Wall clock time and date at job start Tue Mar 31 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39971 * 119.94309 * 2 1 4 4 C 1.35752 * 119.35254 * 180.02562 * 3 2 1 5 5 N 1.36321 * 119.15828 * 359.97438 * 4 3 2 6 6 N 1.39899 * 132.15780 * 179.97438 * 5 4 3 7 7 C 1.30697 * 109.51637 * 180.02562 * 6 5 4 8 8 C 1.40649 * 108.73041 * 0.02562 * 7 6 5 9 9 C 1.46575 * 126.54220 * 180.02562 * 8 7 6 10 10 O 1.21713 * 119.99972 * 186.09837 * 9 8 7 11 11 N 1.34781 * 120.00240 * 6.09553 * 9 8 7 12 12 C 1.47423 * 125.65281 * 174.85964 * 11 9 8 13 13 C 1.54905 * 104.83316 * 155.90795 * 12 11 9 14 14 C 1.55154 * 101.61823 * 36.99267 * 13 12 11 15 15 H 1.09003 * 110.72217 * 82.87945 * 14 13 12 16 16 N 1.46496 * 110.72136 * 206.15280 * 14 13 12 17 17 C 1.46501 * 120.00164 * 59.99974 * 16 14 13 18 18 C 1.36937 * 120.00426 * 239.99606 * 16 14 13 19 19 H 1.08003 * 119.99474 * 24.74778 * 18 16 14 20 20 C 1.38805 * 120.00685 * 204.74737 * 18 16 14 21 21 N 1.31620 * 119.99604 * 6.43198 * 20 18 16 22 22 Si 1.86803 * 120.00239 * 186.42826 * 20 18 16 23 23 H 1.48496 * 109.46996 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46881 * 120.00428 * 22 20 18 25 25 H 1.48500 * 109.47318 * 240.00122 * 22 20 18 26 26 C 1.47025 * 125.64362 * 354.90503 * 11 9 8 27 27 C 1.36599 * 119.72899 * 0.30421 * 5 4 3 28 28 N 1.31502 * 119.95045 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47148 * 89.99811 * 1 2 3 30 30 H 1.08998 * 109.46672 * 209.99633 * 1 2 3 31 31 H 1.08992 * 109.47325 * 329.99418 * 1 2 3 32 32 H 1.07998 * 120.32397 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.41962 * 179.97438 * 4 3 2 34 34 H 1.08005 * 125.63616 * 180.02562 * 7 6 5 35 35 H 1.08999 * 110.36203 * 37.06840 * 12 11 9 36 36 H 1.09004 * 110.45979 * 274.79568 * 12 11 9 37 37 H 1.09005 * 111.00153 * 155.08593 * 13 12 11 38 38 H 1.08997 * 111.00456 * 278.89813 * 13 12 11 39 39 H 1.09001 * 109.47211 * 95.16031 * 17 16 14 40 40 H 1.08994 * 109.47223 * 215.16140 * 17 16 14 41 41 H 1.09008 * 109.47021 * 335.16422 * 17 16 14 42 42 H 0.97005 * 119.99556 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.88028 * 300.43437 * 26 11 9 44 44 H 1.08998 * 109.88549 * 61.60522 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.2129 0.0000 4 6 3.5631 1.1989 -0.0005 5 7 4.2150 0.0016 -0.0005 6 7 5.5748 -0.3271 -0.0014 7 6 5.7097 -1.6271 -0.0015 8 6 4.4315 -2.2138 -0.0013 9 6 4.1296 -3.6482 -0.0007 10 8 2.9786 -4.0278 -0.1125 11 7 5.1265 -4.5467 0.1235 12 6 4.9577 -6.0060 0.2464 13 6 6.2957 -6.6037 -0.2555 14 6 7.3210 -5.5723 0.2851 15 1 7.5652 -5.7808 1.3268 16 7 8.5311 -5.5627 -0.5405 17 6 8.4435 -5.2317 -1.9649 18 6 9.7443 -5.8631 0.0192 19 1 9.7922 -6.4740 0.9085 20 6 10.9123 -5.3826 -0.5565 21 7 10.8503 -4.5366 -1.5628 22 14 12.5723 -5.9367 0.0970 23 1 12.3700 -6.8834 1.2231 24 1 13.3306 -6.6119 -0.9866 25 1 13.3359 -4.7557 0.5737 26 6 6.5626 -4.2335 0.1598 27 6 3.4971 -1.1605 -0.0063 28 7 2.1635 -1.1394 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6700 2.1507 -0.0004 33 1 4.1195 2.1246 -0.0010 34 1 6.6478 -2.1624 -0.0018 35 1 4.1320 -6.3463 -0.3786 36 1 4.7846 -6.2833 1.2863 37 1 6.4692 -7.5898 0.1756 38 1 6.3209 -6.6457 -1.3443 39 1 8.6561 -4.1719 -2.1054 40 1 9.1694 -5.8247 -2.5211 41 1 7.4396 -5.4521 -2.3281 42 1 11.6666 -4.2005 -1.9649 43 1 6.8549 -3.7273 -0.7602 44 1 6.7824 -3.6006 1.0195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972747440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:56 Heat of formation + Delta-G solvation = 105.446998 kcal Electronic energy + Delta-G solvation = -28045.518307 eV Core-core repulsion = 24193.697379 eV Total energy + Delta-G solvation = -3851.820928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.59299 -40.96586 -39.37324 -38.72257 -36.42336 -35.30281 -33.45887 -33.20681 -31.95192 -30.31976 -29.36554 -29.26637 -28.02584 -25.75777 -25.23889 -24.17817 -23.56891 -22.70829 -20.97461 -20.78185 -19.26484 -18.90126 -18.53380 -17.57130 -17.40487 -17.12268 -16.89250 -16.41439 -15.87647 -15.57215 -15.24439 -15.21454 -14.84738 -14.70655 -14.66883 -14.38642 -14.08415 -13.76362 -13.57763 -13.21501 -13.12299 -13.06011 -12.84065 -12.74177 -12.68813 -12.46693 -12.34900 -12.34183 -12.16082 -12.00321 -11.76812 -11.44390 -10.95138 -10.86889 -10.60580 -10.59005 -9.67647 -9.14023 -8.74441 -7.78814 -5.30641 -0.66726 -0.29079 0.87078 0.92603 1.50162 1.52331 1.61637 1.98692 2.00863 2.47798 2.53629 2.65025 2.92763 3.33837 3.34443 3.53145 3.71337 3.80724 3.89847 3.94340 3.97205 4.17477 4.31638 4.33368 4.34697 4.42103 4.50268 4.70943 4.72020 4.77103 4.84067 4.84803 4.87151 5.02036 5.04004 5.19143 5.26351 5.29553 5.36010 5.40046 5.49847 5.70292 5.76726 6.12628 6.36179 6.51555 6.59018 7.18160 7.22850 7.87307 8.33165 9.23662 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.003030 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.953498 B = 9238.891763 C =10342.921688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.206 3.794 3 C -0.194 4.194 4 C 0.152 3.848 5 N -0.314 5.314 6 N -0.328 5.328 7 C 0.125 3.875 8 C -0.328 4.328 9 C 0.608 3.392 10 O -0.579 6.579 11 N -0.612 5.612 12 C 0.115 3.885 13 C -0.139 4.139 14 C 0.167 3.833 15 H 0.088 0.912 16 N -0.600 5.600 17 C 0.180 3.820 18 C -0.260 4.260 19 H 0.077 0.923 20 C -0.049 4.049 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.296 1.296 25 H -0.294 1.294 26 C 0.086 3.914 27 C 0.315 3.685 28 N -0.499 5.499 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.230 0.770 33 H 0.224 0.776 34 H 0.215 0.785 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.008 0.992 40 H 0.018 0.982 41 H 0.021 0.979 42 H 0.247 0.753 43 H 0.061 0.939 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.731 13.703 4.375 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.047 3.953 3 C -0.216 4.216 4 C 0.019 3.981 5 N -0.083 5.083 6 N -0.150 5.150 7 C -0.056 4.056 8 C -0.345 4.345 9 C 0.400 3.600 10 O -0.461 6.461 11 N -0.345 5.345 12 C -0.007 4.007 13 C -0.179 4.179 14 C 0.059 3.941 15 H 0.106 0.894 16 N -0.321 5.321 17 C 0.035 3.965 18 C -0.390 4.390 19 H 0.095 0.905 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.797 3.203 23 H -0.189 1.189 24 H -0.223 1.223 25 H -0.221 1.221 26 C -0.039 4.039 27 C 0.081 3.919 28 N -0.214 5.214 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.147 0.853 32 H 0.247 0.753 33 H 0.241 0.759 34 H 0.231 0.769 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.026 0.974 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.790 13.802 4.227 24.495 hybrid contribution 1.533 -0.385 -0.121 1.586 sum -18.257 13.417 4.106 23.026 Atomic orbital electron populations 1.21062 0.83920 1.05931 1.05460 1.23050 1.00114 0.87383 0.84783 1.22424 0.91551 1.02368 1.05272 1.23185 0.93927 0.88293 0.92726 1.47335 1.07214 1.07395 1.46337 1.77559 0.89576 1.15742 1.32120 1.24942 0.98927 0.90758 0.91018 1.19333 0.91655 0.92796 1.30671 1.16623 0.83526 0.84128 0.75749 1.90741 1.20854 1.81094 1.53375 1.48214 1.06259 1.07714 1.72356 1.22228 0.98301 0.78501 1.01644 1.23237 0.93259 1.00100 1.01262 1.21535 0.85666 0.91329 0.95600 0.89418 1.44024 1.02855 1.80463 1.04782 1.20486 0.94760 0.97551 0.83682 1.19602 0.83944 1.24825 1.10652 0.90509 1.25836 1.01425 0.97933 0.99205 1.70228 1.26856 1.34403 1.26829 0.85187 0.80163 0.77257 0.77721 1.18869 1.22274 1.22119 1.22933 0.79249 1.00791 1.00956 1.20353 0.88590 0.86791 0.96198 1.68228 1.03229 1.31243 1.18705 0.87532 0.90921 0.85308 0.75342 0.75949 0.76922 0.91131 0.90063 0.88524 0.91849 0.97412 0.96321 0.96087 0.94365 0.92100 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.19 71.24 0.73 -0.14 16 2 C 0.21 3.47 6.83 43.03 0.29 3.76 16 3 C -0.19 -1.74 9.72 22.11 0.22 -1.52 16 4 C 0.15 2.21 11.29 83.42 0.94 3.15 16 5 N -0.31 -8.61 3.86 -191.79 -0.74 -9.35 16 6 N -0.33 -10.55 12.58 -56.57 -0.71 -11.26 16 7 C 0.12 4.27 10.41 85.45 0.89 5.16 16 8 C -0.33 -12.22 6.13 -19.89 -0.12 -12.34 16 9 C 0.61 24.46 7.81 86.42 0.67 25.13 16 10 O -0.58 -26.28 16.99 -4.39 -0.07 -26.35 16 11 N -0.61 -22.17 3.33 -816.48 -2.72 -24.89 16 12 C 0.12 3.67 6.93 86.85 0.60 4.27 16 13 C -0.14 -4.53 6.61 31.98 0.21 -4.32 16 14 C 0.17 6.36 3.43 46.20 0.16 6.52 16 15 H 0.09 3.22 7.95 -2.39 -0.02 3.20 16 16 N -0.60 -28.41 2.94 -696.06 -2.04 -30.45 16 17 C 0.18 8.75 7.48 127.77 0.96 9.71 16 18 C -0.26 -13.52 9.61 84.03 0.81 -12.71 16 19 H 0.08 3.83 7.84 -2.91 -0.02 3.80 16 20 C -0.05 -2.63 5.22 84.86 0.44 -2.19 16 21 N -0.94 -53.81 10.48 21.65 0.23 -53.59 16 22 Si 0.97 43.88 29.56 68.60 2.03 45.90 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 C 0.09 3.10 4.61 86.75 0.40 3.50 16 27 C 0.32 10.54 7.74 133.98 1.04 11.57 16 28 N -0.50 -14.95 10.20 -180.00 -1.84 -16.79 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.13 -0.04 8.09 -2.39 -0.02 -0.06 16 32 H 0.23 -0.74 8.06 -2.91 -0.02 -0.77 16 33 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.21 7.17 4.45 -2.91 -0.01 7.16 16 35 H 0.07 2.28 7.99 -2.39 -0.02 2.26 16 36 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 38 H 0.06 2.24 6.45 -2.39 -0.02 2.22 16 39 H 0.01 0.40 7.25 -2.39 -0.02 0.39 16 40 H 0.02 0.97 7.28 -2.39 -0.02 0.96 16 41 H 0.02 0.91 6.47 -2.38 -0.02 0.89 16 42 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 43 H 0.06 2.41 5.65 -2.39 -0.01 2.39 16 44 H 0.07 2.49 6.89 -2.39 -0.02 2.47 16 Total: -1.00 -80.98 358.58 3.40 -77.58 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.04 Total: 9.64 kcal Atomic # 6 Polarization: 31.31 SS G_CDS: 8.24 Total: 39.55 kcal Atomic # 7 Polarization: -138.50 SS G_CDS: -7.82 Total: -146.32 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.07 Total: -26.35 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -80.98 3.40 -77.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972747440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.026 kcal (2) G-P(sol) polarization free energy of solvation -80.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds