Wall clock time and date at job start Tue Mar 31 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.88908 * 2 1 4 4 C 1.54912 * 111.00325 * 123.88080 * 2 1 3 5 5 N 1.47426 * 104.83261 * 81.06512 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47341 * 89.99896 * 10 8 6 12 12 H 1.48503 * 109.46756 * 209.99724 * 10 8 6 13 13 H 1.48496 * 109.46957 * 329.99498 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.09005 * 110.86995 * 219.37109 * 15 14 5 17 17 N 1.46500 * 110.71866 * 96.17335 * 15 14 5 18 18 C 1.34773 * 120.00063 * 91.47566 * 17 15 14 19 19 O 1.21571 * 120.00423 * 359.97438 * 18 17 15 20 20 C 1.47696 * 119.99666 * 179.97438 * 18 17 15 21 21 C 1.39979 * 120.38415 * 0.02562 * 20 18 17 22 22 N 1.31389 * 121.15849 * 179.97438 * 21 20 18 23 23 C 1.32551 * 121.79344 * 359.97438 * 22 21 20 24 24 N 1.37576 * 133.57011 * 180.02562 * 23 22 21 25 25 H 0.97000 * 126.23558 * 359.97438 * 24 23 22 26 26 C 1.36164 * 107.52521 * 179.97438 * 24 23 22 27 27 N 1.30058 * 110.11281 * 0.02562 * 26 24 23 28 28 C 1.35774 * 109.43660 * 359.97438 * 27 26 24 29 29 C 1.39482 * 133.74461 * 180.33038 * 28 27 26 30 30 H 1.08994 * 109.46864 * 297.56904 * 1 2 3 31 31 H 1.09000 * 109.46578 * 57.57453 * 1 2 3 32 32 H 1.08996 * 109.46833 * 177.57093 * 1 2 3 33 33 H 1.08992 * 109.47271 * 182.42178 * 3 2 1 34 34 H 1.09003 * 109.47056 * 302.43060 * 3 2 1 35 35 H 1.09006 * 109.46578 * 62.42421 * 3 2 1 36 36 H 1.09002 * 110.36496 * 322.22928 * 4 2 1 37 37 H 1.08995 * 110.46379 * 199.95295 * 4 2 1 38 38 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 39 39 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 40 40 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 41 41 H 0.97005 * 119.99678 * 271.47377 * 17 15 14 42 42 H 1.07994 * 119.41953 * 359.95370 * 21 20 18 43 43 H 1.08004 * 124.93936 * 179.97438 * 26 24 23 44 44 H 1.07998 * 120.97231 * 359.91837 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0139 -2.2156 0.7742 6 6 1.9504 -3.2997 1.6085 7 1 1.9505 -3.1578 2.6792 8 6 1.8872 -4.5809 1.0781 9 7 1.8877 -4.7538 -0.2267 10 14 1.7999 -6.0596 2.2162 11 1 0.3787 -6.3777 2.5065 12 1 2.4446 -7.2265 1.5620 13 1 2.5070 -5.7502 3.4848 14 6 2.0286 -2.2650 -0.6952 15 6 2.0862 -0.8084 -1.2019 16 1 1.4542 -0.6775 -2.0803 17 7 3.4668 -0.4162 -1.4960 18 6 3.9655 -0.5851 -2.7366 19 8 3.2700 -1.0634 -3.6115 20 6 5.3572 -0.1892 -3.0332 21 6 6.1653 0.3617 -2.0317 22 7 7.4054 0.7188 -2.2786 23 6 7.9476 0.5750 -3.4796 24 7 9.1898 0.8575 -3.9991 25 1 9.9377 1.2454 -3.5184 26 6 9.1780 0.4932 -5.3111 27 7 8.0143 0.0079 -5.6300 28 6 7.2024 0.0287 -4.5419 29 6 5.8841 -0.3660 -4.3146 30 1 -0.3633 0.4756 0.9109 31 1 -0.3632 0.5511 -0.8675 32 1 -0.3633 -1.0267 -0.0436 33 1 3.1643 1.4028 -0.0434 34 1 1.6902 1.9654 -0.8674 35 1 1.7606 1.9384 0.9110 36 1 1.4671 -0.6454 2.0839 37 1 3.1180 -0.5234 1.4046 38 1 1.8431 -5.6491 -0.5972 39 1 2.9064 -2.8120 -1.0390 40 1 1.1219 -2.7484 -1.0589 41 1 4.0218 -0.0349 -0.7978 42 1 5.7622 0.4960 -1.0389 43 1 10.0132 0.5935 -5.9884 44 1 5.2871 -0.7925 -5.1071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974628490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:27 Heat of formation + Delta-G solvation = 83.192962 kcal Electronic energy + Delta-G solvation = -28154.928791 eV Core-core repulsion = 24302.142855 eV Total energy + Delta-G solvation = -3852.785935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.60647 -40.02578 -38.56029 -37.50243 -33.97284 -33.85051 -33.08885 -31.49858 -30.69058 -30.12217 -28.01818 -26.81534 -25.62181 -24.65009 -24.02229 -23.11979 -22.01946 -20.72252 -20.00473 -18.91307 -18.88548 -17.88953 -16.99962 -16.69010 -16.24461 -15.96753 -15.44645 -14.80055 -14.54471 -14.31860 -14.10405 -13.91037 -13.72679 -13.53507 -13.27840 -13.19737 -12.77790 -12.48375 -12.05005 -11.99232 -11.66222 -11.42827 -11.35218 -11.33376 -11.06722 -10.97220 -10.76773 -10.38868 -10.24794 -10.01077 -9.90161 -9.85704 -9.62130 -9.35292 -9.10731 -8.86173 -8.61826 -8.44642 -6.80549 -5.66904 -3.01648 0.54120 0.66313 2.21915 2.45992 3.01803 3.32579 3.42223 3.46980 3.49489 3.81546 3.86023 4.11700 4.44239 4.52129 4.66896 4.79847 4.81278 4.95098 5.18427 5.29104 5.31202 5.47795 5.55559 5.64764 5.81887 5.85535 5.88601 5.92550 6.03701 6.17611 6.18560 6.22266 6.26429 6.40866 6.58912 6.61847 6.68146 6.71332 6.74081 6.95334 7.35157 7.53838 7.57216 7.65160 7.81299 7.90531 8.27987 8.52250 9.24330 9.85114 10.50235 11.43694 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.003286 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.196068 B = 8519.333872 C = 9490.919261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.174 3.826 15 C 0.124 3.876 16 H 0.092 0.908 17 N -0.702 5.702 18 C 0.566 3.434 19 O -0.533 6.533 20 C -0.189 4.189 21 C 0.176 3.824 22 N -0.486 5.486 23 C 0.253 3.747 24 N -0.589 5.589 25 H 0.430 0.570 26 C 0.273 3.727 27 N -0.479 5.479 28 C -0.009 4.009 29 C 0.047 3.953 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.041 0.959 37 H 0.015 0.985 38 H 0.253 0.747 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.394 0.606 42 H 0.170 0.830 43 H 0.226 0.774 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 15.999 -6.126 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.049 3.951 15 C 0.019 3.981 16 H 0.110 0.890 17 N -0.353 5.353 18 C 0.351 3.649 19 O -0.410 6.410 20 C -0.197 4.197 21 C 0.007 3.993 22 N -0.198 5.198 23 C 0.017 3.983 24 N -0.204 5.204 25 H 0.269 0.731 26 C -0.016 4.016 27 N -0.198 5.198 28 C -0.128 4.128 29 C 0.019 3.981 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.230 0.770 42 H 0.186 0.814 43 H 0.243 0.757 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.804 15.427 -6.975 20.639 hybrid contribution 0.611 -0.599 1.309 1.564 sum 12.415 14.829 -5.666 20.152 Atomic orbital electron populations 1.21591 0.93228 1.02884 1.00592 1.22023 0.96427 0.94122 0.96550 1.21685 1.00185 0.95593 1.01448 1.21636 0.96571 0.85788 0.94342 1.44433 1.86968 0.99686 1.01801 1.19009 1.43957 0.83962 0.88870 0.90503 1.24804 1.02224 0.97361 0.95938 1.69956 1.56582 1.20805 1.09134 0.86152 0.77565 0.82702 0.79509 1.21646 1.21765 1.20802 1.21542 1.01760 0.88425 0.83391 1.22538 0.80599 0.97601 0.97340 0.88969 1.45911 1.15109 1.63703 1.10573 1.17693 0.85498 0.78692 0.82991 1.90795 1.59842 1.44218 1.46143 1.20797 0.96746 1.07007 0.95183 1.22753 0.86815 0.90998 0.98686 1.66398 1.13392 1.20811 1.19246 1.19140 0.87542 0.99716 0.91902 1.42853 1.11803 1.54292 1.11463 0.73067 1.25516 0.97915 0.95486 0.82657 1.70494 1.01310 1.20565 1.27455 1.19561 0.95932 1.06096 0.91210 1.20883 0.90724 0.90226 0.96263 0.92818 0.93349 0.91234 0.93137 0.92778 0.92592 0.94070 0.96724 0.93696 0.93298 0.92674 0.76975 0.81353 0.75738 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.61 37.16 0.32 -1.62 16 2 C -0.09 -1.43 0.83 -152.36 -0.13 -1.56 16 3 C -0.13 -1.62 8.35 37.16 0.31 -1.31 16 4 C 0.14 2.73 6.12 -2.53 -0.02 2.72 16 5 N -0.60 -14.71 3.38 -170.07 -0.58 -15.28 16 6 C -0.23 -6.27 10.28 -15.06 -0.15 -6.42 16 7 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 8 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.19 10.31 55.49 0.57 -26.62 16 10 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.17 4.19 4.73 -3.06 -0.01 4.18 16 15 C 0.12 2.29 2.59 -66.10 -0.17 2.12 16 16 H 0.09 1.77 7.45 -51.93 -0.39 1.39 16 17 N -0.70 -11.29 4.37 -53.02 -0.23 -11.52 16 18 C 0.57 9.67 7.77 -12.40 -0.10 9.57 16 19 O -0.53 -11.01 16.04 5.30 0.09 -10.93 16 20 C -0.19 -2.73 5.89 -104.85 -0.62 -3.34 16 21 C 0.18 2.21 10.69 -17.09 -0.18 2.03 16 22 N -0.49 -6.22 10.37 -11.96 -0.12 -6.34 16 23 C 0.25 3.08 8.45 -155.63 -1.31 1.77 16 24 N -0.59 -4.53 6.20 -13.22 -0.08 -4.61 16 25 H 0.43 1.79 8.96 -40.82 -0.37 1.43 16 26 C 0.27 1.96 12.97 -89.71 -1.16 0.80 16 27 N -0.48 -5.73 11.29 -12.02 -0.14 -5.87 16 28 C -0.01 -0.12 7.23 -84.69 -0.61 -0.73 16 29 C 0.05 0.67 9.75 -38.58 -0.38 0.30 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.28 7.81 -51.93 -0.41 0.87 16 33 H 0.05 0.56 6.27 -51.93 -0.33 0.24 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 37 H 0.02 0.28 8.04 -51.93 -0.42 -0.14 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.05 1.36 7.41 -51.93 -0.38 0.97 16 40 H 0.06 1.51 7.38 -51.93 -0.38 1.12 16 41 H 0.39 5.36 5.09 -40.82 -0.21 5.15 16 42 H 0.17 1.68 6.39 -52.49 -0.34 1.35 16 43 H 0.23 0.35 8.06 -52.48 -0.42 -0.07 16 44 H 0.16 2.27 7.72 -52.49 -0.41 1.86 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -35.88 359.92 -10.10 -45.98 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.70 Total: 4.40 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -4.31 Total: 8.21 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -0.58 Total: -70.24 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.88 -10.10 -45.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974628490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.174 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds