863 -2.5105 0.0019 12 8 0.5484 -2.6776 0.7573 13 7 1.8616 -3.4980 -0.8351 14 6 2.9046 -3.3937 -1.8727 15 6 2.9651 -4.7578 -2.5917 16 6 1.5694 -5.3704 -2.3017 17 1 0.8231 -4.9900 -2.9993 18 7 1.6205 -6.8340 -2.3382 19 6 2.4972 -7.5597 -1.4157 20 6 0.8488 -7.5239 -3.2347 21 1 0.4725 -7.0280 -4.1173 22 6 0.5501 -8.8606 -3.0092 23 7 0.6920 -9.3725 -1.8050 24 14 -0.0531 -9.9330 -4.4148 25 1 1.1093 -10.5636 -5.0904 26 1 -0.9493 -10.9902 -3.8815 27 1 -0.7990 -9.0975 -5.3900 28 6 1.2983 -4.8600 -0.8645 29 1 -0.3634 -0.0948 1.0233 30 1 -0.3633 0.9337 -0.4295 31 1 -0.3633 -0.8387 -0.5938 32 1 4.1738 3.2614 -0.0010 33 1 6.6119 2.2157 0.0014 34 1 4.1590 -2.1236 0.0135 35 1 3.8682 -3.1740 -1.4129 36 1 2.6443 -2.6105 -2.5847 37 1 3.7546 -5.3807 -2.1713 38 1 3.1118 -4.6228 -3.6633 39 1 1.9323 -7.8490 -0.5295 40 1 2.8834 -8.4523 -1.9077 41 1 3.3280 -6.9176 -1.1233 42 1 0.4830 -10.3066 -1.6473 43 1 0.2266 -4.8315 -0.6678 44 1 1.8018 -5.4946 -0.1352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972643057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:50 Heat of formation + Delta-G solvation = 123.923797 kcal Electronic energy + Delta-G solvation = -27960.811638 eV Core-core repulsion = 24109.791924 eV Total energy + Delta-G solvation = -3851.019714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.65169 -40.20806 -38.42035 -37.37632 -35.08732 -34.46746 -32.44088 -31.74396 -30.23397 -29.73276 -28.37172 -27.87944 -26.15862 -25.23204 -23.64201 -22.80743 -22.45867 -21.74845 -19.90215 -19.44972 -18.94587 -17.58127 -17.10382 -16.66110 -16.31963 -15.96429 -15.71699 -15.40673 -14.77821 -14.46264 -14.28261 -13.94582 -13.78382 -13.44455 -13.39250 -13.18597 -12.83912 -12.65495 -12.55101 -12.39909 -12.08554 -12.01291 -11.66587 -11.62320 -11.52024 -11.02474 -10.87927 -10.62881 -10.59535 -10.43116 -10.35408 -10.01655 -9.93033 -9.89780 -9.70132 -8.69057 -8.54717 -8.24318 -6.93229 -5.85745 -3.30210 0.08136 0.36154 1.60706 2.17826 2.57458 2.84288 3.14376 3.32734 3.39809 3.40960 3.43582 3.72525 3.83869 4.24524 4.39618 4.62335 4.76574 4.81817 4.85998 5.05476 5.10887 5.18136 5.35160 5.36721 5.40878 5.42412 5.47727 5.58703 5.62107 5.75597 5.86047 5.87187 6.02793 6.13692 6.15954 6.21450 6.31570 6.48249 6.64290 6.73922 7.04184 7.21682 7.30461 7.47906 7.57539 7.70856 8.00680 8.24995 9.08859 9.72089 10.19534 11.19357 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023878 B = 0.002685 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.324128 B =10426.262569 C =10997.718913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.253 3.747 3 N -0.471 5.471 4 C 0.267 3.733 5 C -0.268 4.268 6 C 0.097 3.903 7 N -0.312 5.312 8 N -0.317 5.317 9 C 0.206 3.794 10 C -0.222 4.222 11 C 0.587 3.413 12 O -0.521 6.521 13 N -0.606 5.606 14 C 0.098 3.902 15 C -0.153 4.153 16 C 0.174 3.826 17 H 0.080 0.920 18 N -0.583 5.583 19 C 0.157 3.843 20 C -0.265 4.265 21 H 0.072 0.928 22 C 0.006 3.994 23 N -0.900 5.900 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.087 3.913 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.164 0.836 33 H 0.201 0.799 34 H 0.187 0.813 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.003 0.997 42 H 0.255 0.745 43 H 0.079 0.921 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.398 20.006 2.445 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.088 3.912 3 N -0.184 5.184 4 C 0.041 3.959 5 C -0.299 4.299 6 C -0.082 4.082 7 N -0.135 5.135 8 N -0.087 5.087 9 C 0.069 3.931 10 C -0.233 4.233 11 C 0.373 3.627 12 O -0.397 6.397 13 N -0.340 5.340 14 C -0.025 4.025 15 C -0.194 4.194 16 C 0.063 3.937 17 H 0.098 0.902 18 N -0.303 5.303 19 C 0.013 3.987 20 C -0.394 4.394 21 H 0.090 0.910 22 C -0.193 4.193 23 N -0.544 5.544 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.036 4.036 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.181 0.819 33 H 0.217 0.783 34 H 0.204 0.796 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.022 0.978 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.332 19.601 2.948 21.134 hybrid contribution -0.059 -0.652 -0.596 0.885 sum 7.273 18.949 2.353 20.433 Atomic orbital electron populations 1.20895 0.86024 1.04329 1.05047 1.21912 0.98018 0.85571 0.85689 1.68070 1.03811 1.27941 1.18560 1.20858 0.88206 0.87074 0.99742 1.21006 0.89561 0.98776 1.20566 1.23944 0.99055 0.90956 0.94250 1.77941 0.88910 1.15580 1.31103 1.47106 1.07805 1.05996 1.47819 1.22539 0.91773 0.88722 0.90097 1.20664 0.91926 0.97075 1.13610 1.17010 0.83508 0.81481 0.80749 1.90839 1.28069 1.80586 1.40229 1.48608 1.38486 1.12886 1.33996 1.22299 0.90175 1.00128 0.89942 1.23241 1.02094 0.93693 1.00343 1.21445 0.93743 0.85760 0.92758 0.90159 1.43889 1.46886 0.98341 1.41154 1.20818 0.90366 0.93670 0.93894 1.19211 1.27419 0.93270 0.99491 0.91040 1.24990 0.99576 0.98523 0.96222 1.70095 1.51900 1.13693 1.18693 0.86243 0.78181 0.80341 0.81690 1.21404 1.21731 1.20388 1.23210 0.99686 0.79311 1.01419 0.88197 0.89604 0.89266 0.81859 0.78265 0.79619 0.92339 0.91532 0.90308 0.90324 0.94982 0.93680 0.97843 0.93522 0.90252 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.02 36.00 0.32 -0.76 16 2 C 0.25 3.08 6.86 -81.73 -0.56 2.52 16 3 N -0.47 -6.04 10.37 -8.17 -0.08 -6.12 16 4 C 0.27 3.37 7.91 -155.32 -1.23 2.14 16 5 C -0.27 -2.72 10.91 -39.18 -0.43 -3.14 16 6 C 0.10 0.87 11.95 -17.56 -0.21 0.66 16 7 N -0.31 -3.69 12.65 30.49 0.39 -3.30 16 8 N -0.32 -3.94 3.88 -11.68 -0.05 -3.98 16 9 C 0.21 2.36 9.74 -15.74 -0.15 2.20 16 10 C -0.22 -2.76 5.36 -104.88 -0.56 -3.32 16 11 C 0.59 8.47 6.62 -12.44 -0.08 8.39 16 12 O -0.52 -9.00 15.88 5.29 0.08 -8.91 16 13 N -0.61 -8.64 3.34 -171.35 -0.57 -9.22 16 14 C 0.10 1.16 5.98 -2.81 -0.02 1.15 16 15 C -0.15 -2.19 6.49 -24.90 -0.16 -2.35 16 16 C 0.17 3.16 3.54 -65.79 -0.23 2.92 16 17 H 0.08 1.48 7.95 -51.93 -0.41 1.07 16 18 N -0.58 -13.32 2.96 -171.03 -0.51 -13.83 16 19 C 0.16 3.54 7.58 59.85 0.45 3.99 16 20 C -0.26 -6.81 9.60 -15.06 -0.14 -6.95 16 21 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 22 C 0.01 0.17 4.99 -17.43 -0.09 0.08 16 23 N -0.90 -25.13 10.88 55.49 0.60 -24.53 16 24 Si 0.91 20.96 29.59 -169.99 -5.03 15.93 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.09 1.51 6.49 -2.54 -0.02 1.49 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.96 7.05 -51.93 -0.37 0.59 16 32 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.19 1.77 6.33 -52.48 -0.33 1.44 16 35 H 0.06 0.58 5.87 -51.93 -0.30 0.28 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.17 6.45 -51.93 -0.33 0.83 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.80 7.43 -51.93 -0.39 0.41 16 40 H 0.04 1.11 7.27 -51.93 -0.38 0.73 16 41 H 0.00 0.06 6.39 -51.93 -0.33 -0.27 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.08 1.50 7.99 -51.93 -0.41 1.08 16 44 H 0.07 1.34 6.98 -51.93 -0.36 0.98 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -31.30 358.48 -8.58 -39.88 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.71 Total: -0.34 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -3.11 Total: 9.03 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.22 Total: -60.99 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.30 -8.58 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972643057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.801 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds