Wall clock time and date at job start Tue Mar 31 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 110.91322 * 2 1 4 4 C 1.55384 * 111.19196 * 235.94234 * 2 1 3 5 5 N 1.47423 * 104.87323 * 204.98039 * 4 2 1 6 6 C 1.36944 * 125.64437 * 204.16488 * 5 4 2 7 7 H 1.08000 * 120.00356 * 354.83507 * 6 5 4 8 8 C 1.38808 * 119.99729 * 174.83354 * 6 5 4 9 9 N 1.31625 * 120.00248 * 7.06749 * 8 6 5 10 10 Si 1.86800 * 120.00078 * 187.06509 * 8 6 5 11 11 H 1.48497 * 109.47196 * 94.98661 * 10 8 6 12 12 H 1.48503 * 109.47269 * 214.99238 * 10 8 6 13 13 H 1.48499 * 109.46897 * 334.98582 * 10 8 6 14 14 C 1.47019 * 108.70891 * 24.12894 * 5 4 2 15 15 C 1.54327 * 107.26752 * 358.94242 * 14 5 4 16 16 H 1.09003 * 110.72287 * 219.26603 * 15 14 5 17 17 N 1.46500 * 110.72036 * 96.17120 * 15 14 5 18 18 C 1.34776 * 120.00118 * 88.84075 * 17 15 14 19 19 O 1.21573 * 119.99778 * 0.02562 * 18 17 15 20 20 C 1.47688 * 119.99677 * 179.97438 * 18 17 15 21 21 C 1.40181 * 120.41652 * 0.02562 * 20 18 17 22 22 N 1.31185 * 121.37726 * 179.97438 * 21 20 18 23 23 C 1.32927 * 121.84441 * 359.65125 * 22 21 20 24 24 N 1.36631 * 133.26531 * 179.61413 * 23 22 21 25 25 H 0.97003 * 125.34305 * 0.77404 * 24 23 22 26 26 N 1.39798 * 109.31887 * 180.50184 * 24 23 22 27 27 C 1.30204 * 110.13222 * 0.27206 * 26 24 23 28 28 C 1.41066 * 120.20279 * 0.63445 * 23 22 21 29 29 C 1.39511 * 120.40436 * 179.97438 * 20 18 17 30 30 H 1.08995 * 109.47432 * 296.09301 * 1 2 3 31 31 H 1.09000 * 109.47397 * 56.10473 * 1 2 3 32 32 H 1.09010 * 109.46999 * 176.10155 * 1 2 3 33 33 H 1.08998 * 109.47054 * 183.90336 * 3 2 1 34 34 H 1.09004 * 109.46839 * 303.89953 * 3 2 1 35 35 H 1.09000 * 109.47282 * 63.89740 * 3 2 1 36 36 H 1.08997 * 110.34488 * 86.12322 * 4 2 1 37 37 H 1.09011 * 110.44278 * 323.87734 * 4 2 1 38 38 H 0.97000 * 119.99975 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.88456 * 239.52786 * 14 5 4 40 40 H 1.08997 * 109.88173 * 118.35650 * 14 5 4 41 41 H 0.97008 * 119.99771 * 268.84543 * 17 15 14 42 42 H 1.08001 * 119.30827 * 359.97438 * 21 20 18 43 43 H 1.08003 * 126.20662 * 180.02562 * 27 26 24 44 44 H 1.07999 * 121.02659 * 0.05071 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0917 -0.8113 -1.2003 5 7 3.4327 -1.2460 -0.7688 6 6 4.4725 -1.5692 -1.5993 7 1 4.3214 -1.5966 -2.6683 8 6 5.7207 -1.8616 -1.0670 9 7 5.8727 -1.9650 0.2363 10 14 7.1848 -2.1086 -2.2005 11 1 7.9316 -0.8316 -2.3299 12 1 8.0793 -3.1500 -1.6341 13 1 6.7075 -2.5406 -3.5387 14 6 3.4692 -1.2741 0.7007 15 6 2.0862 -0.8078 1.2023 16 1 2.1892 -0.1705 2.0806 17 7 1.2269 -1.9574 1.4963 18 6 1.2429 -2.5142 2.7235 19 8 1.9700 -2.0623 3.5867 20 6 0.3761 -3.6727 3.0200 21 6 -0.4660 -4.2005 2.0314 22 7 -1.2431 -5.2291 2.2739 23 6 -1.2670 -5.8254 3.4617 24 7 -1.9714 -6.8825 3.9649 25 1 -2.6174 -7.4121 3.4717 26 7 -1.6105 -7.0852 5.3002 27 6 -0.7206 -6.2064 5.6622 28 6 -0.4530 -5.3498 4.5110 29 6 0.3862 -4.2561 4.2872 30 1 -0.3634 0.4520 0.9229 31 1 -0.3634 0.5731 -0.8530 32 1 -0.3633 -1.0254 -0.0699 33 1 3.1635 1.4026 -0.0700 34 1 1.6704 1.9732 -0.8530 35 1 1.7835 1.9300 0.9228 36 1 2.1643 -0.1785 -2.0847 37 1 1.4601 -1.6761 -1.4042 38 1 6.7450 -2.1690 0.6082 39 1 4.2429 -0.5984 1.0653 40 1 3.6666 -2.2885 1.0472 41 1 0.6465 -2.3178 0.8076 42 1 -0.4752 -3.7507 1.0495 43 1 -0.2630 -6.1262 6.6373 44 1 1.0233 -3.8738 5.0710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974733930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:34 Heat of formation + Delta-G solvation = 94.956874 kcal Electronic energy + Delta-G solvation = -28111.855351 eV Core-core repulsion = 24259.579537 eV Total energy + Delta-G solvation = -3852.275814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85196 -39.93739 -38.43899 -37.46713 -33.94509 -33.38592 -33.09907 -30.94271 -30.74783 -30.45653 -28.01886 -26.82484 -25.63533 -24.48021 -24.09330 -23.08255 -22.14349 -20.74332 -19.99829 -18.92429 -18.63067 -17.68013 -16.78953 -16.66682 -16.09145 -15.67890 -15.41640 -14.81770 -14.60206 -14.26481 -14.07597 -13.91150 -13.71268 -13.56148 -13.27958 -13.25699 -12.80441 -12.54623 -12.08371 -11.98541 -11.68407 -11.52329 -11.37583 -11.09379 -11.03101 -10.94504 -10.78490 -10.42208 -10.27565 -10.08408 -10.00978 -9.87891 -9.65543 -9.48599 -9.40218 -8.79868 -8.60324 -8.44575 -6.82115 -5.69979 -3.03535 0.47754 0.65206 2.04849 2.10511 2.95222 3.37335 3.41177 3.46236 3.48590 3.76761 3.93737 4.08059 4.28687 4.50617 4.60128 4.68250 4.90103 5.02538 5.05701 5.26085 5.28595 5.38024 5.53775 5.62405 5.78625 5.81772 5.83791 5.91036 6.01187 6.13744 6.16058 6.19138 6.23548 6.38103 6.56916 6.59762 6.66745 6.69559 6.72259 6.93684 6.97720 7.56514 7.57658 7.62027 7.79974 7.88802 8.26110 8.50987 9.22265 9.83246 10.48705 11.40973 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014169 B = 0.003237 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.674298 B = 8646.789750 C = 9582.982682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.916 5.916 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.174 3.826 15 C 0.125 3.875 16 H 0.090 0.910 17 N -0.704 5.704 18 C 0.567 3.433 19 O -0.536 6.536 20 C -0.221 4.221 21 C 0.207 3.793 22 N -0.507 5.507 23 C 0.329 3.671 24 N -0.493 5.493 25 H 0.445 0.555 26 N -0.240 5.240 27 C 0.101 3.899 28 C -0.238 4.238 29 C 0.071 3.929 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.015 0.985 38 H 0.253 0.747 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.393 0.607 42 H 0.169 0.831 43 H 0.206 0.794 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.577 -2.872 7.172 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.184 4.184 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.562 5.562 10 Si 0.739 3.261 11 H -0.216 1.216 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.049 3.951 15 C 0.020 3.980 16 H 0.108 0.892 17 N -0.354 5.354 18 C 0.353 3.647 19 O -0.413 6.413 20 C -0.229 4.229 21 C 0.037 3.963 22 N -0.221 5.221 23 C 0.088 3.912 24 N -0.211 5.211 25 H 0.290 0.710 26 N -0.053 5.053 27 C -0.099 4.099 28 C -0.248 4.248 29 C 0.042 3.958 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.229 0.771 42 H 0.186 0.814 43 H 0.223 0.777 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.105 -4.019 7.568 19.131 hybrid contribution 1.241 0.203 -0.908 1.551 sum -15.864 -3.816 6.660 17.623 Atomic orbital electron populations 1.21678 0.94703 1.01024 1.01486 1.22099 0.94399 0.96082 0.96551 1.21595 1.02563 0.93651 1.00545 1.21721 0.87782 0.94467 0.94347 1.44430 1.07835 1.78819 1.01794 1.19013 0.87389 1.40378 0.89127 0.90480 1.24819 0.97566 1.01879 0.95924 1.69974 1.22630 1.54302 1.09340 0.86159 0.82976 0.77378 0.79605 1.21643 1.21853 1.20722 1.21543 0.89645 1.00496 0.83447 1.22529 0.92257 0.85970 0.97223 0.89174 1.45919 1.44124 1.33329 1.12075 1.17698 0.81909 0.82323 0.82792 1.90789 1.41105 1.62973 1.46464 1.20807 1.04130 1.01873 0.96054 1.22891 0.86923 0.88201 0.98311 1.66707 1.24890 1.11311 1.19235 1.19181 0.91644 0.89796 0.90565 1.45805 1.38904 1.27767 1.08623 0.70959 1.76716 1.15312 1.21493 0.91761 1.25177 0.94743 0.91072 0.98891 1.20479 1.05693 1.02735 0.95889 1.21209 0.90507 0.88263 0.95828 0.92746 0.92557 0.93173 0.91144 0.92863 0.93308 0.94025 0.96745 0.93699 0.92584 0.93491 0.77079 0.81441 0.77714 0.82576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.23 37.16 0.31 -1.26 16 2 C -0.09 -1.40 0.84 -152.10 -0.13 -1.53 16 3 C -0.13 -1.92 8.58 37.16 0.32 -1.60 16 4 C 0.14 2.71 6.16 -2.27 -0.01 2.69 16 5 N -0.60 -14.56 3.38 -169.77 -0.57 -15.13 16 6 C -0.23 -6.25 10.27 -15.06 -0.15 -6.41 16 7 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 8 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 9 N -0.92 -26.86 10.36 55.49 0.57 -26.29 16 10 Si 0.91 21.98 29.56 -169.99 -5.02 16.96 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 14 C 0.17 4.13 4.81 -3.06 -0.01 4.12 16 15 C 0.12 2.25 2.54 -66.09 -0.17 2.08 16 16 H 0.09 1.69 7.53 -51.93 -0.39 1.30 16 17 N -0.70 -10.92 4.46 -53.02 -0.24 -11.16 16 18 C 0.57 9.20 7.77 -12.40 -0.10 9.11 16 19 O -0.54 -10.56 16.09 5.30 0.09 -10.47 16 20 C -0.22 -2.93 5.89 -104.83 -0.62 -3.55 16 21 C 0.21 2.46 10.69 -17.10 -0.18 2.27 16 22 N -0.51 -6.32 10.37 -12.03 -0.12 -6.45 16 23 C 0.33 3.95 8.47 -156.09 -1.32 2.62 16 24 N -0.49 -4.98 7.33 31.15 0.23 -4.76 16 25 H 0.44 3.33 8.96 -182.82 -1.64 1.69 16 26 N -0.24 -2.43 12.54 31.87 0.40 -2.03 16 27 C 0.10 0.89 12.30 -15.15 -0.19 0.71 16 28 C -0.24 -2.68 6.36 -105.20 -0.67 -3.35 16 29 C 0.07 0.85 9.76 -38.58 -0.38 0.47 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.54 6.44 -51.92 -0.33 0.20 16 33 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.01 0.27 8.00 -51.92 -0.42 -0.15 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.06 1.51 7.30 -51.93 -0.38 1.13 16 40 H 0.05 1.29 7.51 -51.93 -0.39 0.90 16 41 H 0.39 5.14 5.05 -40.82 -0.21 4.94 16 42 H 0.17 1.59 6.39 -52.49 -0.34 1.25 16 43 H 0.21 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.16 1.70 7.72 -52.49 -0.41 1.30 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -33.92 361.20 -9.61 -43.54 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.98 Total: 4.20 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -3.40 Total: 6.14 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: 0.27 Total: -65.81 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.92 -9.61 -43.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974733930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.495 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds