Wall clock time and date at job start Tue Mar 31 2020 05:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.78050 * 2 1 4 4 C 1.54323 * 110.72116 * 123.24262 * 2 1 3 5 5 N 1.47023 * 107.27169 * 140.55476 * 4 2 1 6 6 C 1.36935 * 125.64752 * 180.79461 * 5 4 2 7 7 H 1.08000 * 120.00139 * 161.78531 * 6 5 4 8 8 C 1.38817 * 120.00195 * 341.78154 * 6 5 4 9 9 N 1.31617 * 120.00384 * 156.24057 * 8 6 5 10 10 Si 1.86799 * 119.99830 * 336.24381 * 8 6 5 11 11 H 1.48502 * 109.47661 * 84.66381 * 10 8 6 12 12 H 1.48497 * 109.47222 * 204.66995 * 10 8 6 13 13 H 1.48506 * 109.47141 * 324.66938 * 10 8 6 14 14 C 1.47420 * 108.70186 * 1.05448 * 5 4 2 15 15 C 1.54901 * 104.83542 * 335.87495 * 14 5 4 16 16 H 1.09004 * 111.04268 * 155.09981 * 15 14 5 17 17 N 1.46508 * 111.00490 * 278.93509 * 15 14 5 18 18 C 1.34773 * 119.99888 * 267.19504 * 17 15 14 19 19 O 1.21577 * 119.99900 * 0.02562 * 18 17 15 20 20 C 1.47684 * 120.00098 * 179.97438 * 18 17 15 21 21 C 1.40180 * 120.40787 * 359.72205 * 20 18 17 22 22 N 1.31193 * 121.37388 * 179.72455 * 21 20 18 23 23 C 1.32922 * 121.84495 * 0.58874 * 22 21 20 24 24 N 1.36633 * 133.27137 * 179.71110 * 23 22 21 25 25 H 0.97000 * 125.33918 * 359.97438 * 24 23 22 26 26 N 1.39802 * 109.32271 * 179.97438 * 24 23 22 27 27 C 1.30207 * 110.12914 * 359.97438 * 26 24 23 28 28 C 1.41075 * 120.20230 * 359.67937 * 23 22 21 29 29 C 1.39509 * 120.41190 * 180.02562 * 20 18 17 30 30 H 1.09002 * 109.46688 * 298.21489 * 1 2 3 31 31 H 1.08996 * 109.47628 * 58.21026 * 1 2 3 32 32 H 1.09000 * 109.47593 * 178.22131 * 1 2 3 33 33 H 1.09004 * 109.46885 * 181.79218 * 3 2 1 34 34 H 1.09002 * 109.47358 * 301.78584 * 3 2 1 35 35 H 1.08998 * 109.47683 * 61.79015 * 3 2 1 36 36 H 1.08995 * 109.88201 * 21.13465 * 4 2 1 37 37 H 1.09002 * 109.87897 * 259.96733 * 4 2 1 38 38 H 0.96997 * 120.00231 * 180.02562 * 9 8 6 39 39 H 1.09002 * 110.36266 * 94.71681 * 14 5 4 40 40 H 1.09001 * 110.36513 * 217.02914 * 14 5 4 41 41 H 0.96998 * 119.99989 * 87.19037 * 17 15 14 42 42 H 1.07998 * 119.31537 * 359.97438 * 21 20 18 43 43 H 1.07998 * 126.20676 * 180.02562 * 27 26 24 44 44 H 1.08001 * 121.02173 * 359.94649 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0760 -0.7913 1.2072 5 7 3.2445 -1.5508 0.7389 6 6 4.0069 -2.3936 1.5027 7 1 4.6475 -3.1220 1.0277 8 6 3.9565 -2.3119 2.8876 9 7 4.2821 -3.3554 3.6207 10 14 3.4264 -0.7210 3.7106 11 1 1.9442 -0.6741 3.7890 12 1 3.9968 -0.6583 5.0802 13 1 3.9168 0.4343 2.9168 14 6 3.4631 -1.2498 -0.6876 15 6 2.0789 -0.7955 -1.2138 16 1 2.1842 -0.1520 -2.0873 17 7 1.2269 -1.9488 -1.5145 18 6 1.2023 -2.4618 -2.7605 19 8 1.8874 -1.9677 -3.6349 20 6 0.3439 -3.6247 -3.0635 21 6 -0.4442 -4.2054 -2.0601 22 7 -1.2175 -5.2355 -2.3095 23 6 -1.2846 -5.7860 -3.5175 24 7 -1.9872 -6.8406 -4.0284 25 1 -2.6037 -7.3986 -3.5291 26 7 -1.6782 -6.9891 -5.3838 27 6 -0.8186 -6.0820 -5.7494 28 6 -0.5176 -5.2625 -4.5795 29 6 0.3122 -4.1629 -4.3502 30 1 -0.3633 0.4859 0.9056 31 1 -0.3634 0.5413 -0.8734 32 1 -0.3634 -1.0271 -0.0319 33 1 3.1621 1.4057 -0.0321 34 1 1.6956 1.9622 -0.8735 35 1 1.7476 1.9426 0.9055 36 1 1.3130 -1.4758 1.5775 37 1 2.3742 -0.1024 1.9976 38 1 4.2466 -3.2984 4.5883 39 1 4.1931 -0.4480 -0.7985 40 1 3.7959 -2.1427 -1.2170 41 1 0.6807 -2.3433 -0.8167 42 1 -0.4173 -3.7939 -1.0620 43 1 -0.4034 -5.9585 -6.7387 44 1 0.9103 -3.7416 -5.1447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974733925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:30 Heat of formation + Delta-G solvation = 101.343826 kcal Electronic energy + Delta-G solvation = -28219.064374 eV Core-core repulsion = 24367.065519 eV Total energy + Delta-G solvation = -3851.998855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.90326 -40.17884 -38.68148 -37.65466 -34.09305 -33.45019 -33.23975 -31.45354 -30.98975 -30.55800 -28.41464 -27.02501 -25.96386 -24.65102 -24.15797 -23.16489 -22.19083 -20.95492 -20.18567 -19.21848 -18.70409 -17.89703 -17.14956 -16.65663 -16.22227 -15.75901 -15.65236 -15.17005 -14.78566 -14.60291 -14.14591 -14.05997 -13.73302 -13.62361 -13.33455 -13.25619 -13.05707 -12.80236 -12.66154 -12.28914 -12.09944 -11.64198 -11.57734 -11.52191 -11.21004 -11.04456 -10.87843 -10.78366 -10.51459 -10.29534 -10.21476 -9.80701 -9.62724 -9.44720 -9.34518 -8.99242 -8.76784 -8.53801 -7.06853 -5.96778 -3.25598 0.43214 0.57377 2.01202 2.06352 2.81401 3.19122 3.31715 3.45911 3.49135 3.64988 3.90233 4.02368 4.23029 4.52494 4.53143 4.60596 4.69178 4.86738 4.92897 4.99903 5.09157 5.13059 5.31194 5.41046 5.52932 5.61726 5.71959 5.77070 5.78144 5.87179 5.93960 6.04276 6.08927 6.15488 6.20471 6.34870 6.34976 6.50700 6.58773 6.68754 6.71177 6.83588 6.93792 7.53922 7.61070 7.70916 8.28930 8.29463 8.82046 9.67255 10.15197 11.19643 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.003306 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.645743 B = 8467.457388 C = 9193.767161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.132 4.132 4 C 0.126 3.874 5 N -0.606 5.606 6 C -0.240 4.240 7 H 0.092 0.908 8 C 0.023 3.977 9 N -0.906 5.906 10 Si 0.885 3.115 11 H -0.287 1.287 12 H -0.305 1.305 13 H -0.278 1.278 14 C 0.124 3.876 15 C 0.140 3.860 16 H 0.100 0.900 17 N -0.700 5.700 18 C 0.571 3.429 19 O -0.543 6.543 20 C -0.226 4.226 21 C 0.210 3.790 22 N -0.505 5.505 23 C 0.331 3.669 24 N -0.492 5.492 25 H 0.446 0.554 26 N -0.239 5.239 27 C 0.100 3.900 28 C -0.239 4.239 29 C 0.072 3.928 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.035 0.965 40 H 0.053 0.947 41 H 0.401 0.599 42 H 0.170 0.830 43 H 0.206 0.794 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.147 0.904 -15.891 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.089 4.089 3 C -0.190 4.190 4 C 0.001 3.999 5 N -0.333 5.333 6 C -0.367 4.367 7 H 0.109 0.891 8 C -0.176 4.176 9 N -0.550 5.550 10 Si 0.717 3.283 11 H -0.214 1.214 12 H -0.234 1.234 13 H -0.205 1.205 14 C -0.003 4.003 15 C 0.035 3.965 16 H 0.118 0.882 17 N -0.350 5.350 18 C 0.358 3.642 19 O -0.422 6.422 20 C -0.233 4.233 21 C 0.040 3.960 22 N -0.219 5.219 23 C 0.090 3.910 24 N -0.210 5.210 25 H 0.291 0.709 26 N -0.052 5.052 27 C -0.099 4.099 28 C -0.249 4.249 29 C 0.043 3.957 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.237 0.763 42 H 0.187 0.813 43 H 0.223 0.777 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.827 -0.330 -16.050 21.187 hybrid contribution 0.193 1.314 1.110 1.731 sum -13.633 0.984 -14.941 20.250 Atomic orbital electron populations 1.21728 0.93923 1.01578 1.01797 1.21879 0.95596 0.95830 0.95565 1.21731 1.01811 0.93973 1.01468 1.21803 0.90345 0.93704 0.94021 1.44766 1.29773 1.52276 1.06495 1.18636 1.21246 1.09007 0.87846 0.89061 1.24957 0.99572 0.97221 0.95853 1.69855 1.52020 1.27749 1.05356 0.86934 0.77575 0.86158 0.77604 1.21409 1.23383 1.20515 1.22026 0.93269 0.98659 0.86322 1.22209 0.91005 0.86285 0.97051 0.88164 1.45757 1.45849 1.32883 1.10508 1.17721 0.81410 0.82417 0.82673 1.90765 1.43524 1.61409 1.46468 1.20718 1.05099 1.01822 0.95668 1.22941 0.86663 0.87708 0.98708 1.66731 1.23586 1.12549 1.19032 1.19209 0.91640 0.89683 0.90421 1.45830 1.40769 1.27439 1.06928 0.70860 1.76727 1.16150 1.21319 0.90968 1.25170 0.94715 0.91171 0.98884 1.20475 1.06332 1.02744 0.95392 1.21169 0.89980 0.88577 0.95961 0.92303 0.92415 0.92701 0.91781 0.92573 0.92365 0.94222 0.95285 0.92734 0.94696 0.92859 0.76274 0.81293 0.77723 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.16 37.16 0.30 -1.30 16 2 C -0.09 -1.32 0.80 -152.68 -0.12 -1.44 16 3 C -0.13 -1.83 8.44 37.16 0.31 -1.51 16 4 C 0.13 2.53 4.36 -3.06 -0.01 2.52 16 5 N -0.61 -13.86 3.21 -170.08 -0.55 -14.41 16 6 C -0.24 -6.63 10.56 -15.06 -0.16 -6.79 16 7 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 8 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 9 N -0.91 -27.55 13.97 55.49 0.78 -26.78 16 10 Si 0.89 22.24 24.40 -169.99 -4.15 18.09 16 11 H -0.29 -6.88 6.83 56.52 0.39 -6.50 16 12 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 13 H -0.28 -6.88 6.89 56.52 0.39 -6.49 16 14 C 0.12 2.39 6.61 -2.54 -0.02 2.37 16 15 C 0.14 2.17 2.67 -65.78 -0.18 1.99 16 16 H 0.10 1.50 7.44 -51.93 -0.39 1.12 16 17 N -0.70 -9.84 4.47 -52.72 -0.24 -10.08 16 18 C 0.57 8.16 7.77 -12.40 -0.10 8.06 16 19 O -0.54 -9.15 16.04 5.30 0.08 -9.06 16 20 C -0.23 -2.75 5.89 -104.84 -0.62 -3.37 16 21 C 0.21 2.46 10.69 -17.10 -0.18 2.27 16 22 N -0.50 -6.29 10.37 -12.03 -0.12 -6.42 16 23 C 0.33 3.88 8.47 -156.09 -1.32 2.55 16 24 N -0.49 -4.87 7.33 31.15 0.23 -4.64 16 25 H 0.45 3.32 8.96 -182.82 -1.64 1.68 16 26 N -0.24 -2.32 12.54 31.87 0.40 -1.92 16 27 C 0.10 0.82 12.30 -15.14 -0.19 0.64 16 28 C -0.24 -2.52 6.36 -105.20 -0.67 -3.19 16 29 C 0.07 0.78 9.76 -38.58 -0.38 0.40 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.62 6.34 -51.93 -0.33 0.29 16 33 H 0.06 0.97 7.44 -51.93 -0.39 0.58 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.82 7.82 -51.93 -0.41 0.41 16 37 H 0.03 0.65 3.21 -51.93 -0.17 0.49 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.04 0.67 7.71 -51.93 -0.40 0.27 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.40 5.17 5.17 -40.82 -0.21 4.96 16 42 H 0.17 1.67 6.39 -52.49 -0.34 1.34 16 43 H 0.21 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.16 1.46 7.72 -52.49 -0.41 1.05 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -34.30 354.76 -8.42 -42.72 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.79 Total: 3.39 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -3.42 Total: 3.76 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: 0.50 Total: -64.24 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.15 Total: 18.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.30 -8.42 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974733925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.062 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds