Wall clock time and date at job start Tue Mar 31 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.91171 * 2 1 4 4 C 1.54903 * 111.00594 * 236.09658 * 2 1 3 5 5 N 1.47426 * 104.83326 * 278.93543 * 4 2 1 6 6 C 1.36936 * 125.64846 * 155.90832 * 5 4 2 7 7 H 1.08002 * 120.00049 * 353.90063 * 6 5 4 8 8 C 1.38814 * 120.00230 * 173.89872 * 6 5 4 9 9 N 1.31621 * 119.99411 * 6.82986 * 8 6 5 10 10 Si 1.86792 * 120.00146 * 186.82962 * 8 6 5 11 11 H 1.48500 * 109.47151 * 94.99069 * 10 8 6 12 12 H 1.48508 * 109.47156 * 214.98402 * 10 8 6 13 13 H 1.48496 * 109.47524 * 334.98438 * 10 8 6 14 14 C 1.47018 * 108.70145 * 335.86914 * 5 4 2 15 15 C 1.54326 * 107.27452 * 1.06344 * 14 5 4 16 16 H 1.08993 * 110.87585 * 140.62461 * 15 14 5 17 17 N 1.46502 * 110.71572 * 263.82991 * 15 14 5 18 18 C 1.34778 * 119.99499 * 268.51542 * 17 15 14 19 19 O 1.21567 * 120.00008 * 0.02562 * 18 17 15 20 20 C 1.47690 * 119.99693 * 180.02562 * 18 17 15 21 21 C 1.39980 * 120.38166 * 0.02562 * 20 18 17 22 22 N 1.31390 * 121.15733 * 179.72613 * 21 20 18 23 23 C 1.32548 * 121.79365 * 359.97438 * 22 21 20 24 24 N 1.37576 * 133.56720 * 180.02562 * 23 22 21 25 25 H 0.97001 * 126.23914 * 359.95517 * 24 23 22 26 26 C 1.36166 * 107.52699 * 179.97438 * 24 23 22 27 27 N 1.30062 * 110.11122 * 359.97438 * 26 24 23 28 28 C 1.35773 * 109.43180 * 0.02562 * 27 26 24 29 29 C 1.39486 * 133.74246 * 180.02562 * 28 27 26 30 30 H 1.09000 * 109.47454 * 296.09836 * 1 2 3 31 31 H 1.09000 * 109.47342 * 56.10127 * 1 2 3 32 32 H 1.09004 * 109.47083 * 176.09890 * 1 2 3 33 33 H 1.09004 * 109.46892 * 183.90104 * 3 2 1 34 34 H 1.08999 * 109.47798 * 303.89901 * 3 2 1 35 35 H 1.09000 * 109.47226 * 63.90314 * 3 2 1 36 36 H 1.09004 * 110.36670 * 37.77341 * 4 2 1 37 37 H 1.08996 * 110.36605 * 160.09422 * 4 2 1 38 38 H 0.97004 * 119.99771 * 179.97438 * 9 8 6 39 39 H 1.08993 * 109.88606 * 241.63959 * 14 5 4 40 40 H 1.09002 * 109.88218 * 120.47626 * 14 5 4 41 41 H 0.96995 * 119.99887 * 88.52202 * 17 15 14 42 42 H 1.07997 * 119.42552 * 359.69729 * 21 20 18 43 43 H 1.08002 * 124.94813 * 179.97438 * 26 24 23 44 44 H 1.07998 * 120.97346 * 359.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 2.0139 -2.2159 -0.7732 6 6 1.9461 -3.3000 -1.6071 7 1 1.8425 -3.1562 -2.6724 8 6 2.0106 -4.5838 -1.0831 9 7 2.0013 -4.7636 0.2208 10 14 2.1105 -6.0561 -2.2283 11 1 3.5322 -6.4425 -2.4148 12 1 1.3617 -7.1944 -1.6376 13 1 1.5172 -5.7021 -3.5427 14 6 2.0286 -2.2646 0.6961 15 6 2.0861 -0.8078 1.2023 16 1 1.4541 -0.6766 2.0805 17 7 3.4667 -0.4155 1.4963 18 6 3.9654 -0.5839 2.7370 19 8 3.2698 -1.0618 3.6120 20 6 5.3569 -0.1879 3.0335 21 6 6.1647 0.3636 2.0321 22 7 7.4030 0.7262 2.2804 23 6 7.9432 0.5886 3.4829 24 7 9.1829 0.8783 4.0043 25 1 9.9304 1.2674 3.5238 26 6 9.1696 0.5191 5.3176 27 7 8.0071 0.0301 5.6358 28 6 7.1979 0.0433 4.5457 29 6 5.8797 -0.3522 4.3183 30 1 -0.3634 0.4521 0.9229 31 1 -0.3634 0.5731 -0.8530 32 1 -0.3633 -1.0253 -0.0699 33 1 3.1636 1.4026 -0.0699 34 1 1.6704 1.9732 -0.8529 35 1 1.7835 1.9299 0.9229 36 1 1.4672 -0.6461 -2.0836 37 1 3.1182 -0.5233 -1.4023 38 1 2.0459 -5.6607 0.5870 39 1 2.9063 -2.8115 1.0402 40 1 1.1219 -2.7479 1.0600 41 1 4.0217 -0.0345 0.7980 42 1 5.7633 0.4930 1.0379 43 1 10.0030 0.6248 5.9964 44 1 5.2811 -0.7738 5.1122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974628487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:23 Heat of formation + Delta-G solvation = 82.369281 kcal Electronic energy + Delta-G solvation = -28165.144024 eV Core-core repulsion = 24312.322371 eV Total energy + Delta-G solvation = -3852.821653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.60464 -40.02240 -38.56002 -37.50268 -33.96828 -33.84683 -33.09293 -31.49683 -30.69747 -30.12094 -28.01161 -26.82335 -25.62564 -24.64969 -24.02041 -23.11827 -22.01779 -20.71876 -20.00773 -18.91161 -18.88466 -17.88508 -16.99452 -16.69589 -16.24243 -15.96538 -15.44990 -14.79970 -14.53836 -14.31838 -14.10774 -13.90373 -13.73036 -13.53331 -13.26546 -13.19538 -12.77840 -12.52589 -12.04852 -11.97158 -11.67750 -11.42455 -11.36300 -11.33271 -11.06752 -10.96802 -10.77011 -10.39761 -10.25210 -10.01287 -9.89703 -9.86364 -9.62816 -9.35137 -9.10550 -8.85969 -8.60622 -8.44102 -6.80183 -5.68523 -3.02206 0.54288 0.66554 2.22096 2.46155 3.01979 3.32839 3.42096 3.47128 3.49702 3.81760 3.86283 4.11905 4.44461 4.51979 4.67110 4.80011 4.81506 4.94457 5.18806 5.28320 5.31988 5.48015 5.53308 5.65430 5.81458 5.85758 5.88743 5.93510 6.03096 6.17022 6.18864 6.21946 6.26160 6.40046 6.58322 6.62158 6.68187 6.71285 6.74255 6.95108 7.35296 7.53893 7.55106 7.67717 7.81427 7.90190 8.27648 8.52429 9.23653 9.84713 10.50368 11.42491 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.003338 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.259259 B = 8387.118156 C = 9409.308694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.915 5.915 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.124 3.876 16 H 0.092 0.908 17 N -0.702 5.702 18 C 0.566 3.434 19 O -0.533 6.533 20 C -0.189 4.189 21 C 0.177 3.823 22 N -0.486 5.486 23 C 0.253 3.747 24 N -0.589 5.589 25 H 0.430 0.570 26 C 0.272 3.728 27 N -0.479 5.479 28 C -0.009 4.009 29 C 0.047 3.953 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.016 0.984 38 H 0.253 0.747 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.394 0.606 42 H 0.170 0.830 43 H 0.226 0.774 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.820 16.073 6.153 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.562 5.562 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.048 3.952 15 C 0.020 3.980 16 H 0.110 0.890 17 N -0.353 5.353 18 C 0.351 3.649 19 O -0.410 6.410 20 C -0.197 4.197 21 C 0.008 3.992 22 N -0.198 5.198 23 C 0.017 3.983 24 N -0.204 5.204 25 H 0.269 0.731 26 C -0.016 4.016 27 N -0.198 5.198 28 C -0.128 4.128 29 C 0.019 3.981 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.230 0.770 42 H 0.187 0.813 43 H 0.243 0.757 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.547 15.507 7.002 20.563 hybrid contribution 0.720 -0.603 -1.308 1.611 sum 12.267 14.904 5.694 20.125 Atomic orbital electron populations 1.21599 0.93242 1.02955 1.00559 1.22029 0.96411 0.94152 0.96576 1.21679 1.00177 0.95584 1.01438 1.21637 0.96578 0.85791 0.94315 1.44429 1.86918 0.99757 1.01761 1.19012 1.43724 0.83808 0.89381 0.90481 1.24824 1.02096 0.97365 0.95919 1.69973 1.56200 1.20653 1.09386 0.86158 0.77522 0.82747 0.79674 1.21743 1.21818 1.20692 1.21550 1.01722 0.88502 0.83437 1.22532 0.80621 0.97597 0.97289 0.88981 1.45886 1.15094 1.63718 1.10559 1.17690 0.85496 0.78685 0.82990 1.90793 1.59846 1.44231 1.46145 1.20795 0.96784 1.07015 0.95123 1.22756 0.86829 0.90935 0.98726 1.66398 1.13426 1.20824 1.19194 1.19139 0.87596 0.99686 0.91881 1.42852 1.11974 1.54254 1.11329 0.73069 1.25517 0.97907 0.95515 0.82642 1.70497 1.01402 1.20484 1.27441 1.19560 0.95934 1.06131 0.91174 1.20884 0.90748 0.90208 0.96270 0.93289 0.92880 0.91188 0.93129 0.92607 0.92777 0.94099 0.96658 0.93693 0.92969 0.93069 0.76990 0.81343 0.75739 0.82539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.57 37.16 0.32 -1.63 16 2 C -0.09 -1.44 0.83 -152.36 -0.13 -1.56 16 3 C -0.13 -1.61 8.22 37.15 0.31 -1.30 16 4 C 0.14 2.73 6.12 -2.53 -0.02 2.72 16 5 N -0.60 -14.69 3.38 -170.08 -0.57 -15.26 16 6 C -0.23 -6.30 10.26 -15.06 -0.15 -6.45 16 7 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 8 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 9 N -0.92 -27.12 10.36 55.49 0.58 -26.55 16 10 Si 0.91 22.17 29.56 -169.99 -5.02 17.14 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.17 4.17 4.80 -3.06 -0.01 4.15 16 15 C 0.12 2.29 2.59 -66.09 -0.17 2.12 16 16 H 0.09 1.77 7.45 -51.93 -0.39 1.38 16 17 N -0.70 -11.29 4.41 -53.02 -0.23 -11.53 16 18 C 0.57 9.68 7.77 -12.40 -0.10 9.58 16 19 O -0.53 -11.02 16.04 5.31 0.09 -10.93 16 20 C -0.19 -2.73 5.89 -104.85 -0.62 -3.35 16 21 C 0.18 2.22 10.69 -17.09 -0.18 2.04 16 22 N -0.49 -6.23 10.37 -11.96 -0.12 -6.36 16 23 C 0.25 3.09 8.45 -155.64 -1.31 1.77 16 24 N -0.59 -4.55 6.20 -13.22 -0.08 -4.63 16 25 H 0.43 1.81 8.96 -40.82 -0.37 1.44 16 26 C 0.27 1.97 12.97 -89.70 -1.16 0.80 16 27 N -0.48 -5.74 11.29 -12.02 -0.14 -5.88 16 28 C -0.01 -0.12 7.23 -84.69 -0.61 -0.73 16 29 C 0.05 0.67 9.75 -38.58 -0.38 0.30 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 33 H 0.05 0.56 6.48 -51.93 -0.34 0.22 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.77 8.05 -51.93 -0.42 0.36 16 37 H 0.02 0.29 7.98 -51.93 -0.41 -0.13 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.05 1.45 7.27 -51.93 -0.38 1.07 16 40 H 0.05 1.40 7.55 -51.93 -0.39 1.00 16 41 H 0.39 5.37 5.15 -40.82 -0.21 5.16 16 42 H 0.17 1.69 6.39 -52.49 -0.34 1.36 16 43 H 0.23 0.36 8.06 -52.49 -0.42 -0.06 16 44 H 0.16 2.27 7.72 -52.49 -0.41 1.86 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -35.87 360.24 -10.12 -45.99 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.71 Total: 4.36 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -4.32 Total: 8.22 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -0.58 Total: -70.20 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.87 -10.12 -45.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974628487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.357 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds