Wall clock time and date at job start Tue Mar 31 2020 05:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 110.78329 * 2 1 4 4 C 1.54324 * 110.71749 * 236.75957 * 2 1 3 5 5 N 1.47019 * 107.27631 * 263.83127 * 4 2 1 6 6 C 1.36935 * 125.65235 * 181.09296 * 5 4 2 7 7 H 1.08008 * 119.99765 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00502 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99545 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00441 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47637 * 89.99830 * 10 8 6 12 12 H 1.48501 * 109.47363 * 209.99830 * 10 8 6 13 13 H 1.48504 * 109.47295 * 329.99793 * 10 8 6 14 14 C 1.47420 * 108.70140 * 1.06222 * 5 4 2 15 15 C 1.54914 * 104.83110 * 335.86928 * 14 5 4 16 16 H 1.09003 * 111.00422 * 155.12561 * 15 14 5 17 17 N 1.46496 * 111.00257 * 278.93695 * 15 14 5 18 18 C 1.34778 * 119.99965 * 273.54414 * 17 15 14 19 19 O 1.21589 * 120.00170 * 359.97438 * 18 17 15 20 20 C 1.47535 * 119.99968 * 180.02562 * 18 17 15 21 21 C 1.39250 * 120.24225 * 0.21647 * 20 18 17 22 22 C 1.38443 * 120.27235 * 180.25570 * 21 20 18 23 23 C 1.37642 * 120.79885 * 359.48559 * 22 21 20 24 24 C 1.40073 * 120.15257 * 0.27426 * 23 22 21 25 25 N 1.35410 * 133.03418 * 179.97438 * 24 23 22 26 26 N 1.28659 * 110.10354 * 180.02562 * 25 24 23 27 27 N 1.40242 * 109.43391 * 359.97438 * 26 25 24 28 28 H 0.97010 * 126.66216 * 179.97438 * 27 26 25 29 29 C 1.36978 * 106.67776 * 0.02562 * 27 26 25 30 30 H 1.09003 * 109.46783 * 296.75725 * 1 2 3 31 31 H 1.09001 * 109.47184 * 56.75484 * 1 2 3 32 32 H 1.08998 * 109.47799 * 176.76345 * 1 2 3 33 33 H 1.08994 * 109.47031 * 183.23842 * 3 2 1 34 34 H 1.09002 * 109.47348 * 303.24344 * 3 2 1 35 35 H 1.08998 * 109.46984 * 63.24364 * 3 2 1 36 36 H 1.09001 * 109.88236 * 144.41206 * 4 2 1 37 37 H 1.09009 * 109.88009 * 23.25024 * 4 2 1 38 38 H 0.96998 * 119.99920 * 180.02562 * 9 8 6 39 39 H 1.09006 * 110.36829 * 217.03263 * 14 5 4 40 40 H 1.09004 * 110.37273 * 94.70523 * 14 5 4 41 41 H 0.96993 * 120.00335 * 93.55198 * 17 15 14 42 42 H 1.07993 * 119.86522 * 0.02562 * 21 20 18 43 43 H 1.08002 * 119.60297 * 179.76708 * 22 21 20 44 44 H 1.08000 * 119.92484 * 180.25754 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0759 -0.7912 -1.2073 5 7 2.3715 -2.1532 -0.7391 6 6 2.8943 -3.1634 -1.5016 7 1 3.1248 -2.9905 -2.5425 8 6 3.1280 -4.4097 -0.9368 9 7 2.8466 -4.6205 0.3316 10 14 3.8418 -5.7874 -1.9766 11 1 5.3242 -5.7497 -1.8984 12 1 3.3525 -7.0947 -1.4697 13 1 3.4161 -5.6134 -3.3887 14 6 2.0125 -2.2510 0.6874 15 6 2.0790 -0.7955 1.2137 16 1 1.4401 -0.6665 2.0874 17 7 3.4595 -0.4084 1.5143 18 6 3.9888 -0.6842 2.7227 19 8 3.3203 -1.2539 3.5636 20 6 5.3789 -0.2939 3.0257 21 6 6.1472 0.3637 2.0684 22 6 7.4535 0.7256 2.3502 23 6 8.0109 0.4531 3.5788 24 6 7.2596 -0.2028 4.5624 25 7 7.5361 -0.5933 5.8292 26 7 6.5097 -1.1700 6.3481 27 7 5.4636 -1.1896 5.4142 28 1 4.5782 -1.5640 5.5441 29 6 5.9352 -0.5783 4.2828 30 1 -0.3633 0.4627 0.9177 31 1 -0.3633 0.5634 -0.8595 32 1 -0.3634 -1.0260 -0.0580 33 1 3.1610 1.4060 -0.0581 34 1 1.6751 1.9700 -0.8595 35 1 1.7692 1.9342 0.9176 36 1 2.9868 -0.3207 -1.5776 37 1 1.3261 -0.8255 -1.9978 38 1 3.0102 -5.4913 0.7264 39 1 2.7292 -2.8789 1.2168 40 1 1.0037 -2.6488 0.7984 41 1 3.9926 0.0464 0.8438 42 1 5.7236 0.5890 1.1009 43 1 8.0408 1.2319 1.5984 44 1 9.0299 0.7455 3.7849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974617476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:07 Heat of formation + Delta-G solvation = 101.999766 kcal Electronic energy + Delta-G solvation = -28763.063714 eV Core-core repulsion = 24911.093303 eV Total energy + Delta-G solvation = -3851.970411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.19549 -39.91491 -38.23417 -37.23246 -33.97405 -33.51917 -33.25121 -30.82871 -30.63479 -30.20040 -28.14746 -26.89794 -25.68433 -24.66629 -23.81600 -22.83645 -22.55887 -20.87251 -19.99885 -19.05259 -17.98360 -17.93366 -16.82470 -16.63999 -16.02627 -15.78455 -15.33185 -14.81046 -14.71226 -14.37318 -14.10553 -13.88875 -13.80768 -13.26014 -12.87003 -12.61332 -12.36682 -12.33761 -12.12460 -12.09022 -11.98970 -11.82224 -11.39943 -11.30253 -11.26095 -11.21035 -11.07024 -10.82035 -10.50418 -10.28617 -10.05322 -9.89682 -9.75889 -9.69015 -9.06892 -8.76280 -8.66452 -8.40246 -6.87655 -5.68743 -3.11927 0.10757 1.11112 1.88737 2.41531 2.97598 3.34175 3.36419 3.41305 3.43945 3.70065 4.01045 4.43874 4.45117 4.55924 4.73974 4.76559 4.88539 4.99341 5.14356 5.19139 5.35238 5.46445 5.50876 5.55976 5.69064 5.73475 5.79437 5.92570 5.93513 6.01884 6.04079 6.09136 6.15924 6.30364 6.37153 6.41679 6.51461 6.59369 6.62974 6.86274 6.95612 7.39620 7.56527 7.75265 7.85632 7.87087 8.32639 8.44916 9.16298 9.78060 10.41361 11.33929 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.004348 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.288664 B = 6438.087553 C = 7616.775138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.226 4.226 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.146 3.854 15 C 0.123 3.877 16 H 0.087 0.913 17 N -0.689 5.689 18 C 0.561 3.439 19 O -0.550 6.550 20 C -0.129 4.129 21 C -0.028 4.028 22 C -0.142 4.142 23 C -0.011 4.011 24 C -0.031 4.031 25 N -0.217 5.217 26 N -0.005 5.005 27 N -0.473 5.473 28 H 0.459 0.541 29 C 0.141 3.859 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.025 0.975 38 H 0.252 0.748 39 H 0.114 0.886 40 H 0.021 0.979 41 H 0.396 0.604 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 15.003 2.918 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.021 3.979 15 C 0.018 3.982 16 H 0.105 0.895 17 N -0.339 5.339 18 C 0.348 3.652 19 O -0.430 6.430 20 C -0.137 4.137 21 C -0.051 4.051 22 C -0.163 4.163 23 C -0.034 4.034 24 C -0.155 4.155 25 N -0.097 5.097 26 N 0.013 4.987 27 N -0.197 5.197 28 H 0.309 0.691 29 C 0.015 3.985 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.131 0.869 40 H 0.039 0.961 41 H 0.233 0.767 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.689 13.968 4.955 15.545 hybrid contribution -0.354 -0.686 -1.865 2.018 sum 4.335 13.283 3.090 14.310 Atomic orbital electron populations 1.21686 0.93387 1.02577 1.00956 1.21849 0.96161 0.94532 0.96282 1.21731 1.00229 0.95469 1.01521 1.21419 0.96484 0.86806 0.93630 1.44454 1.74223 1.06697 1.07301 1.19020 1.34277 0.89243 0.92902 0.90519 1.24785 1.01620 0.97634 0.96342 1.69792 1.53472 1.22375 1.10861 0.86122 0.78736 0.81765 0.79145 1.21647 1.21667 1.20719 1.22313 1.00217 0.90243 0.85151 1.22593 0.80694 0.98518 0.96396 0.89495 1.45668 1.15166 1.59109 1.13940 1.17835 0.85507 0.79081 0.82754 1.90699 1.61957 1.42675 1.47632 1.19096 0.95882 1.06550 0.92178 1.21411 0.93645 0.92372 0.97653 1.20928 0.95318 1.03112 0.96975 1.20604 0.99319 0.93055 0.90382 1.19953 0.93193 1.08502 0.93860 1.74862 1.18807 1.09293 1.06746 1.81567 0.90096 1.14673 1.12381 1.47912 1.16046 1.46570 1.09166 0.69091 1.19011 0.94217 0.96104 0.89187 0.93045 0.92593 0.91698 0.93052 0.92501 0.92711 0.96053 0.95752 0.93682 0.86861 0.96077 0.76744 0.84098 0.83775 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.41 37.16 0.31 -1.49 16 2 C -0.09 -1.32 0.81 -152.68 -0.12 -1.45 16 3 C -0.13 -1.53 8.07 37.16 0.30 -1.23 16 4 C 0.14 2.67 6.41 -3.07 -0.02 2.65 16 5 N -0.60 -14.31 3.39 -170.07 -0.58 -14.88 16 6 C -0.23 -6.03 10.27 -15.06 -0.15 -6.19 16 7 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16 10 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.15 3.43 5.27 -2.53 -0.01 3.41 16 15 C 0.12 2.20 2.56 -65.78 -0.17 2.03 16 16 H 0.09 1.58 7.63 -51.93 -0.40 1.19 16 17 N -0.69 -11.05 4.64 -52.77 -0.24 -11.29 16 18 C 0.56 9.57 7.76 -12.47 -0.10 9.48 16 19 O -0.55 -10.90 15.03 5.29 0.08 -10.82 16 20 C -0.13 -1.86 5.88 -104.93 -0.62 -2.47 16 21 C -0.03 -0.31 9.53 -39.13 -0.37 -0.68 16 22 C -0.14 -1.24 9.98 -39.72 -0.40 -1.64 16 23 C -0.01 -0.11 10.09 -39.11 -0.39 -0.51 16 24 C -0.03 -0.43 7.26 -84.76 -0.62 -1.04 16 25 N -0.22 -3.29 12.40 32.15 0.40 -2.89 16 26 N -0.01 -0.08 13.83 60.35 0.83 0.75 16 27 N -0.47 -7.18 7.32 32.50 0.24 -6.94 16 28 H 0.46 6.67 7.72 -182.48 -1.41 5.26 16 29 C 0.14 2.12 6.93 -83.92 -0.58 1.54 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.05 7.57 -51.93 -0.39 0.66 16 33 H 0.05 0.55 6.35 -51.93 -0.33 0.22 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.02 0.39 7.76 -51.93 -0.40 -0.02 16 37 H 0.02 0.47 7.84 -51.92 -0.41 0.06 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 39 H 0.11 3.13 5.87 -51.93 -0.30 2.82 16 40 H 0.02 0.54 7.80 -51.93 -0.41 0.14 16 41 H 0.40 5.43 4.91 -40.82 -0.20 5.23 16 42 H 0.14 1.20 6.39 -52.49 -0.34 0.87 16 43 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -32.47 356.98 -8.06 -40.53 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.67 Total: 7.30 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -3.04 Total: 2.10 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 1.21 Total: -61.31 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.47 -8.06 -40.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974617476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.534 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds