Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.78206 * 2 1 4 4 C 1.54325 * 110.72125 * 123.24470 * 2 1 3 5 5 N 1.47018 * 107.40412 * 96.24436 * 4 2 1 6 6 C 1.36936 * 125.64899 * 178.89496 * 5 4 2 7 7 H 1.07997 * 119.99931 * 0.02562 * 6 5 4 8 8 C 1.38819 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99956 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47048 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46969 * 120.00174 * 10 8 6 13 13 H 1.48497 * 109.47276 * 240.00208 * 10 8 6 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09000 * 111.00165 * 204.88167 * 15 14 5 17 17 N 1.46495 * 111.00127 * 81.07022 * 15 14 5 18 18 C 1.34779 * 120.00474 * 86.45568 * 17 15 14 19 19 O 1.21591 * 119.99507 * 359.97438 * 18 17 15 20 20 C 1.47534 * 120.00150 * 179.97438 * 18 17 15 21 21 C 1.39413 * 120.75365 * 359.97438 * 20 18 17 22 22 N 1.31915 * 121.01178 * 180.02562 * 21 20 18 23 23 C 1.31798 * 122.60470 * 0.02562 * 22 21 20 24 24 C 1.39442 * 120.63040 * 359.97438 * 23 22 21 25 25 N 1.35703 * 134.43321 * 179.97438 * 24 23 22 26 26 C 1.30130 * 109.49922 * 180.02562 * 25 24 23 27 27 N 1.36258 * 110.05978 * 359.97438 * 26 25 24 28 28 H 0.97000 * 126.29166 * 180.02562 * 27 26 25 29 29 C 1.36924 * 107.40452 * 359.74643 * 27 26 25 30 30 H 1.08999 * 109.47052 * 298.21250 * 1 2 3 31 31 H 1.08993 * 109.46847 * 58.21225 * 1 2 3 32 32 H 1.09005 * 109.46970 * 178.21340 * 1 2 3 33 33 H 1.08999 * 109.47083 * 181.78701 * 3 2 1 34 34 H 1.09002 * 109.47293 * 301.78710 * 3 2 1 35 35 H 1.09000 * 109.47062 * 61.78805 * 3 2 1 36 36 H 1.09002 * 109.88192 * 336.74876 * 4 2 1 37 37 H 1.09000 * 109.88128 * 215.73728 * 4 2 1 38 38 H 0.96998 * 120.00119 * 179.97438 * 9 8 6 39 39 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 40 40 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 41 41 H 0.97004 * 120.00040 * 266.44542 * 17 15 14 42 42 H 1.07996 * 119.49326 * 0.02995 * 21 20 18 43 43 H 1.07993 * 119.68231 * 179.97438 * 23 22 21 44 44 H 1.08004 * 124.96666 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7913 1.2072 5 7 2.3744 -2.1535 0.7415 6 6 2.8980 -3.1616 1.5062 7 1 3.1271 -2.9866 2.5470 8 6 3.1334 -4.4087 0.9438 9 7 2.8538 -4.6221 -0.3245 10 14 3.8471 -5.7841 1.9871 11 1 4.0703 -5.2914 3.3701 12 1 2.8987 -6.9265 2.0161 13 1 5.1390 -6.2279 1.4047 14 6 2.0157 -2.2547 -0.6849 15 6 2.0792 -0.8000 -1.2138 16 1 1.4401 -0.6739 -2.0878 17 7 3.4589 -0.4107 -1.5152 18 6 3.9889 -0.6875 -2.7231 19 8 3.3218 -1.2609 -3.5626 20 6 5.3782 -0.2949 -3.0267 21 6 6.1569 0.3636 -2.0760 22 7 7.3995 0.7174 -2.3422 23 6 7.9735 0.4755 -3.5037 24 6 7.2756 -0.1783 -4.5186 25 7 7.5777 -0.5610 -5.7850 26 6 6.5468 -1.1493 -6.3185 27 7 5.5155 -1.1830 -5.4286 28 1 4.6378 -1.5668 -5.5812 29 6 5.9482 -0.5813 -4.2773 30 1 -0.3633 0.4858 0.9056 31 1 -0.3633 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1621 1.4056 -0.0320 34 1 1.6957 1.9622 -0.8735 35 1 1.7476 1.9425 0.9056 36 1 1.3264 -0.8256 1.9977 37 1 2.9854 -0.3193 1.5792 38 1 3.0186 -5.4934 -0.7176 39 1 2.7337 -2.8821 -1.2130 40 1 1.0085 -2.6566 -0.7952 41 1 3.9912 0.0466 -0.8454 42 1 5.7363 0.5874 -1.1068 43 1 8.9940 0.7866 -3.6710 44 1 6.5138 -1.5526 -7.3199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974621897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = 76.603852 kcal Electronic energy + Delta-G solvation = -28789.618840 eV Core-core repulsion = 24936.547179 eV Total energy + Delta-G solvation = -3853.071661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.51129 -39.87989 -38.56504 -37.77782 -33.94372 -33.37329 -33.15990 -31.24846 -30.74566 -30.06587 -28.14708 -26.89693 -25.66538 -24.82653 -23.44926 -23.11662 -22.19195 -20.75098 -19.93999 -19.04875 -18.41816 -17.66059 -17.22395 -16.73621 -16.01118 -15.70027 -15.29335 -14.92681 -14.75564 -14.43589 -14.13447 -13.98107 -13.80181 -13.73023 -13.25983 -13.04307 -12.75438 -12.60886 -12.25066 -11.99388 -11.82562 -11.37772 -11.22422 -11.08414 -10.95326 -10.82521 -10.51847 -10.49189 -10.33097 -10.21723 -9.99272 -9.84737 -9.74123 -9.40946 -9.19416 -8.73843 -8.60434 -8.37742 -6.85566 -5.67408 -3.10061 0.32340 1.28838 2.39735 2.76204 3.16807 3.37355 3.41719 3.43080 3.45613 3.88066 3.94448 4.26991 4.42118 4.45725 4.77040 4.88988 4.91091 5.07400 5.13701 5.17980 5.22123 5.48351 5.51348 5.56394 5.71803 5.81783 5.86444 5.96843 6.03657 6.06258 6.12199 6.19445 6.29934 6.33862 6.43791 6.53937 6.62713 6.66138 6.89488 7.11128 7.41109 7.47195 7.59181 7.77514 7.82862 7.89000 8.34150 8.47751 9.18076 9.79849 10.43199 11.35472 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.004366 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.545955 B = 6412.121260 C = 7593.722259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.224 4.224 7 H 0.078 0.922 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.147 3.853 15 C 0.124 3.876 16 H 0.087 0.913 17 N -0.690 5.690 18 C 0.566 3.434 19 O -0.551 6.551 20 C -0.166 4.166 21 C 0.138 3.862 22 N -0.488 5.488 23 C 0.193 3.807 24 C -0.019 4.019 25 N -0.481 5.481 26 C 0.262 3.738 27 N -0.576 5.576 28 H 0.439 0.561 29 C 0.130 3.870 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.022 0.978 38 H 0.251 0.749 39 H 0.113 0.887 40 H 0.021 0.979 41 H 0.396 0.604 42 H 0.165 0.835 43 H 0.169 0.831 44 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.131 12.333 -8.473 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.190 4.190 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.352 4.352 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.021 3.979 15 C 0.019 3.981 16 H 0.105 0.895 17 N -0.340 5.340 18 C 0.353 3.647 19 O -0.430 6.430 20 C -0.175 4.175 21 C -0.014 4.014 22 N -0.198 5.198 23 C 0.027 3.973 24 C -0.140 4.140 25 N -0.201 5.201 26 C -0.026 4.026 27 N -0.187 5.187 28 H 0.281 0.719 29 C 0.008 3.992 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.039 0.961 41 H 0.233 0.767 42 H 0.182 0.818 43 H 0.186 0.814 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.926 12.281 -8.722 15.566 hybrid contribution -1.155 -1.519 0.515 1.977 sum 2.770 10.762 -8.207 13.815 Atomic orbital electron populations 1.21684 0.93417 1.02498 1.00976 1.21890 0.96123 0.94543 0.96274 1.21730 1.00313 0.95403 1.01531 1.21416 0.96565 0.86782 0.93628 1.44461 1.74136 1.06764 1.07321 1.19083 1.33964 0.89238 0.92901 0.90430 1.24784 1.01695 0.97645 0.96351 1.69806 1.53757 1.22135 1.10916 0.86045 0.78397 0.82180 0.79156 1.20488 1.21765 1.21831 1.22301 1.00190 0.90236 0.85162 1.22623 0.80695 0.98422 0.96379 0.89549 1.45710 1.15263 1.58982 1.14027 1.17745 0.85309 0.78992 0.82689 1.90690 1.61992 1.42614 1.47753 1.20083 0.96770 1.07438 0.93217 1.22754 0.89012 0.91914 0.97740 1.67680 1.11468 1.20627 1.19993 1.22280 0.99232 0.90403 0.85400 1.20177 0.92888 1.06211 0.94748 1.70465 1.26721 1.16452 1.06464 1.25622 0.82194 0.97771 0.96983 1.43224 1.16744 1.48002 1.10726 0.71913 1.18690 0.95040 0.96938 0.88545 0.92553 0.93098 0.91742 0.93002 0.92734 0.92448 0.95749 0.95967 0.93811 0.86914 0.96092 0.76729 0.81817 0.81396 0.76078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.44 37.16 0.31 -1.52 16 2 C -0.09 -1.37 0.81 -152.54 -0.12 -1.49 16 3 C -0.13 -1.63 8.17 37.15 0.30 -1.33 16 4 C 0.14 2.74 6.40 -3.07 -0.02 2.72 16 5 N -0.60 -14.60 3.39 -170.07 -0.58 -15.18 16 6 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 10 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.15 3.49 5.27 -2.53 -0.01 3.47 16 15 C 0.12 2.27 2.57 -65.65 -0.17 2.10 16 16 H 0.09 1.60 7.63 -51.93 -0.40 1.20 16 17 N -0.69 -11.61 4.63 -52.64 -0.24 -11.85 16 18 C 0.57 10.02 7.77 -12.47 -0.10 9.92 16 19 O -0.55 -10.99 15.26 5.29 0.08 -10.91 16 20 C -0.17 -2.59 5.89 -104.86 -0.62 -3.21 16 21 C 0.14 1.92 10.71 -17.08 -0.18 1.73 16 22 N -0.49 -6.70 10.30 -12.65 -0.13 -6.83 16 23 C 0.19 2.47 11.25 -17.12 -0.19 2.27 16 24 C -0.02 -0.27 7.27 -84.73 -0.62 -0.89 16 25 N -0.48 -6.22 11.28 -12.01 -0.14 -6.35 16 26 C 0.26 2.65 12.97 -89.56 -1.16 1.49 16 27 N -0.58 -7.13 6.02 -11.51 -0.07 -7.20 16 28 H 0.44 5.15 7.92 -40.82 -0.32 4.83 16 29 C 0.13 1.94 6.93 -83.81 -0.58 1.36 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.06 7.46 -51.93 -0.39 0.67 16 33 H 0.05 0.61 6.21 -51.93 -0.32 0.28 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.02 0.48 7.84 -51.93 -0.41 0.07 16 37 H 0.02 0.42 7.82 -51.93 -0.41 0.01 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.11 3.15 5.87 -51.93 -0.31 2.85 16 40 H 0.02 0.54 7.73 -51.93 -0.40 0.14 16 41 H 0.40 5.90 4.88 -40.82 -0.20 5.70 16 42 H 0.16 1.93 6.42 -52.49 -0.34 1.59 16 43 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.22 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 356.69 15.07 5.38 5.38 Total: -1.00 -33.98 356.69 -9.14 -43.12 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.57 Total: 8.96 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -3.41 Total: 10.06 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -0.60 Total: -73.71 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.98 -9.14 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974621897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.724 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds