Wall clock time and date at job start Tue Mar 31 2020 05:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.78318 * 2 1 4 4 C 1.54330 * 110.71839 * 236.75954 * 2 1 3 5 5 N 1.47018 * 107.27281 * 219.44387 * 4 2 1 6 6 C 1.36937 * 125.64652 * 178.97952 * 5 4 2 7 7 H 1.07997 * 120.00142 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99855 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99844 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00002 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47116 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47074 * 120.00037 * 10 8 6 13 13 H 1.48496 * 109.47375 * 240.00211 * 10 8 6 14 14 C 1.47532 * 108.71641 * 358.94537 * 5 4 2 15 15 C 1.54908 * 104.78010 * 24.11710 * 14 5 4 16 16 H 1.09004 * 111.00084 * 204.90241 * 15 14 5 17 17 N 1.46499 * 111.00133 * 81.09187 * 15 14 5 18 18 C 1.34777 * 120.00262 * 89.58143 * 17 15 14 19 19 O 1.21556 * 119.99665 * 359.97438 * 18 17 15 20 20 C 1.47761 * 119.99907 * 179.97438 * 18 17 15 21 21 C 1.39634 * 121.07551 * 0.02562 * 20 18 17 22 22 C 1.38338 * 119.37470 * 179.97438 * 21 20 18 23 23 N 1.31733 * 121.55049 * 359.97438 * 22 21 20 24 24 C 1.32111 * 121.94334 * 359.74074 * 23 22 21 25 25 N 1.37946 * 133.80383 * 179.61955 * 24 23 22 26 26 H 0.97001 * 126.36044 * 0.72489 * 25 24 23 27 27 C 1.35991 * 107.28446 * 180.45122 * 25 24 23 28 28 N 1.30288 * 110.05675 * 0.23325 * 27 25 24 29 29 C 1.34653 * 109.66832 * 359.97438 * 28 27 25 30 30 H 1.09000 * 109.47033 * 296.75680 * 1 2 3 31 31 H 1.08996 * 109.47362 * 56.75620 * 1 2 3 32 32 H 1.09006 * 109.47096 * 176.76255 * 1 2 3 33 33 H 1.08997 * 109.47233 * 183.23906 * 3 2 1 34 34 H 1.08999 * 109.46902 * 303.24443 * 3 2 1 35 35 H 1.08993 * 109.46979 * 63.23960 * 3 2 1 36 36 H 1.09001 * 109.88217 * 338.86496 * 4 2 1 37 37 H 1.09004 * 109.87770 * 99.87125 * 4 2 1 38 38 H 0.97001 * 119.99624 * 179.97438 * 9 8 6 39 39 H 1.09001 * 110.36715 * 265.30960 * 14 5 4 40 40 H 1.08992 * 110.41243 * 142.95395 * 14 5 4 41 41 H 0.97001 * 119.99979 * 269.57499 * 17 15 14 42 42 H 1.07997 * 120.31314 * 359.97438 * 21 20 18 43 43 H 1.08005 * 119.22494 * 180.02562 * 22 21 20 44 44 H 1.07999 * 124.97059 * 180.24629 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0760 -0.7913 -1.2073 5 7 3.2444 -1.5508 -0.7391 6 6 4.0042 -2.3970 -1.5020 7 1 3.7614 -2.5502 -2.5431 8 6 5.0870 -3.0570 -0.9373 9 7 5.3837 -2.8691 0.3312 10 14 6.1230 -4.2119 -1.9777 11 1 5.5851 -4.2485 -3.3614 12 1 7.5267 -3.7282 -2.0055 13 1 6.0810 -5.5765 -1.3935 14 6 3.4636 -1.2499 0.6885 15 6 2.0790 -0.7955 1.2137 16 1 2.1844 -0.1521 2.0872 17 7 1.2271 -1.9489 1.5144 18 6 1.2505 -2.5018 2.7433 19 8 1.9788 -2.0438 3.6020 20 6 0.3909 -3.6648 3.0466 21 6 -0.4536 -4.2092 2.0771 22 6 -1.2430 -5.2986 2.3991 23 7 -1.2175 -5.8370 3.6011 24 6 -0.4361 -5.3713 4.5592 25 7 -0.2205 -5.7290 5.8739 26 1 -0.6465 -6.4600 6.3483 27 6 0.7046 -4.8702 6.3798 28 7 1.0637 -4.0121 5.4675 29 6 0.3984 -4.2615 4.3237 30 1 -0.3633 0.4627 0.9176 31 1 -0.3634 0.5633 -0.8594 32 1 -0.3633 -1.0261 -0.0580 33 1 3.1610 1.4061 -0.0581 34 1 1.6751 1.9700 -0.8595 35 1 1.7692 1.9343 0.9175 36 1 1.3128 -1.4758 -1.5776 37 1 2.3714 -0.1025 -1.9988 38 1 6.1402 -3.3306 0.7258 39 1 4.1933 -0.4478 0.7994 40 1 3.7962 -2.1424 1.2184 41 1 0.6462 -2.3145 0.8290 42 1 -0.4902 -3.7838 1.0851 43 1 -1.8951 -5.7180 1.6472 44 1 1.0860 -4.8958 7.3899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974631679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:25 Heat of formation + Delta-G solvation = 89.365490 kcal Electronic energy + Delta-G solvation = -28705.817867 eV Core-core repulsion = 24853.299593 eV Total energy + Delta-G solvation = -3852.518274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44679 -39.71688 -38.41828 -37.57174 -33.82160 -33.66788 -33.03994 -31.30192 -30.65725 -29.78394 -28.09980 -26.83551 -25.59193 -24.86491 -23.32625 -23.21005 -21.92956 -20.77657 -19.90265 -19.02824 -18.13198 -17.66005 -17.13672 -16.66800 -15.84138 -15.77553 -15.22302 -14.83591 -14.61460 -14.17502 -14.01192 -13.83948 -13.77916 -13.58809 -13.14927 -12.82182 -12.72262 -12.46337 -12.15556 -11.88824 -11.70864 -11.29405 -11.15775 -11.11041 -10.94390 -10.92560 -10.76574 -10.37334 -10.15999 -9.91543 -9.78827 -9.72237 -9.65333 -9.09152 -8.97427 -8.64892 -8.60394 -8.27365 -6.77513 -5.59287 -3.02534 0.40368 1.07996 2.40751 2.72899 3.22466 3.41794 3.46660 3.49953 3.50515 3.99515 4.04966 4.35343 4.51540 4.63907 4.74778 4.88898 5.00833 5.05535 5.27118 5.30665 5.46200 5.55864 5.61895 5.67016 5.79944 5.83021 5.91064 5.94690 6.05924 6.13928 6.21844 6.29346 6.43979 6.44997 6.51951 6.64419 6.72897 6.78478 6.95283 7.02611 7.53973 7.66334 7.68168 7.72510 7.91935 8.06145 8.43385 8.74738 9.25450 9.87309 10.51374 11.43247 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011029 B = 0.004275 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.092626 B = 6547.760953 C = 7709.906391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.144 3.856 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.915 5.915 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.146 3.854 15 C 0.125 3.875 16 H 0.088 0.912 17 N -0.695 5.695 18 C 0.551 3.449 19 O -0.505 6.505 20 C -0.021 4.021 21 C -0.151 4.151 22 C 0.134 3.866 23 N -0.474 5.474 24 C 0.230 3.770 25 N -0.591 5.591 26 H 0.428 0.572 27 C 0.270 3.730 28 N -0.457 5.457 29 C 0.053 3.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.023 0.977 38 H 0.252 0.748 39 H 0.021 0.979 40 H 0.113 0.887 41 H 0.394 0.606 42 H 0.148 0.852 43 H 0.172 0.828 44 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 -1.926 7.639 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.563 5.563 10 Si 0.741 3.259 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.021 3.979 15 C 0.020 3.980 16 H 0.106 0.894 17 N -0.347 5.347 18 C 0.335 3.665 19 O -0.380 6.380 20 C -0.034 4.034 21 C -0.174 4.174 22 C -0.032 4.032 23 N -0.187 5.187 24 C -0.007 4.007 25 N -0.206 5.206 26 H 0.267 0.733 27 C -0.017 4.017 28 N -0.175 5.175 29 C -0.070 4.070 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.131 0.869 41 H 0.230 0.770 42 H 0.166 0.834 43 H 0.189 0.811 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -15.210 -1.707 8.576 17.544 hybrid contribution 0.140 -1.219 -0.945 1.548 sum -15.070 -2.926 7.631 17.144 Atomic orbital electron populations 1.21717 0.94629 1.01140 1.01340 1.21851 0.94833 0.95785 0.96406 1.21681 1.01946 0.94067 1.00878 1.21400 0.90294 0.92943 0.93613 1.44495 1.30661 1.50217 1.07346 1.19061 1.06385 1.17046 0.92851 0.90524 1.24793 0.98764 1.00593 0.96302 1.69823 1.29838 1.45887 1.10778 0.86064 0.80228 0.80516 0.79061 1.20576 1.21791 1.21883 1.22330 0.89179 1.01421 0.85008 1.22538 0.93223 0.85906 0.96320 0.89410 1.45685 1.44148 1.32928 1.11909 1.17798 0.82744 0.82926 0.83015 1.90834 1.39233 1.61406 1.46478 1.19858 0.96409 0.96159 0.90943 1.22211 0.97082 0.98130 0.99979 1.22475 0.96936 0.92445 0.91367 1.66193 1.20819 1.31311 1.00418 1.18971 0.98395 0.95984 0.87315 1.42897 1.38107 1.30760 1.08858 0.73262 1.25754 0.88978 0.86564 1.00413 1.70377 1.24127 1.24100 0.98895 1.19226 0.97731 0.96070 0.93999 0.92773 0.92689 0.93014 0.91727 0.92712 0.93043 0.96133 0.95880 0.93736 0.96091 0.86925 0.77024 0.83408 0.81104 0.75780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.07 37.16 0.30 -1.38 16 2 C -0.09 -1.44 0.80 -152.67 -0.12 -1.56 16 3 C -0.13 -1.94 8.41 37.16 0.31 -1.62 16 4 C 0.14 2.83 6.41 -3.06 -0.02 2.81 16 5 N -0.60 -14.96 3.40 -169.98 -0.58 -15.54 16 6 C -0.23 -6.20 10.27 -15.06 -0.15 -6.36 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.49 10.09 55.49 0.56 -26.93 16 10 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.15 3.62 5.28 -2.47 -0.01 3.61 16 15 C 0.13 2.45 2.61 -65.78 -0.17 2.28 16 16 H 0.09 1.77 7.53 -51.93 -0.39 1.37 16 17 N -0.70 -12.52 4.58 -52.70 -0.24 -12.76 16 18 C 0.55 10.89 7.79 -12.37 -0.10 10.79 16 19 O -0.51 -11.91 15.88 5.32 0.08 -11.83 16 20 C -0.02 -0.35 5.93 -104.45 -0.62 -0.97 16 21 C -0.15 -1.93 9.60 -39.02 -0.37 -2.31 16 22 C 0.13 1.52 11.14 -17.56 -0.20 1.32 16 23 N -0.47 -6.27 10.35 -12.30 -0.13 -6.40 16 24 C 0.23 3.23 8.46 -155.64 -1.32 1.91 16 25 N -0.59 -5.84 6.23 -13.21 -0.08 -5.92 16 26 H 0.43 2.51 8.96 -40.82 -0.37 2.15 16 27 C 0.27 2.85 12.97 -89.68 -1.16 1.69 16 28 N -0.46 -7.62 10.63 -11.88 -0.13 -7.74 16 29 C 0.05 0.90 6.85 -84.61 -0.58 0.32 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.62 6.42 -51.93 -0.33 0.29 16 33 H 0.06 1.11 7.57 -51.93 -0.39 0.72 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.02 0.39 7.76 -51.93 -0.40 -0.01 16 37 H 0.02 0.46 7.84 -51.93 -0.41 0.06 16 38 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.02 0.56 7.80 -51.93 -0.41 0.16 16 40 H 0.11 3.29 5.88 -51.93 -0.31 2.98 16 41 H 0.39 6.15 5.17 -40.82 -0.21 5.94 16 42 H 0.15 1.51 6.53 -52.49 -0.34 1.17 16 43 H 0.17 1.25 8.06 -52.48 -0.42 0.82 16 44 H 0.23 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -37.92 358.41 -10.08 -48.01 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.64 Total: 6.17 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -4.31 Total: 10.19 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -0.59 Total: -75.29 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.92 -10.08 -48.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974631679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.371 kcal (2) G-P(sol) polarization free energy of solvation -37.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds