Wall clock time and date at job start Tue Mar 31 2020 05:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 110.78075 * 2 1 4 4 C 1.54319 * 110.72418 * 123.23630 * 2 1 3 5 5 N 1.47027 * 107.27180 * 96.17122 * 4 2 1 6 6 C 1.36932 * 125.64936 * 178.97736 * 5 4 2 7 7 H 1.08005 * 119.99976 * 349.94493 * 6 5 4 8 8 C 1.38816 * 119.99894 * 169.94433 * 6 5 4 9 9 N 1.31614 * 119.99975 * 350.42072 * 8 6 5 10 10 Si 1.86802 * 119.99657 * 170.42264 * 8 6 5 11 11 H 1.48496 * 109.47006 * 94.14331 * 10 8 6 12 12 H 1.48500 * 109.46736 * 214.13984 * 10 8 6 13 13 H 1.48494 * 109.47475 * 334.13794 * 10 8 6 14 14 C 1.47426 * 108.70098 * 358.94276 * 5 4 2 15 15 C 1.54908 * 104.83177 * 24.12894 * 14 5 4 16 16 H 1.09004 * 111.00237 * 204.87878 * 15 14 5 17 17 N 1.46502 * 111.00691 * 81.06153 * 15 14 5 18 18 C 1.34775 * 119.99597 * 86.45055 * 17 15 14 19 19 O 1.21595 * 120.00349 * 0.02562 * 18 17 15 20 20 C 1.47581 * 120.00054 * 180.02562 * 18 17 15 21 21 C 1.36476 * 125.92296 * 179.71831 * 20 18 17 22 22 N 1.36190 * 107.01517 * 179.90378 * 21 20 18 23 23 C 1.36670 * 132.44658 * 180.09326 * 22 21 20 24 24 C 1.35477 * 119.09970 * 180.29753 * 23 22 21 25 25 C 1.40297 * 119.36069 * 359.97438 * 24 23 22 26 26 N 1.31144 * 120.41279 * 359.97023 * 25 24 23 27 27 C 1.34281 * 120.94302 * 0.06915 * 26 25 24 28 28 N 1.32214 * 131.65634 * 179.97438 * 27 26 25 29 29 H 1.09003 * 109.46885 * 298.21210 * 1 2 3 30 30 H 1.08995 * 109.47521 * 58.21298 * 1 2 3 31 31 H 1.09000 * 109.47016 * 178.21677 * 1 2 3 32 32 H 1.08999 * 109.47383 * 181.78587 * 3 2 1 33 33 H 1.09001 * 109.46474 * 301.78804 * 3 2 1 34 34 H 1.09006 * 109.46903 * 61.78203 * 3 2 1 35 35 H 1.09006 * 109.88014 * 336.75529 * 4 2 1 36 36 H 1.09001 * 109.88668 * 215.59287 * 4 2 1 37 37 H 0.96998 * 120.00188 * 180.02562 * 9 8 6 38 38 H 1.09001 * 110.36669 * 142.96708 * 14 5 4 39 39 H 1.08999 * 110.36708 * 265.18354 * 14 5 4 40 40 H 0.96994 * 120.00509 * 266.45405 * 17 15 14 41 41 H 1.08004 * 126.49218 * 0.02562 * 21 20 18 42 42 H 1.07999 * 120.45412 * 0.27010 * 23 22 21 43 43 H 1.07998 * 120.31883 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.79725 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0760 -0.7911 1.2072 5 7 2.3717 -2.1531 0.7390 6 6 2.8934 -3.1636 1.5018 7 1 3.2738 -2.9527 2.4904 8 6 2.9332 -4.4590 1.0044 9 7 2.3046 -4.7542 -0.1136 10 14 3.8791 -5.7830 1.9219 11 1 2.9550 -6.5167 2.8235 12 1 4.4757 -6.7308 0.9468 13 1 4.9585 -5.1540 2.7247 14 6 2.0127 -2.2509 -0.6875 15 6 2.0790 -0.7954 -1.2138 16 1 1.4401 -0.6664 -2.0875 17 7 3.4595 -0.4081 -1.5144 18 6 3.9887 -0.6838 -2.7228 19 8 3.3203 -1.2537 -3.5637 20 6 5.3796 -0.2942 -3.0256 21 6 6.0358 -0.5172 -4.2013 22 7 7.2886 -0.0016 -4.0625 23 6 8.3598 0.0599 -4.9091 24 6 9.5054 0.6427 -4.4810 25 6 9.5656 1.1690 -3.1818 26 7 8.5239 1.0989 -2.3882 27 6 7.3816 0.5237 -2.7974 28 7 6.2231 0.3391 -2.1876 29 1 -0.3633 0.4858 0.9056 30 1 -0.3634 0.5413 -0.8735 31 1 -0.3633 -1.0272 -0.0320 32 1 3.1621 1.4059 -0.0320 33 1 1.6955 1.9622 -0.8736 34 1 1.7474 1.9426 0.9056 35 1 1.3263 -0.8254 1.9977 36 1 2.9868 -0.3205 1.5776 37 1 2.3321 -5.6595 -0.4610 38 1 2.7294 -2.8787 -1.2169 39 1 1.0047 -2.6506 -0.7985 40 1 3.9926 0.0468 -0.8439 41 1 5.6364 -1.0077 -5.0768 42 1 8.2941 -0.3509 -5.9058 43 1 10.3637 0.7024 -5.1337 44 1 10.4752 1.6355 -2.8334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974772078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:40 Heat of formation + Delta-G solvation = 105.555602 kcal Electronic energy + Delta-G solvation = -28330.382643 eV Core-core repulsion = 24478.566424 eV Total energy + Delta-G solvation = -3851.816218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.22092 -39.69862 -38.50258 -37.48847 -34.88040 -33.73806 -32.94717 -31.31335 -30.63944 -29.57200 -28.13103 -26.84579 -25.57716 -25.35188 -23.74958 -23.40602 -22.58889 -20.50615 -19.73793 -18.90764 -18.37617 -17.83873 -16.95584 -16.59540 -16.56680 -16.00028 -15.67577 -14.72476 -14.65220 -14.34209 -14.18476 -13.94151 -13.67669 -13.62002 -13.35825 -13.11330 -12.66537 -12.53659 -12.16210 -11.96107 -11.84278 -11.69285 -11.29071 -11.16603 -10.83674 -10.79125 -10.71116 -10.32093 -10.16426 -10.12043 -9.92401 -9.82332 -9.68741 -9.60382 -9.40229 -8.50774 -8.48033 -8.30576 -6.68925 -5.64799 -2.97089 0.15245 0.75167 1.98290 2.04519 3.20587 3.21137 3.45083 3.50776 3.53196 3.58050 3.77526 3.99372 4.16063 4.39805 4.57178 4.69062 4.95875 5.04992 5.12109 5.23099 5.27829 5.33163 5.38383 5.59481 5.70987 5.79858 5.87253 5.97278 6.07995 6.13578 6.18927 6.21397 6.27010 6.37536 6.47829 6.59738 6.68072 6.78839 6.83414 7.05743 7.22449 7.55696 7.62182 7.66545 7.88379 8.07871 8.35957 8.65517 9.28056 9.90749 10.57986 11.47718 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.003883 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.632227 B = 7208.789945 C = 8486.132998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C -0.133 4.133 4 C 0.142 3.858 5 N -0.599 5.599 6 C -0.227 4.227 7 H 0.075 0.925 8 C -0.006 4.006 9 N -0.915 5.915 10 Si 0.907 3.093 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.169 3.831 15 C 0.121 3.879 16 H 0.089 0.911 17 N -0.681 5.681 18 C 0.597 3.403 19 O -0.537 6.537 20 C 0.035 3.965 21 C -0.018 4.018 22 N -0.403 5.403 23 C 0.113 3.887 24 C -0.207 4.207 25 C 0.169 3.831 26 N -0.430 5.430 27 C 0.374 3.626 28 N -0.438 5.438 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.025 0.975 36 H 0.023 0.977 37 H 0.252 0.748 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.407 0.593 41 H 0.201 0.799 42 H 0.177 0.823 43 H 0.166 0.834 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.805 14.518 -11.666 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.191 4.191 4 C 0.016 3.984 5 N -0.326 5.326 6 C -0.356 4.356 7 H 0.093 0.907 8 C -0.202 4.202 9 N -0.562 5.562 10 Si 0.737 3.263 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.044 3.956 15 C 0.016 3.984 16 H 0.107 0.893 17 N -0.331 5.331 18 C 0.380 3.620 19 O -0.414 6.414 20 C -0.099 4.099 21 C -0.153 4.153 22 N -0.081 5.081 23 C -0.018 4.018 24 C -0.230 4.230 25 C -0.020 4.020 26 N -0.141 5.141 27 C 0.025 3.975 28 N -0.162 5.162 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.244 0.756 41 H 0.218 0.782 42 H 0.194 0.806 43 H 0.183 0.817 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 10.857 14.374 -10.536 20.869 hybrid contribution 1.115 -1.238 -0.831 1.862 sum 11.972 13.136 -11.368 21.098 Atomic orbital electron populations 1.21690 0.93395 1.02581 1.00909 1.21818 0.96062 0.94608 0.96135 1.21744 1.00747 0.95304 1.01293 1.21428 0.96525 0.86823 0.93606 1.44418 1.74623 1.06852 1.06668 1.18980 1.32023 0.86268 0.98299 0.90739 1.24789 1.00520 0.96917 0.98019 1.69944 1.45256 1.18951 1.22041 0.86183 0.79648 0.81842 0.78583 1.21660 1.21767 1.20682 1.21766 0.99841 0.89388 0.84642 1.22622 0.80852 0.98361 0.96571 0.89319 1.45693 1.14924 1.58334 1.14108 1.16711 0.83175 0.79156 0.82944 1.90803 1.60465 1.42350 1.47779 1.20947 0.96028 1.01913 0.91052 1.22630 0.82930 1.06860 1.02831 1.43897 1.10911 1.38621 1.14640 1.22254 0.85445 0.97659 0.96409 1.21825 0.98609 1.03356 0.99217 1.23356 0.96082 0.93177 0.89384 1.67967 0.96962 1.15183 1.33968 1.21899 0.94725 1.00523 0.80329 1.70833 0.98159 1.18612 1.28551 0.92614 0.93102 0.91603 0.92618 0.92851 0.92601 0.95712 0.95896 0.93777 0.90760 0.94540 0.75607 0.78191 0.80582 0.81686 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.44 37.16 0.31 -1.71 16 2 C -0.09 -1.50 0.81 -152.67 -0.12 -1.62 16 3 C -0.13 -1.94 8.16 37.16 0.30 -1.64 16 4 C 0.14 3.02 6.41 -3.06 -0.02 3.00 16 5 N -0.60 -15.65 3.39 -170.07 -0.58 -16.23 16 6 C -0.23 -6.55 10.24 -15.06 -0.15 -6.70 16 7 H 0.07 2.09 7.85 -52.48 -0.41 1.68 16 8 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 9 N -0.91 -27.92 10.68 55.49 0.59 -27.33 16 10 Si 0.91 23.00 29.56 -169.99 -5.03 17.97 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.17 4.29 4.80 -2.53 -0.01 4.28 16 15 C 0.12 2.44 2.56 -65.78 -0.17 2.27 16 16 H 0.09 1.76 7.63 -51.93 -0.40 1.36 16 17 N -0.68 -13.29 4.67 -52.75 -0.25 -13.54 16 18 C 0.60 11.78 7.82 -12.45 -0.10 11.69 16 19 O -0.54 -11.68 16.61 5.28 0.09 -11.60 16 20 C 0.03 0.61 6.94 -83.43 -0.58 0.03 16 21 C -0.02 -0.24 11.47 -16.25 -0.19 -0.43 16 22 N -0.40 -4.87 2.93 -64.13 -0.19 -5.06 16 23 C 0.11 0.79 11.05 -16.38 -0.18 0.61 16 24 C -0.21 -1.05 10.06 -39.79 -0.40 -1.45 16 25 C 0.17 1.25 11.27 -17.07 -0.19 1.06 16 26 N -0.43 -5.60 10.48 -13.67 -0.14 -5.74 16 27 C 0.37 5.71 8.90 -322.42 -2.87 2.84 16 28 N -0.44 -7.83 11.01 -11.03 -0.12 -7.96 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.17 7.45 -51.93 -0.39 0.79 16 32 H 0.05 0.84 6.21 -51.93 -0.32 0.51 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.53 7.84 -51.93 -0.41 0.12 16 36 H 0.02 0.49 7.82 -51.93 -0.41 0.08 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.07 2.18 6.94 -51.93 -0.36 1.82 16 39 H 0.04 1.00 7.65 -51.93 -0.40 0.60 16 40 H 0.41 7.76 6.51 -40.82 -0.27 7.49 16 41 H 0.20 2.18 8.06 -52.48 -0.42 1.75 16 42 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.17 0.13 8.06 -52.49 -0.42 -0.29 16 44 H 0.18 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -37.49 363.99 -10.47 -47.96 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.87 Total: 4.06 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: -4.46 Total: 11.96 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -0.68 Total: -75.85 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.49 -10.47 -47.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974772078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.516 kcal (2) G-P(sol) polarization free energy of solvation -37.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds