Wall clock time and date at job start Tue Mar 31 2020 05:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.78285 * 2 1 4 4 C 1.54424 * 110.72064 * 236.70416 * 2 1 3 5 5 N 1.47019 * 107.28281 * 263.84817 * 4 2 1 6 6 C 1.36936 * 125.65069 * 181.10212 * 5 4 2 7 7 H 1.08007 * 119.99943 * 359.97411 * 6 5 4 8 8 C 1.38815 * 120.00360 * 179.97438 * 6 5 4 9 9 N 1.31610 * 119.99693 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00059 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47038 * 60.00331 * 10 8 6 12 12 H 1.48502 * 109.46913 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47163 * 300.00100 * 10 8 6 14 14 C 1.47422 * 108.70302 * 1.05943 * 5 4 2 15 15 C 1.54906 * 104.83155 * 335.87415 * 14 5 4 16 16 H 1.09000 * 111.00256 * 155.11958 * 15 14 5 17 17 N 1.46494 * 111.00387 * 278.93055 * 15 14 5 18 18 C 1.34777 * 120.00431 * 270.41868 * 17 15 14 19 19 O 1.21598 * 119.99459 * 0.02562 * 18 17 15 20 20 C 1.47579 * 120.00619 * 179.97438 * 18 17 15 21 21 C 1.36469 * 125.92170 * 179.97438 * 20 18 17 22 22 N 1.36195 * 107.01490 * 180.02562 * 21 20 18 23 23 C 1.36674 * 132.45010 * 180.28489 * 22 21 20 24 24 C 1.35474 * 119.10450 * 180.12860 * 23 22 21 25 25 C 1.40306 * 119.35393 * 359.56561 * 24 23 22 26 26 N 1.31139 * 120.41520 * 0.21738 * 25 24 23 27 27 C 1.34284 * 120.94473 * 0.02562 * 26 25 24 28 28 N 1.32205 * 131.65573 * 180.02562 * 27 26 25 29 29 H 1.09005 * 109.47220 * 296.76445 * 1 2 3 30 30 H 1.08994 * 109.47293 * 56.75863 * 1 2 3 31 31 H 1.08998 * 109.47570 * 176.76150 * 1 2 3 32 32 H 1.08992 * 109.47431 * 183.24370 * 3 2 1 33 33 H 1.09000 * 109.46912 * 303.24304 * 3 2 1 34 34 H 1.08999 * 109.47106 * 63.23539 * 3 2 1 35 35 H 1.09000 * 109.87462 * 144.42791 * 4 2 1 36 36 H 1.09002 * 110.01045 * 23.34257 * 4 2 1 37 37 H 0.97002 * 120.00433 * 180.02562 * 9 8 6 38 38 H 1.09002 * 110.36710 * 217.03248 * 14 5 4 39 39 H 1.08999 * 110.36167 * 94.71178 * 14 5 4 40 40 H 0.97000 * 119.99782 * 90.41922 * 17 15 14 41 41 H 1.07996 * 126.49517 * 0.02562 * 21 20 18 42 42 H 1.07998 * 120.44585 * 0.02562 * 23 22 21 43 43 H 1.07991 * 120.32112 * 179.79087 * 24 23 22 44 44 H 1.08000 * 119.79110 * 180.20130 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0763 -0.7929 -1.2073 5 7 2.3716 -2.1545 -0.7380 6 6 2.8945 -3.1653 -1.4996 7 1 3.1253 -2.9932 -2.5406 8 6 3.1279 -4.4113 -0.9338 9 7 2.8470 -4.6209 0.3348 10 14 3.8405 -5.7903 -1.9730 11 1 5.1681 -5.3799 -2.4970 12 1 3.9934 -7.0099 -1.1395 13 1 2.9274 -6.0772 -3.1083 14 6 2.0124 -2.2513 0.6885 15 6 2.0789 -0.7955 1.2137 16 1 1.4400 -0.6657 2.0872 17 7 3.4594 -0.4083 1.5144 18 6 3.9682 -0.6263 2.7432 19 8 3.2813 -1.1449 3.6023 20 6 5.3591 -0.2368 3.0460 21 6 5.9937 -0.3999 4.2431 22 7 7.2557 0.0902 4.0951 23 6 8.3166 0.1805 4.9521 24 6 9.4734 0.7322 4.5129 25 6 9.5585 1.1887 3.1889 26 7 8.5281 1.0871 2.3841 27 6 7.3731 0.5472 2.8058 28 7 6.2219 0.3424 2.1888 29 1 -0.3634 0.4628 0.9176 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3634 -1.0260 -0.0581 32 1 3.1610 1.4061 -0.0581 33 1 1.6751 1.9700 -0.8595 34 1 1.7691 1.9343 0.9176 35 1 2.9873 -0.3228 -1.5777 36 1 1.3288 -0.8279 -1.9997 37 1 3.0104 -5.4914 0.7303 38 1 2.7289 -2.8789 1.2184 39 1 1.0036 -2.6489 0.7995 40 1 4.0074 0.0050 0.8289 41 1 5.5746 -0.8352 5.1382 42 1 8.2333 -0.1815 5.9661 43 1 10.3228 0.8165 5.1743 44 1 10.4783 1.6267 2.8304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974772074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:37 Heat of formation + Delta-G solvation = 107.124401 kcal Electronic energy + Delta-G solvation = -28368.481495 eV Core-core repulsion = 24516.733305 eV Total energy + Delta-G solvation = -3851.748190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.18680 -39.64843 -38.47139 -37.45407 -34.84814 -33.73415 -32.92698 -31.28055 -30.61012 -29.53879 -28.10972 -26.83589 -25.56637 -25.31755 -23.72873 -23.37951 -22.57160 -20.43997 -19.70811 -18.87381 -18.35639 -17.80708 -16.92105 -16.62123 -16.54804 -15.96313 -15.65975 -14.69054 -14.60262 -14.32893 -14.15704 -13.88837 -13.67541 -13.58244 -13.33230 -13.09492 -12.65674 -12.54967 -12.16610 -11.95871 -11.82054 -11.66267 -11.20335 -11.07601 -10.92921 -10.76641 -10.69189 -10.33460 -10.16961 -10.10272 -9.88247 -9.75459 -9.61720 -9.59174 -9.36763 -8.60106 -8.43783 -8.23651 -6.72020 -5.54708 -2.96886 0.18320 0.78282 2.02276 2.07775 3.23941 3.24656 3.46352 3.50156 3.51639 3.62205 3.82465 4.02020 4.19361 4.42860 4.56510 4.71871 4.99363 5.07523 5.15398 5.26001 5.31000 5.34783 5.40851 5.61283 5.71608 5.82928 5.89786 5.98843 6.10840 6.15177 6.20257 6.24679 6.28925 6.39596 6.49137 6.58411 6.70008 6.79501 6.85487 7.07343 7.25762 7.53816 7.65526 7.70577 7.95981 8.13766 8.47524 8.70668 9.30680 9.92407 10.56779 11.48180 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011074 B = 0.003917 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.883486 B = 7147.337671 C = 8446.190179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.142 3.858 5 N -0.600 5.600 6 C -0.222 4.222 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.147 3.853 15 C 0.122 3.878 16 H 0.089 0.911 17 N -0.679 5.679 18 C 0.598 3.402 19 O -0.538 6.538 20 C 0.036 3.964 21 C -0.018 4.018 22 N -0.403 5.403 23 C 0.113 3.887 24 C -0.207 4.207 25 C 0.169 3.831 26 N -0.430 5.430 27 C 0.374 3.626 28 N -0.438 5.438 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.252 0.748 38 H 0.113 0.887 39 H 0.022 0.978 40 H 0.407 0.593 41 H 0.201 0.799 42 H 0.177 0.823 43 H 0.165 0.835 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.676 14.270 11.253 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 C -0.190 4.190 4 C 0.016 3.984 5 N -0.326 5.326 6 C -0.351 4.351 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.567 5.567 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.017 3.983 16 H 0.107 0.893 17 N -0.328 5.328 18 C 0.381 3.619 19 O -0.416 6.416 20 C -0.098 4.098 21 C -0.153 4.153 22 N -0.081 5.081 23 C -0.018 4.018 24 C -0.230 4.230 25 C -0.021 4.021 26 N -0.141 5.141 27 C 0.025 3.975 28 N -0.161 5.161 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.131 0.869 39 H 0.040 0.960 40 H 0.243 0.757 41 H 0.218 0.782 42 H 0.194 0.806 43 H 0.183 0.817 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.769 14.068 10.108 19.887 hybrid contribution 0.961 -1.129 0.756 1.664 sum 10.730 12.939 10.864 20.014 Atomic orbital electron populations 1.21681 0.93500 1.02465 1.00864 1.21853 0.95962 0.94645 0.96319 1.21727 1.00787 0.95291 1.01183 1.21437 0.96560 0.86736 0.93624 1.44435 1.74167 1.06704 1.07341 1.18997 1.34005 0.89189 0.92860 0.90620 1.24766 1.01804 0.97604 0.96323 1.69788 1.53820 1.22312 1.10771 0.86198 0.78939 0.81643 0.78987 1.21293 1.21679 1.21257 1.22310 1.00109 0.90303 0.85174 1.22609 0.80877 0.98397 0.96445 0.89339 1.45624 1.14756 1.60405 1.11978 1.16692 0.83238 0.78800 0.83156 1.90794 1.59354 1.44048 1.47366 1.20951 0.95967 1.02462 0.90430 1.22622 0.82778 1.07421 1.02471 1.43899 1.10710 1.39994 1.13475 1.22247 0.85699 0.97359 0.96464 1.21819 0.98432 1.03890 0.98907 1.23349 0.96345 0.93005 0.89360 1.67962 0.96857 1.14489 1.34753 1.21897 0.94666 1.01550 0.79395 1.70836 0.97938 1.18433 1.28884 0.93073 0.92699 0.91731 0.92608 0.92724 0.92889 0.95929 0.95808 0.93759 0.86946 0.96016 0.75669 0.78207 0.80608 0.81712 0.80001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.41 37.16 0.31 -1.70 16 2 C -0.09 -1.54 0.81 -152.62 -0.12 -1.66 16 3 C -0.13 -1.96 8.08 37.16 0.30 -1.66 16 4 C 0.14 3.03 6.41 -3.01 -0.02 3.01 16 5 N -0.60 -15.67 3.39 -170.01 -0.58 -16.25 16 6 C -0.22 -6.37 10.27 -15.06 -0.15 -6.53 16 7 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -27.91 10.09 55.49 0.56 -27.35 16 10 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.15 3.73 5.27 -2.53 -0.01 3.72 16 15 C 0.12 2.49 2.61 -65.79 -0.17 2.32 16 16 H 0.09 1.78 7.53 -51.93 -0.39 1.39 16 17 N -0.68 -13.54 4.62 -52.76 -0.24 -13.78 16 18 C 0.60 12.02 7.82 -12.45 -0.10 11.92 16 19 O -0.54 -11.85 16.56 5.28 0.09 -11.76 16 20 C 0.04 0.64 6.94 -83.43 -0.58 0.06 16 21 C -0.02 -0.26 11.47 -16.25 -0.19 -0.44 16 22 N -0.40 -4.99 2.93 -64.14 -0.19 -5.18 16 23 C 0.11 0.82 11.05 -16.38 -0.18 0.64 16 24 C -0.21 -1.10 10.06 -39.79 -0.40 -1.50 16 25 C 0.17 1.29 11.27 -17.07 -0.19 1.10 16 26 N -0.43 -5.74 10.48 -13.67 -0.14 -5.88 16 27 C 0.37 5.84 8.90 -322.42 -2.87 2.97 16 28 N -0.44 -8.01 11.01 -11.03 -0.12 -8.13 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.14 7.57 -51.93 -0.39 0.74 16 32 H 0.05 0.85 6.42 -51.93 -0.33 0.52 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.48 7.77 -51.93 -0.40 0.08 16 36 H 0.02 0.51 7.85 -51.93 -0.41 0.10 16 37 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.11 3.32 5.87 -51.93 -0.30 3.02 16 39 H 0.02 0.59 7.80 -51.93 -0.41 0.18 16 40 H 0.41 8.00 6.72 -40.82 -0.27 7.73 16 41 H 0.20 2.23 8.06 -52.49 -0.42 1.80 16 42 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.17 0.17 8.06 -52.49 -0.42 -0.25 16 44 H 0.18 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -37.19 363.30 -10.49 -47.68 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.84 Total: 5.36 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -4.47 Total: 11.88 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -0.71 Total: -76.56 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.19 -10.49 -47.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974772074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.808 kcal (2) G-P(sol) polarization free energy of solvation -37.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds