Wall clock time and date at job start Tue Mar 31 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47009 * 235.53984 * 3 2 1 5 5 C 1.35425 * 117.00126 * 180.02562 * 4 3 2 6 6 N 1.32237 * 119.80162 * 0.02677 * 5 4 3 7 7 C 1.31879 * 121.80448 * 179.97438 * 6 5 4 8 8 C 1.38354 * 121.18328 * 359.97438 * 7 6 5 9 9 C 1.38335 * 119.45897 * 359.74054 * 8 7 6 10 10 C 1.39989 * 118.34990 * 0.52124 * 9 8 7 11 11 C 1.47523 * 120.59752 * 179.75664 * 10 9 8 12 12 O 1.21591 * 119.99796 * 137.14774 * 11 10 9 13 13 N 1.34777 * 120.00019 * 316.86708 * 11 10 9 14 14 C 1.47015 * 125.64905 * 354.93883 * 13 11 10 15 15 C 1.54323 * 107.27473 * 181.02112 * 14 13 11 16 16 C 1.55157 * 102.93936 * 22.19250 * 15 14 13 17 17 H 1.08997 * 111.00902 * 82.61078 * 16 15 14 18 18 N 1.46502 * 111.00443 * 206.42795 * 16 15 14 19 19 C 1.46501 * 120.00146 * 59.99651 * 18 16 15 20 20 C 1.36941 * 119.99590 * 240.00143 * 18 16 15 21 21 H 1.07997 * 120.00461 * 24.21627 * 20 18 16 22 22 C 1.38811 * 119.99690 * 204.21754 * 20 18 16 23 23 N 1.31625 * 120.00119 * 9.23352 * 22 20 18 24 24 Si 1.86799 * 120.00164 * 189.23795 * 22 20 18 25 25 H 1.48494 * 109.47398 * 89.99757 * 24 22 20 26 26 H 1.48502 * 109.47116 * 210.00008 * 24 22 20 27 27 H 1.48507 * 109.46742 * 329.99552 * 24 22 20 28 28 C 1.47418 * 125.64673 * 174.62792 * 13 11 10 29 29 H 4.38445 * 5.44342 * 180.02562 * 4 1 2 30 30 H 1.09007 * 109.46796 * 115.55025 * 3 2 1 31 31 H 1.08995 * 109.47514 * 355.54590 * 3 2 1 32 32 H 1.07997 * 119.40795 * 179.97438 * 7 6 5 33 33 H 1.07997 * 120.27123 * 180.02562 * 8 7 6 34 34 H 1.07997 * 120.82553 * 180.27833 * 9 8 7 35 35 H 1.09005 * 109.88244 * 300.43606 * 14 13 11 36 36 H 1.08999 * 109.88532 * 61.44361 * 14 13 11 37 37 H 1.08996 * 110.72038 * 140.55062 * 15 14 13 38 38 H 1.09001 * 110.71797 * 263.65281 * 15 14 13 39 39 H 1.09005 * 109.46770 * 95.27428 * 19 18 16 40 40 H 1.08996 * 109.46883 * 215.26960 * 19 18 16 41 41 H 1.08998 * 109.47001 * 335.27514 * 19 18 16 42 42 H 0.97002 * 119.99960 * 180.02562 * 23 22 20 43 43 H 1.09007 * 110.36744 * 274.74903 * 28 13 11 44 44 H 1.09001 * 110.37230 * 37.07233 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1220 0.7632 1.1108 5 6 4.4645 0.8647 1.2569 6 7 5.2667 0.2709 0.3894 7 6 6.5793 0.3443 0.4935 8 6 7.1780 1.0507 1.5215 9 6 6.3865 1.6965 2.4543 10 6 4.9958 1.6000 2.3269 11 6 4.1050 2.2646 3.2969 12 8 3.1189 2.8603 2.9078 13 7 4.3810 2.2068 4.6149 14 6 5.4699 1.4332 5.2291 15 6 5.3819 1.6497 6.7545 16 6 3.9051 2.0789 6.9599 17 1 3.2483 1.2101 7.0048 18 7 3.7606 2.9054 8.1608 19 6 4.4901 4.1711 8.2711 20 6 2.9437 2.4949 9.1803 21 1 2.7198 1.4456 9.3038 22 6 2.4033 3.4275 10.0550 23 7 2.5236 4.7137 9.8026 24 14 1.5053 2.8572 11.5905 25 1 2.4711 2.7336 12.7117 26 1 0.4569 3.8466 11.9471 27 1 0.8738 1.5379 11.3334 28 6 3.6450 2.9139 5.6786 29 1 -1.0501 -0.0003 -0.0001 30 1 3.0091 0.4441 -0.9272 31 1 3.0099 -1.0237 0.0798 32 1 7.1980 -0.1561 -0.2367 33 1 8.2545 1.1014 1.5924 34 1 6.8305 2.2579 3.2630 35 1 5.3493 0.3750 4.9973 36 1 6.4315 1.7868 4.8570 37 1 5.5919 0.7229 7.2883 38 1 6.0634 2.4389 7.0720 39 1 3.8464 4.9905 7.9510 40 1 4.7904 4.3283 9.3070 41 1 5.3761 4.1362 7.6372 42 1 2.1463 5.3653 10.4140 43 1 4.0305 3.9264 5.7981 44 1 2.5792 2.9373 5.4515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972758034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:33 Heat of formation + Delta-G solvation = 68.028515 kcal Electronic energy + Delta-G solvation = -27678.409663 eV Core-core repulsion = 23792.673396 eV Total energy + Delta-G solvation = -3885.736266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13336 -39.43275 -38.28883 -37.28929 -34.83031 -33.65246 -33.03456 -31.55180 -30.88284 -29.72914 -28.05279 -27.54470 -26.07596 -25.08072 -23.45993 -23.03453 -22.26090 -19.83078 -19.31300 -18.89749 -18.54266 -17.23680 -17.16256 -16.89150 -16.47765 -15.73222 -15.55860 -15.34099 -14.78587 -14.44248 -14.24871 -13.85872 -13.72926 -13.35939 -13.26972 -13.09958 -12.79285 -12.44244 -12.40802 -12.25779 -12.04464 -11.87465 -11.47585 -10.94873 -10.88595 -10.83402 -10.49451 -10.48484 -10.38410 -10.29382 -10.23337 -10.18239 -9.88997 -9.82630 -9.57145 -8.78988 -8.60402 -8.28977 -6.80271 -5.76593 -3.26374 0.55356 0.95798 2.00100 2.57386 2.83589 3.12547 3.29112 3.36783 3.43083 3.44549 3.55838 3.94275 4.13684 4.44564 4.48194 4.54895 4.70460 4.89377 4.99155 5.07954 5.09796 5.10430 5.27028 5.33357 5.48564 5.56539 5.62825 5.65088 5.73622 5.83003 5.90001 6.00806 6.04561 6.30856 6.37006 6.53863 6.63733 6.76580 6.87363 6.95220 7.32303 7.34372 7.44654 7.70990 7.77695 7.78571 8.33995 8.38288 9.18648 9.79840 10.28930 11.27424 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.002947 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.893299 B = 9497.493780 C =10784.057919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.203 4.203 3 C 0.183 3.817 4 O -0.277 6.277 5 C 0.367 3.633 6 N -0.545 5.545 7 C 0.158 3.842 8 C -0.216 4.216 9 C -0.011 4.011 10 C -0.190 4.190 11 C 0.577 3.423 12 O -0.522 6.522 13 N -0.609 5.609 14 C 0.101 3.899 15 C -0.153 4.153 16 C 0.173 3.827 17 H 0.078 0.922 18 N -0.585 5.585 19 C 0.160 3.840 20 C -0.261 4.261 21 H 0.070 0.930 22 C 0.006 3.994 23 N -0.905 5.905 24 Si 0.908 3.092 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.089 3.911 29 H 0.225 0.775 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.000 1.000 42 H 0.254 0.746 43 H 0.070 0.930 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.990 -10.037 -18.845 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.203 4.203 3 C 0.109 3.891 4 O -0.183 6.183 5 C 0.188 3.812 6 N -0.269 5.269 7 C 0.001 3.999 8 C -0.236 4.236 9 C -0.036 4.036 10 C -0.196 4.196 11 C 0.364 3.636 12 O -0.398 6.398 13 N -0.344 5.344 14 C -0.022 4.022 15 C -0.194 4.194 16 C 0.063 3.937 17 H 0.097 0.903 18 N -0.305 5.305 19 C 0.016 3.984 20 C -0.391 4.391 21 H 0.088 0.912 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.738 3.262 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.035 4.035 29 H 0.242 0.758 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.018 0.982 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.730 -9.894 -19.507 23.550 hybrid contribution -0.140 0.168 1.294 1.313 sum 8.590 -9.726 -18.212 22.363 Atomic orbital electron populations 1.25018 0.95859 0.98970 0.97436 1.22310 0.93625 1.01814 1.02565 1.19111 0.84367 0.96613 0.88991 1.86444 1.16429 1.67978 1.47432 1.19634 0.83891 0.89085 0.88636 1.67425 1.06791 1.24361 1.28327 1.22603 0.88992 0.92891 0.95390 1.21938 1.01714 1.02480 0.97464 1.21791 0.90884 0.93750 0.97222 1.19980 0.94543 1.06241 0.98813 1.17399 0.84653 0.80719 0.80845 1.90825 1.27182 1.43504 1.78311 1.48393 1.32862 1.47983 1.05138 1.22172 0.89689 0.95451 0.94896 1.23230 1.01623 1.02460 0.92045 1.21503 0.92972 0.93756 0.85510 0.90346 1.43842 1.50998 1.21853 1.13836 1.20828 0.91506 0.87453 0.98609 1.19229 1.22957 0.92045 1.04838 0.91210 1.25114 0.98671 0.95345 1.00169 1.70058 1.48353 0.99668 1.36862 0.86202 0.79212 0.77767 0.83013 1.21427 1.21660 1.20407 1.23147 0.97076 0.96682 0.86612 0.75836 0.89016 0.89058 0.81821 0.83787 0.83212 0.91963 0.92084 0.90585 0.90442 0.94874 0.93737 0.98151 0.93596 0.91210 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 19.25 29.55 0.57 -1.12 16 2 C -0.20 -2.56 13.73 -37.12 -0.51 -3.07 16 3 C 0.18 2.18 5.78 34.37 0.20 2.38 16 4 O -0.28 -4.32 8.95 -32.06 -0.29 -4.61 16 5 C 0.37 5.15 7.48 -16.61 -0.12 5.02 16 6 N -0.54 -6.14 9.21 -12.98 -0.12 -6.26 16 7 C 0.16 1.27 11.17 -17.49 -0.20 1.07 16 8 C -0.22 -1.62 10.09 -39.50 -0.40 -2.02 16 9 C -0.01 -0.11 8.58 -38.89 -0.33 -0.44 16 10 C -0.19 -2.67 5.44 -104.69 -0.57 -3.24 16 11 C 0.58 10.25 7.23 -12.48 -0.09 10.16 16 12 O -0.52 -11.40 16.50 -8.81 -0.15 -11.55 16 13 N -0.61 -10.22 3.32 -171.61 -0.57 -10.79 16 14 C 0.10 1.34 5.89 -3.07 -0.02 1.32 16 15 C -0.15 -2.37 6.49 -24.90 -0.16 -2.53 16 16 C 0.17 3.44 3.55 -65.66 -0.23 3.21 16 17 H 0.08 1.60 7.96 -51.93 -0.41 1.19 16 18 N -0.58 -14.14 2.96 -170.89 -0.51 -14.64 16 19 C 0.16 3.80 7.54 59.85 0.45 4.25 16 20 C -0.26 -7.00 9.61 -15.06 -0.14 -7.15 16 21 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 22 C 0.01 0.16 5.18 -17.43 -0.09 0.07 16 23 N -0.91 -26.00 10.58 55.49 0.59 -25.42 16 24 Si 0.91 21.58 29.56 -169.99 -5.03 16.56 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.09 1.74 6.49 -2.41 -0.02 1.73 16 29 H 0.22 1.52 7.80 -54.09 -0.42 1.10 16 30 H 0.09 0.95 8.10 -51.92 -0.42 0.53 16 31 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.15 1.29 6.03 -52.49 -0.32 0.97 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.64 5.66 -51.93 -0.29 0.35 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.22 6.47 -51.93 -0.34 0.88 16 39 H 0.03 0.86 7.32 -51.93 -0.38 0.48 16 40 H 0.04 1.13 7.33 -51.93 -0.38 0.75 16 41 H 0.00 0.00 6.37 -51.93 -0.33 -0.33 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.07 1.43 6.96 -51.93 -0.36 1.07 16 44 H 0.07 1.63 7.99 -51.93 -0.41 1.22 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -34.29 370.54 -7.88 -42.17 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.73 Total: -0.70 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -1.66 Total: 9.65 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.61 Total: -57.11 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.43 Total: -16.16 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.29 -7.88 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972758034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.197 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds