Wall clock time and date at job start Tue Mar 31 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.78204 * 2 1 4 4 C 1.54327 * 110.72258 * 123.23819 * 2 1 3 5 5 N 1.47021 * 107.40146 * 96.24470 * 4 2 1 6 6 C 1.36935 * 125.64542 * 178.90402 * 5 4 2 7 7 H 1.07998 * 120.00239 * 349.93880 * 6 5 4 8 8 C 1.38810 * 119.99952 * 169.94871 * 6 5 4 9 9 N 1.31625 * 120.00077 * 350.41594 * 8 6 5 10 10 Si 1.86803 * 120.00274 * 170.41859 * 8 6 5 11 11 H 1.48495 * 109.47346 * 94.13589 * 10 8 6 12 12 H 1.48496 * 109.47417 * 214.13970 * 10 8 6 13 13 H 1.48498 * 109.46994 * 334.13857 * 10 8 6 14 14 C 1.47420 * 108.70266 * 358.86765 * 5 4 2 15 15 C 1.54907 * 104.83467 * 24.12769 * 14 5 4 16 16 H 1.09003 * 111.00450 * 204.88103 * 15 14 5 17 17 N 1.46503 * 111.00457 * 81.06338 * 15 14 5 18 18 C 1.34771 * 120.00097 * 86.45345 * 17 15 14 19 19 O 1.21599 * 120.00169 * 0.02562 * 18 17 15 20 20 C 1.47527 * 120.00051 * 179.97438 * 18 17 15 21 21 C 1.39248 * 120.24640 * 359.72447 * 20 18 17 22 22 C 1.38445 * 120.27516 * 179.70073 * 21 20 18 23 23 C 1.37640 * 120.79633 * 0.62644 * 22 21 20 24 24 C 1.40077 * 120.15564 * 359.65153 * 23 22 21 25 25 N 1.35405 * 133.03605 * 180.02562 * 24 23 22 26 26 N 1.28660 * 110.10651 * 179.97438 * 25 24 23 27 27 N 1.40253 * 109.43275 * 0.02562 * 26 25 24 28 28 H 0.96993 * 126.66495 * 180.02562 * 27 26 25 29 29 C 1.36983 * 106.67168 * 359.97438 * 27 26 25 30 30 H 1.08996 * 109.46763 * 298.21700 * 1 2 3 31 31 H 1.09000 * 109.46958 * 58.21687 * 1 2 3 32 32 H 1.09001 * 109.46992 * 178.21259 * 1 2 3 33 33 H 1.09001 * 109.47638 * 181.78612 * 3 2 1 34 34 H 1.09002 * 109.47110 * 301.78119 * 3 2 1 35 35 H 1.08996 * 109.47225 * 61.78208 * 3 2 1 36 36 H 1.09005 * 109.87744 * 336.75461 * 4 2 1 37 37 H 1.08991 * 109.88624 * 215.74710 * 4 2 1 38 38 H 0.96996 * 119.99640 * 180.02562 * 9 8 6 39 39 H 1.09000 * 110.36795 * 142.96720 * 14 5 4 40 40 H 1.08997 * 110.36592 * 265.17817 * 14 5 4 41 41 H 0.97006 * 119.99749 * 266.45539 * 17 15 14 42 42 H 1.08002 * 119.86187 * 0.02562 * 21 20 18 43 43 H 1.07999 * 119.59759 * 180.29870 * 22 21 20 44 44 H 1.08006 * 119.92277 * 179.67935 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7912 1.2073 5 7 2.3744 -2.1534 0.7417 6 6 2.8979 -3.1614 1.5065 7 1 3.2778 -2.9480 2.4946 8 6 2.9405 -4.4576 1.0116 9 7 2.3125 -4.7564 -0.1060 10 14 3.8888 -5.7781 1.9317 11 1 2.9662 -6.5119 2.8347 12 1 4.4874 -6.7266 0.9585 13 1 4.9669 -5.1454 2.7334 14 6 2.0157 -2.2546 -0.6846 15 6 2.0792 -0.8001 -1.2137 16 1 1.4401 -0.6740 -2.0877 17 7 3.4590 -0.4107 -1.5150 18 6 3.9890 -0.6877 -2.7228 19 8 3.3218 -1.2604 -3.5627 20 6 5.3783 -0.2950 -3.0264 21 6 6.1448 0.3671 -2.0708 22 6 7.4506 0.7304 -2.3529 23 6 8.0086 0.4568 -3.5810 24 6 7.2589 -0.2030 -4.5633 25 7 7.5362 -0.5953 -5.8292 26 7 6.5113 -1.1758 -6.3469 27 7 5.4652 -1.1961 -5.4129 28 1 4.5809 -1.5729 -5.5418 29 6 5.9355 -0.5812 -4.2827 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3633 -1.0272 -0.0321 33 1 3.1621 1.4058 -0.0320 34 1 1.6957 1.9622 -0.8736 35 1 1.7475 1.9425 0.9055 36 1 1.3263 -0.8255 1.9977 37 1 2.9853 -0.3191 1.5793 38 1 2.3420 -5.6622 -0.4515 39 1 2.7337 -2.8821 -1.2128 40 1 1.0086 -2.6566 -0.7949 41 1 3.9912 0.0466 -0.8451 42 1 5.7205 0.5936 -1.1038 43 1 8.0367 1.2393 -1.6020 44 1 9.0270 0.7512 -3.7877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974617491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:11 Heat of formation + Delta-G solvation = 100.157883 kcal Electronic energy + Delta-G solvation = -28704.006353 eV Core-core repulsion = 24851.956072 eV Total energy + Delta-G solvation = -3852.050281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23441 -39.95994 -38.25548 -37.27527 -33.98350 -33.55878 -33.26721 -30.87700 -30.65790 -30.23887 -28.16647 -26.90076 -25.70194 -24.70396 -23.83629 -22.85235 -22.59784 -20.92228 -20.05015 -19.08360 -18.01697 -17.97339 -16.81763 -16.65457 -16.05153 -15.82386 -15.37130 -14.83490 -14.74962 -14.41356 -14.16639 -13.88884 -13.82572 -13.28282 -12.85647 -12.64897 -12.40054 -12.32261 -12.16099 -12.11086 -12.01012 -11.85477 -11.44917 -11.38609 -11.28686 -11.28353 -10.96057 -10.82849 -10.49337 -10.29514 -10.10060 -9.97944 -9.80116 -9.72883 -9.10879 -8.75244 -8.64365 -8.46590 -6.84677 -5.78691 -3.12197 0.06588 1.07021 1.84684 2.37654 2.92648 3.29038 3.36011 3.41687 3.44008 3.64546 3.97211 4.40913 4.44621 4.51833 4.69673 4.72266 4.85807 4.95430 5.13434 5.17348 5.31340 5.44427 5.47691 5.54576 5.66667 5.69542 5.78281 5.88610 5.91814 5.99887 6.02278 6.07702 6.13818 6.28935 6.33462 6.43113 6.49380 6.55753 6.63315 6.85133 6.91768 7.42701 7.48844 7.70916 7.77857 7.82278 8.21143 8.38675 9.13584 9.76390 10.42548 11.33609 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.004289 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.619651 B = 6527.309700 C = 7673.331070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.132 4.132 4 C 0.142 3.858 5 N -0.599 5.599 6 C -0.233 4.233 7 H 0.076 0.924 8 C -0.003 4.003 9 N -0.914 5.914 10 Si 0.908 3.092 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.169 3.831 15 C 0.122 3.878 16 H 0.089 0.911 17 N -0.691 5.691 18 C 0.560 3.440 19 O -0.550 6.550 20 C -0.131 4.131 21 C -0.028 4.028 22 C -0.142 4.142 23 C -0.010 4.010 24 C -0.031 4.031 25 N -0.217 5.217 26 N -0.005 5.005 27 N -0.474 5.474 28 H 0.459 0.541 29 C 0.141 3.859 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.022 0.978 38 H 0.253 0.747 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.397 0.603 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 15.444 -3.427 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.087 4.087 3 C -0.189 4.189 4 C 0.016 3.984 5 N -0.326 5.326 6 C -0.361 4.361 7 H 0.093 0.907 8 C -0.201 4.201 9 N -0.561 5.561 10 Si 0.738 3.262 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.044 3.956 15 C 0.017 3.983 16 H 0.107 0.893 17 N -0.341 5.341 18 C 0.347 3.653 19 O -0.430 6.430 20 C -0.139 4.139 21 C -0.050 4.050 22 C -0.163 4.163 23 C -0.033 4.033 24 C -0.155 4.155 25 N -0.097 5.097 26 N 0.013 4.987 27 N -0.197 5.197 28 H 0.309 0.691 29 C 0.014 3.986 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.234 0.766 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.723 14.408 -5.466 16.438 hybrid contribution -0.235 -0.726 1.776 1.933 sum 5.488 13.682 -3.690 15.197 Atomic orbital electron populations 1.21693 0.93309 1.02671 1.01000 1.21874 0.96230 0.94478 0.96109 1.21728 1.00178 0.95444 1.01594 1.21415 0.96462 0.86911 0.93604 1.44431 1.74588 1.06911 1.06633 1.18959 1.32417 0.86329 0.98398 0.90657 1.24814 1.00322 0.96974 0.97959 1.69940 1.44992 1.19050 1.22069 0.86184 0.79607 0.81797 0.78632 1.21565 1.21674 1.20597 1.21758 0.99933 0.89311 0.84642 1.22671 0.80711 0.98351 0.96598 0.89315 1.45731 1.15294 1.58989 1.14048 1.17867 0.85539 0.79152 0.82742 1.90708 1.62008 1.42645 1.47642 1.19087 0.95849 1.06668 0.92259 1.21420 0.93653 0.92303 0.97662 1.20933 0.95311 1.03107 0.96993 1.20617 0.99337 0.92945 0.90368 1.19956 0.93209 1.08449 0.93884 1.74865 1.18815 1.09218 1.06757 1.81578 0.90105 1.14643 1.12329 1.47919 1.16124 1.46463 1.09234 0.69098 1.19017 0.94243 0.96086 0.89204 0.92522 0.93072 0.91587 0.93091 0.92698 0.92416 0.95696 0.96064 0.93632 0.90738 0.94586 0.76629 0.84057 0.83734 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.44 37.16 0.31 -1.50 16 2 C -0.09 -1.29 0.81 -152.54 -0.12 -1.42 16 3 C -0.13 -1.50 8.17 37.16 0.30 -1.20 16 4 C 0.14 2.65 6.40 -3.06 -0.02 2.63 16 5 N -0.60 -14.26 3.39 -170.08 -0.58 -14.83 16 6 C -0.23 -6.23 10.24 -15.06 -0.15 -6.39 16 7 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 8 C 0.00 -0.10 5.40 -17.43 -0.09 -0.19 16 9 N -0.91 -26.72 10.68 55.49 0.59 -26.13 16 10 Si 0.91 21.86 29.56 -169.99 -5.03 16.83 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.17 3.94 4.80 -2.53 -0.01 3.93 16 15 C 0.12 2.14 2.57 -65.65 -0.17 1.98 16 16 H 0.09 1.59 7.63 -51.93 -0.40 1.19 16 17 N -0.69 -10.76 4.63 -52.64 -0.24 -11.01 16 18 C 0.56 9.29 7.76 -12.48 -0.10 9.19 16 19 O -0.55 -10.68 15.03 5.28 0.08 -10.60 16 20 C -0.13 -1.82 5.88 -104.93 -0.62 -2.43 16 21 C -0.03 -0.29 9.53 -39.13 -0.37 -0.66 16 22 C -0.14 -1.19 9.98 -39.72 -0.40 -1.58 16 23 C -0.01 -0.10 10.09 -39.11 -0.39 -0.49 16 24 C -0.03 -0.42 7.26 -84.76 -0.62 -1.03 16 25 N -0.22 -3.21 12.40 32.15 0.40 -2.81 16 26 N 0.00 -0.07 13.83 60.35 0.83 0.76 16 27 N -0.47 -7.02 7.32 32.50 0.24 -6.79 16 28 H 0.46 6.51 7.72 -182.49 -1.41 5.10 16 29 C 0.14 2.06 6.93 -83.92 -0.58 1.48 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.08 7.46 -51.93 -0.39 0.70 16 33 H 0.05 0.53 6.21 -51.93 -0.32 0.21 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.48 7.84 -51.93 -0.41 0.08 16 37 H 0.02 0.38 7.82 -51.93 -0.41 -0.03 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.07 2.04 6.94 -51.93 -0.36 1.68 16 40 H 0.04 0.93 7.66 -51.93 -0.40 0.53 16 41 H 0.40 5.24 4.84 -40.82 -0.20 5.05 16 42 H 0.14 1.14 6.39 -52.49 -0.34 0.80 16 43 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -32.78 357.78 -8.05 -40.83 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.70 Total: 6.05 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -3.03 Total: 2.31 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 1.24 Total: -60.80 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.78 -8.05 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974617491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.985 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds