Wall clock time and date at job start Tue Mar 31 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 110.78272 * 2 1 4 4 C 1.54324 * 110.72230 * 236.75990 * 2 1 3 5 5 N 1.47026 * 107.26793 * 263.83017 * 4 2 1 6 6 C 1.36945 * 125.64666 * 181.09242 * 5 4 2 7 7 H 1.07997 * 119.99683 * 173.81218 * 6 5 4 8 8 C 1.38811 * 119.99708 * 353.80902 * 6 5 4 9 9 N 1.31613 * 120.00083 * 6.81552 * 8 6 5 10 10 Si 1.86804 * 119.99829 * 186.80765 * 8 6 5 11 11 H 1.48498 * 109.47088 * 94.98927 * 10 8 6 12 12 H 1.48491 * 109.47446 * 214.99164 * 10 8 6 13 13 H 1.48503 * 109.46870 * 334.99190 * 10 8 6 14 14 C 1.47424 * 108.70788 * 1.05826 * 5 4 2 15 15 C 1.54913 * 104.82903 * 335.87204 * 14 5 4 16 16 H 1.08999 * 111.00200 * 155.12080 * 15 14 5 17 17 N 1.46494 * 111.00240 * 278.93368 * 15 14 5 18 18 C 1.34780 * 120.00317 * 273.54839 * 17 15 14 19 19 O 1.21565 * 119.99454 * 359.97438 * 18 17 15 20 20 C 1.47765 * 120.00221 * 180.02562 * 18 17 15 21 21 C 1.39635 * 121.07376 * 359.97093 * 20 18 17 22 22 C 1.38339 * 119.37378 * 180.02562 * 21 20 18 23 23 N 1.31729 * 121.54908 * 0.22928 * 22 21 20 24 24 C 1.32112 * 121.94367 * 359.54034 * 23 22 21 25 25 N 1.37941 * 133.80800 * 180.13878 * 24 23 22 26 26 H 0.97004 * 126.35490 * 0.28313 * 25 24 23 27 27 C 1.35983 * 107.28814 * 180.28314 * 25 24 23 28 28 N 1.30283 * 110.05535 * 359.97438 * 27 25 24 29 29 C 1.34650 * 109.66831 * 0.02562 * 28 27 25 30 30 H 1.08999 * 109.47214 * 296.76325 * 1 2 3 31 31 H 1.09001 * 109.47152 * 56.76152 * 1 2 3 32 32 H 1.09001 * 109.47406 * 176.76148 * 1 2 3 33 33 H 1.08998 * 109.47031 * 183.24082 * 3 2 1 34 34 H 1.09000 * 109.46430 * 303.23765 * 3 2 1 35 35 H 1.08999 * 109.47199 * 63.23732 * 3 2 1 36 36 H 1.08992 * 109.88411 * 144.41569 * 4 2 1 37 37 H 1.08998 * 109.88105 * 23.24412 * 4 2 1 38 38 H 0.97005 * 120.00047 * 179.97438 * 9 8 6 39 39 H 1.08994 * 110.36837 * 217.03035 * 14 5 4 40 40 H 1.09002 * 110.36862 * 94.70601 * 14 5 4 41 41 H 0.97006 * 120.00176 * 93.54451 * 17 15 14 42 42 H 1.08000 * 120.31301 * 0.04940 * 21 20 18 43 43 H 1.07998 * 119.22751 * 180.02562 * 22 21 20 44 44 H 1.08004 * 124.97640 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 2.3715 -2.1532 -0.7388 6 6 2.8945 -3.1634 -1.5013 7 1 3.1692 -4.1008 -1.0406 8 6 3.0713 -2.9826 -2.8661 9 7 2.8640 -1.8001 -3.4056 10 14 3.6037 -4.4175 -3.9371 11 1 2.4060 -5.0591 -4.5363 12 1 4.4942 -3.9246 -5.0183 13 1 4.3342 -5.4097 -3.1080 14 6 2.0125 -2.2509 0.6877 15 6 2.0789 -0.7954 1.2139 16 1 1.4400 -0.6664 2.0875 17 7 3.4594 -0.4082 1.5145 18 6 3.9887 -0.6839 2.7230 19 8 3.3203 -1.2535 3.5636 20 6 5.3810 -0.2928 3.0264 21 6 6.1685 0.3626 2.0778 22 6 7.4679 0.7122 2.3992 23 7 7.9836 0.4373 3.5797 24 6 7.2883 -0.1766 4.5205 25 7 7.5710 -0.5745 5.8106 26 1 8.4108 -0.4501 6.2798 27 6 6.4537 -1.1735 6.3027 28 7 5.5109 -1.1679 5.4036 29 6 5.9571 -0.5698 4.2828 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3634 -1.0260 -0.0581 33 1 3.1610 1.4061 -0.0581 34 1 1.6750 1.9699 -0.8596 35 1 1.7691 1.9344 0.9176 36 1 2.9868 -0.3208 -1.5775 37 1 1.3262 -0.8256 -1.9977 38 1 2.9880 -1.6737 -4.3594 39 1 2.7292 -2.8788 1.2170 40 1 1.0038 -2.6488 0.7986 41 1 3.9926 0.0466 0.8438 42 1 5.7669 0.5949 1.1025 43 1 8.0747 1.2194 1.6638 44 1 6.3614 -1.5926 7.2938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974631675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:22 Heat of formation + Delta-G solvation = 86.948736 kcal Electronic energy + Delta-G solvation = -28529.600434 eV Core-core repulsion = 24676.977361 eV Total energy + Delta-G solvation = -3852.623073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.54478 -39.84149 -38.47823 -37.65204 -33.89843 -33.74593 -32.96703 -31.45784 -30.91123 -29.86969 -27.77444 -26.75816 -25.72213 -24.94745 -23.42600 -23.30101 -22.01335 -20.87575 -19.94783 -19.04096 -18.11313 -17.74693 -17.26456 -16.77027 -15.93456 -15.83923 -15.26505 -14.93131 -14.55277 -14.44571 -14.14102 -13.88840 -13.71940 -13.47548 -12.97931 -12.87814 -12.79389 -12.54076 -12.23869 -11.88432 -11.74705 -11.38067 -11.24325 -11.12555 -11.03014 -10.86173 -10.75286 -10.27416 -10.19741 -10.00632 -9.87299 -9.79600 -9.49642 -9.20388 -9.07208 -8.72005 -8.63586 -8.45845 -6.78418 -5.71778 -3.02495 0.29784 0.99777 2.32179 2.62298 3.08393 3.36000 3.41230 3.47419 3.48389 3.87163 3.93764 4.26635 4.51779 4.55053 4.65246 4.80881 4.95142 5.06179 5.33723 5.37665 5.42805 5.54415 5.56221 5.66004 5.71708 5.85548 5.89820 5.95016 6.05234 6.18359 6.25421 6.33943 6.35727 6.48843 6.55522 6.65655 6.74439 6.80903 6.86291 7.08744 7.52726 7.58300 7.62666 7.63775 7.81666 7.89385 8.26369 8.55571 9.23923 9.83806 10.50583 11.40436 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.003688 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.444297 B = 7589.607200 C = 8401.520063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C -0.127 4.127 4 C 0.189 3.811 5 N -0.603 5.603 6 C -0.223 4.223 7 H 0.076 0.924 8 C -0.006 4.006 9 N -0.921 5.921 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.126 3.874 15 C 0.140 3.860 16 H 0.089 0.911 17 N -0.696 5.696 18 C 0.551 3.449 19 O -0.511 6.511 20 C -0.026 4.026 21 C -0.147 4.147 22 C 0.135 3.865 23 N -0.472 5.472 24 C 0.230 3.770 25 N -0.591 5.591 26 H 0.428 0.572 27 C 0.271 3.729 28 N -0.460 5.460 29 C 0.053 3.947 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.251 0.749 39 H 0.042 0.958 40 H 0.029 0.971 41 H 0.400 0.600 42 H 0.151 0.849 43 H 0.174 0.826 44 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.434 8.793 15.153 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C -0.185 4.185 4 C 0.064 3.936 5 N -0.329 5.329 6 C -0.352 4.352 7 H 0.094 0.906 8 C -0.202 4.202 9 N -0.569 5.569 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C -0.001 4.001 15 C 0.035 3.965 16 H 0.107 0.893 17 N -0.348 5.348 18 C 0.335 3.665 19 O -0.386 6.386 20 C -0.039 4.039 21 C -0.170 4.170 22 C -0.031 4.031 23 N -0.186 5.186 24 C -0.007 4.007 25 N -0.206 5.206 26 H 0.268 0.732 27 C -0.016 4.016 28 N -0.178 5.178 29 C -0.071 4.071 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.237 0.763 42 H 0.168 0.832 43 H 0.191 0.809 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.965 8.197 15.829 19.138 hybrid contribution 1.067 -0.494 -1.032 1.565 sum 8.032 7.703 14.796 18.514 Atomic orbital electron populations 1.21669 0.93780 1.02165 1.00723 1.22204 0.95973 0.95232 0.97099 1.21668 1.00263 0.95484 1.01104 1.21284 0.98565 0.83380 0.90336 1.44446 1.74419 1.09195 1.04858 1.19063 1.34097 0.92956 0.89063 0.90615 1.24756 1.02004 0.96946 0.96524 1.69949 1.55619 1.20328 1.10989 0.86160 0.77851 0.81778 0.80391 1.21690 1.21846 1.20751 1.21937 0.97854 0.93544 0.86787 1.22194 0.81232 0.96166 0.96924 0.89349 1.45790 1.15055 1.59751 1.14239 1.17875 0.85686 0.80174 0.82715 1.90823 1.60827 1.40148 1.46828 1.19794 0.95023 0.97783 0.91313 1.22277 0.95427 0.99203 1.00127 1.22520 0.92891 0.96213 0.91454 1.66208 1.37937 1.13473 1.00934 1.18972 0.92567 1.01203 0.87925 1.42898 1.16334 1.50394 1.10931 0.73189 1.25743 0.80406 0.95153 1.00309 1.70363 1.28517 1.19331 0.99584 1.19215 0.92108 1.01437 0.94328 0.93539 0.92408 0.92140 0.93106 0.92340 0.93281 0.93924 0.93291 0.93855 0.93957 0.95350 0.76338 0.83164 0.80927 0.75772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.41 37.15 0.31 -1.68 16 2 C -0.10 -1.80 0.81 -152.67 -0.12 -1.93 16 3 C -0.13 -1.84 8.07 37.16 0.30 -1.54 16 4 C 0.19 4.28 4.55 -3.06 -0.01 4.26 16 5 N -0.60 -14.99 3.39 -170.07 -0.58 -15.57 16 6 C -0.22 -6.18 10.26 -15.06 -0.15 -6.34 16 7 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 8 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 9 N -0.92 -26.15 10.36 55.49 0.58 -25.57 16 10 Si 0.91 22.05 29.56 -169.99 -5.02 17.03 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 C 0.13 2.74 6.62 -2.53 -0.02 2.72 16 15 C 0.14 2.55 2.56 -65.78 -0.17 2.39 16 16 H 0.09 1.60 7.63 -51.93 -0.40 1.20 16 17 N -0.70 -11.81 4.65 -52.69 -0.24 -12.06 16 18 C 0.55 9.95 7.79 -12.36 -0.10 9.86 16 19 O -0.51 -10.88 15.93 5.31 0.08 -10.80 16 20 C -0.03 -0.41 5.93 -104.45 -0.62 -1.03 16 21 C -0.15 -1.80 9.60 -39.02 -0.37 -2.17 16 22 C 0.14 1.47 11.14 -17.56 -0.20 1.27 16 23 N -0.47 -5.92 10.35 -12.30 -0.13 -6.04 16 24 C 0.23 3.00 8.46 -155.65 -1.32 1.68 16 25 N -0.59 -5.23 6.23 -13.21 -0.08 -5.32 16 26 H 0.43 2.14 8.96 -40.82 -0.37 1.78 16 27 C 0.27 2.53 12.97 -89.69 -1.16 1.36 16 28 N -0.46 -6.98 10.63 -11.88 -0.13 -7.10 16 29 C 0.05 0.82 6.85 -84.62 -0.58 0.24 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.04 7.57 -51.93 -0.39 0.64 16 33 H 0.05 0.70 6.35 -51.93 -0.33 0.37 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.04 1.05 7.17 -51.93 -0.37 0.68 16 37 H 0.05 1.26 7.07 -51.93 -0.37 0.89 16 38 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.03 0.62 7.80 -51.93 -0.41 0.21 16 41 H 0.40 6.20 5.02 -40.82 -0.21 5.99 16 42 H 0.15 1.53 6.53 -52.49 -0.34 1.19 16 43 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.23 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -36.53 359.01 -10.10 -46.63 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.68 Total: 4.55 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -4.31 Total: 8.84 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -0.58 Total: -71.66 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.53 -10.10 -46.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974631675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.584 kcal (2) G-P(sol) polarization free energy of solvation -36.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds