Wall clock time and date at job start Tue Mar 31 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 110.78351 * 2 1 4 4 C 1.54324 * 110.72194 * 236.75661 * 2 1 3 5 5 N 1.47025 * 107.27542 * 219.44420 * 4 2 1 6 6 C 1.36928 * 125.65067 * 178.97527 * 5 4 2 7 7 H 1.08001 * 120.00088 * 349.95945 * 6 5 4 8 8 C 1.38817 * 120.00112 * 169.95943 * 6 5 4 9 9 N 1.31614 * 119.99666 * 350.40957 * 8 6 5 10 10 Si 1.86794 * 120.00171 * 170.41469 * 8 6 5 11 11 H 1.48497 * 109.47335 * 94.13619 * 10 8 6 12 12 H 1.48498 * 109.47495 * 214.13883 * 10 8 6 13 13 H 1.48502 * 109.47201 * 334.13813 * 10 8 6 14 14 C 1.47532 * 108.70961 * 358.94661 * 5 4 2 15 15 C 1.54899 * 104.78752 * 24.11463 * 14 5 4 16 16 H 1.08997 * 111.00946 * 204.90441 * 15 14 5 17 17 N 1.46503 * 111.00498 * 81.09240 * 15 14 5 18 18 C 1.34775 * 120.00516 * 89.57781 * 17 15 14 19 19 O 1.21686 * 119.99254 * 0.02562 * 18 17 15 20 20 C 1.46811 * 120.00321 * 180.02562 * 18 17 15 21 21 C 1.40416 * 126.54149 * 0.03108 * 20 18 17 22 22 N 1.30969 * 108.76368 * 179.72230 * 21 20 18 23 23 N 1.39712 * 109.48569 * 0.40521 * 22 21 20 24 24 C 1.36357 * 133.18529 * 179.87145 * 23 22 21 25 25 C 1.35294 * 119.80831 * 179.68786 * 24 23 22 26 26 N 1.33250 * 121.26753 * 0.02562 * 25 24 23 27 27 C 1.31402 * 121.08021 * 359.97438 * 26 25 24 28 28 C 1.36812 * 107.97211 * 359.59064 * 23 22 21 29 29 H 1.08997 * 109.47382 * 296.76489 * 1 2 3 30 30 H 1.09004 * 109.46925 * 56.76109 * 1 2 3 31 31 H 1.09000 * 109.47345 * 176.76311 * 1 2 3 32 32 H 1.08997 * 109.47192 * 183.24198 * 3 2 1 33 33 H 1.09009 * 109.46441 * 303.23704 * 3 2 1 34 34 H 1.08997 * 109.47313 * 63.23487 * 3 2 1 35 35 H 1.09000 * 109.88069 * 338.86669 * 4 2 1 36 36 H 1.09000 * 109.88522 * 99.87159 * 4 2 1 37 37 H 0.97005 * 120.00040 * 180.02562 * 9 8 6 38 38 H 1.09002 * 110.36420 * 265.29955 * 14 5 4 39 39 H 1.09001 * 110.40559 * 142.95436 * 14 5 4 40 40 H 0.97003 * 119.99712 * 269.58654 * 17 15 14 41 41 H 1.08000 * 125.61412 * 0.02562 * 21 20 18 42 42 H 1.08008 * 120.09500 * 359.67134 * 24 23 22 43 43 H 1.07997 * 119.36503 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.17948 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2445 -1.5508 -0.7389 6 6 4.0042 -2.3970 -1.5016 7 1 3.6723 -2.6778 -2.4903 8 6 5.2010 -2.8941 -1.0041 9 7 5.7001 -2.4111 0.1139 10 14 6.1033 -4.2483 -1.9213 11 1 7.1173 -3.6448 -2.8229 12 1 6.7776 -5.1424 -0.9462 13 1 5.1323 -5.0342 -2.7242 14 6 3.4635 -1.2498 0.6887 15 6 2.0789 -0.7954 1.2138 16 1 2.1842 -0.1519 2.0872 17 7 1.2270 -1.9487 1.5146 18 6 1.2504 -2.5016 2.7435 19 8 1.9788 -2.0425 3.6034 20 6 0.3971 -3.6577 3.0447 21 6 -0.4896 -4.2949 2.1619 22 7 -1.0681 -5.2882 2.7897 23 7 -0.6000 -5.3440 4.1049 24 6 -0.8726 -6.1656 5.1584 25 6 -0.2426 -5.9752 6.3405 26 7 0.6453 -4.9947 6.5008 27 6 0.9400 -4.1783 5.5143 28 6 0.3123 -4.3380 4.2713 29 1 -0.3634 0.4628 0.9175 30 1 -0.3633 0.5633 -0.8596 31 1 -0.3634 -1.0260 -0.0580 32 1 3.1610 1.4061 -0.0581 33 1 1.6750 1.9700 -0.8597 34 1 1.7691 1.9344 0.9175 35 1 1.3129 -1.4759 -1.5775 36 1 2.3715 -0.1027 -1.9988 37 1 6.5366 -2.7582 0.4615 38 1 4.1933 -0.4478 0.7996 39 1 3.7961 -2.1424 1.2186 40 1 0.6462 -2.3145 0.8292 41 1 -0.6622 -4.0153 1.1331 42 1 -1.5896 -6.9660 5.0495 43 1 -0.4643 -6.6299 7.1702 44 1 1.6617 -3.3882 5.6605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974694402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:19 Heat of formation + Delta-G solvation = 113.282421 kcal Electronic energy + Delta-G solvation = -28537.572498 eV Core-core repulsion = 24686.091339 eV Total energy + Delta-G solvation = -3851.481158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.64640 -39.64659 -38.52682 -37.64389 -33.85963 -33.74815 -33.00701 -31.50285 -30.71752 -29.69789 -27.99779 -26.78370 -25.61314 -25.01029 -24.28253 -23.05535 -22.56382 -20.58043 -19.83137 -18.92487 -18.34334 -17.56399 -16.79344 -16.61601 -16.26782 -15.88363 -15.48779 -15.19091 -14.68839 -14.20599 -14.01429 -13.87122 -13.69991 -13.52236 -13.22562 -13.18344 -13.10395 -12.66559 -12.12637 -11.91668 -11.74466 -11.39410 -11.33515 -11.26766 -11.04400 -10.86191 -10.76628 -10.39197 -10.21304 -10.18941 -10.03345 -9.97682 -9.88683 -9.69052 -9.53334 -8.56941 -8.46012 -8.01506 -6.75884 -5.71032 -3.04107 0.18542 0.61764 1.70393 2.01303 3.07204 3.40547 3.46272 3.48393 3.49137 3.74336 3.95223 3.96770 4.05467 4.51112 4.57543 4.71493 4.86798 4.98454 5.13774 5.19993 5.25025 5.28825 5.43403 5.53022 5.64526 5.80012 5.89386 5.93361 6.00703 6.03951 6.12753 6.20235 6.23109 6.26724 6.42476 6.52584 6.61436 6.72367 6.75527 6.99967 7.05740 7.36473 7.55817 7.59390 7.82824 8.00875 8.29605 8.68720 9.21461 9.84246 10.51194 11.41191 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011318 B = 0.004049 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.392388 B = 6912.797038 C = 8164.516035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.143 3.857 5 N -0.600 5.600 6 C -0.231 4.231 7 H 0.074 0.926 8 C -0.003 4.003 9 N -0.913 5.913 10 Si 0.906 3.094 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.169 3.831 15 C 0.125 3.875 16 H 0.090 0.910 17 N -0.696 5.696 18 C 0.594 3.406 19 O -0.548 6.548 20 C -0.259 4.259 21 C 0.114 3.886 22 N -0.304 5.304 23 N -0.250 5.250 24 C 0.060 3.940 25 C 0.026 3.974 26 N -0.449 5.449 27 C 0.174 3.826 28 C 0.090 3.910 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.253 0.747 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.394 0.606 41 H 0.204 0.796 42 H 0.180 0.820 43 H 0.185 0.815 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.066 -1.864 8.209 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.326 5.326 6 C -0.360 4.360 7 H 0.092 0.908 8 C -0.201 4.201 9 N -0.560 5.560 10 Si 0.737 3.263 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.043 3.957 15 C 0.020 3.980 16 H 0.108 0.892 17 N -0.346 5.346 18 C 0.381 3.619 19 O -0.427 6.427 20 C -0.277 4.277 21 C -0.064 4.064 22 N -0.128 5.128 23 N -0.018 5.018 24 C -0.068 4.068 25 C -0.116 4.116 26 N -0.160 5.160 27 C -0.005 4.005 28 C -0.033 4.033 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.229 0.771 41 H 0.220 0.780 42 H 0.197 0.803 43 H 0.202 0.798 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.937 -2.675 9.475 18.733 hybrid contribution 0.411 -0.578 -1.758 1.896 sum -15.526 -3.253 7.717 17.641 Atomic orbital electron populations 1.21714 0.94621 1.01128 1.01357 1.21831 0.94812 0.95814 0.96291 1.21692 1.02074 0.94007 1.00873 1.21409 0.90429 0.92866 0.93626 1.44459 1.30989 1.50453 1.06701 1.18953 0.99807 1.18874 0.98352 0.90773 1.24794 0.96900 1.00417 0.97957 1.69942 1.20554 1.43516 1.21947 0.86202 0.79677 0.81837 0.78607 1.21633 1.21714 1.20703 1.21794 0.89291 1.00111 0.84508 1.22555 0.92956 0.86045 0.96448 0.89196 1.45547 1.44221 1.32929 1.11855 1.16751 0.81121 0.81411 0.82636 1.90761 1.41614 1.63335 1.47033 1.19972 1.09506 1.05485 0.92769 1.24236 0.91645 0.90554 0.99993 1.77661 1.25199 1.23886 0.86066 1.46194 1.26126 1.19854 1.09623 1.22611 1.02560 0.96490 0.85169 1.22429 0.95158 0.98110 0.95919 1.68290 1.12935 1.03183 1.31609 1.23410 0.95861 0.96958 0.84278 1.20381 0.93978 0.91520 0.97401 0.92762 0.92698 0.93026 0.91593 0.92721 0.93040 0.96154 0.95830 0.93670 0.94680 0.90724 0.77077 0.77979 0.80273 0.79828 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.07 37.15 0.30 -1.31 16 2 C -0.09 -1.36 0.80 -152.67 -0.12 -1.49 16 3 C -0.13 -1.89 8.41 37.16 0.31 -1.58 16 4 C 0.14 2.76 6.41 -3.06 -0.02 2.74 16 5 N -0.60 -14.63 3.40 -169.99 -0.58 -15.20 16 6 C -0.23 -6.32 10.24 -15.06 -0.15 -6.48 16 7 H 0.07 1.97 7.85 -52.49 -0.41 1.55 16 8 C 0.00 -0.10 5.40 -17.43 -0.09 -0.19 16 9 N -0.91 -27.01 10.68 55.49 0.59 -26.42 16 10 Si 0.91 22.18 29.56 -169.99 -5.03 17.16 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.17 4.02 4.81 -2.47 -0.01 4.01 16 15 C 0.13 2.29 2.61 -65.78 -0.17 2.12 16 16 H 0.09 1.68 7.53 -51.93 -0.39 1.29 16 17 N -0.70 -11.50 4.61 -52.99 -0.24 -11.75 16 18 C 0.59 10.37 7.79 -12.80 -0.10 10.27 16 19 O -0.55 -11.10 15.50 5.20 0.08 -11.02 16 20 C -0.26 -3.90 6.16 -104.75 -0.65 -4.55 16 21 C 0.11 1.47 11.44 -17.10 -0.20 1.27 16 22 N -0.30 -4.08 12.60 30.76 0.39 -3.70 16 23 N -0.25 -3.21 3.91 -10.50 -0.04 -3.25 16 24 C 0.06 0.55 11.24 -16.59 -0.19 0.36 16 25 C 0.03 0.22 11.07 -17.99 -0.20 0.02 16 26 N -0.45 -5.31 10.44 -13.26 -0.14 -5.45 16 27 C 0.17 2.32 10.98 -17.01 -0.19 2.13 16 28 C 0.09 1.29 6.77 -84.06 -0.57 0.72 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.59 6.42 -51.93 -0.33 0.26 16 32 H 0.07 1.12 7.57 -51.93 -0.39 0.73 16 33 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 36 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.04 0.92 7.73 -51.93 -0.40 0.52 16 39 H 0.07 2.08 6.94 -51.93 -0.36 1.72 16 40 H 0.39 5.67 5.95 -40.82 -0.24 5.43 16 41 H 0.20 1.92 7.46 -52.49 -0.39 1.52 16 42 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.20 2.63 7.21 -52.48 -0.38 2.25 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -34.38 361.48 -7.35 -41.73 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.79 Total: 4.39 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -2.04 Total: 8.06 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -0.02 Total: -65.77 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.38 -7.35 -41.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974694402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.013 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds