Wall clock time and date at job start Tue Mar 31 2020 05:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 110.64046 * 2 1 4 4 C 1.54316 * 110.72327 * 123.14440 * 2 1 3 5 5 N 1.47026 * 107.27365 * 140.55544 * 4 2 1 6 6 C 1.36933 * 125.65326 * 180.79632 * 5 4 2 7 7 H 1.08005 * 119.99541 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00564 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99514 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00305 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47209 * 89.99775 * 10 8 6 12 12 H 1.48501 * 109.47422 * 209.99954 * 10 8 6 13 13 H 1.48504 * 109.47192 * 329.99911 * 10 8 6 14 14 C 1.47425 * 108.70074 * 1.05989 * 5 4 2 15 15 C 1.54910 * 104.83231 * 335.87083 * 14 5 4 16 16 H 1.09004 * 111.03615 * 155.09334 * 15 14 5 17 17 N 1.46500 * 111.00688 * 278.93409 * 15 14 5 18 18 C 1.34776 * 119.99850 * 267.20143 * 17 15 14 19 19 O 1.21448 * 119.99923 * 359.97438 * 18 17 15 20 20 C 1.48632 * 119.99763 * 179.97438 * 18 17 15 21 21 N 1.33506 * 120.60358 * 359.71652 * 20 18 17 22 22 C 1.30811 * 122.65284 * 179.74390 * 21 20 18 23 23 N 1.34054 * 123.38258 * 0.55482 * 22 21 20 24 24 H 0.97002 * 120.21712 * 179.75330 * 23 22 21 25 25 C 1.36871 * 119.57066 * 359.73126 * 23 22 21 26 26 N 1.31639 * 135.95906 * 180.02562 * 25 23 22 27 27 C 1.33524 * 110.83017 * 179.97438 * 26 25 23 28 28 C 1.36074 * 110.92899 * 359.97438 * 27 26 25 29 29 C 1.39538 * 120.60329 * 179.97438 * 20 18 17 30 30 H 1.09003 * 109.47103 * 298.30580 * 1 2 3 31 31 H 1.09000 * 109.47385 * 58.30874 * 1 2 3 32 32 H 1.09004 * 109.47258 * 178.30986 * 1 2 3 33 33 H 1.08998 * 109.46762 * 181.68782 * 3 2 1 34 34 H 1.08993 * 109.47001 * 301.69203 * 3 2 1 35 35 H 1.09008 * 109.46751 * 61.69343 * 3 2 1 36 36 H 1.09004 * 109.88447 * 21.14413 * 4 2 1 37 37 H 1.09000 * 109.88516 * 259.97202 * 4 2 1 38 38 H 0.97002 * 119.99999 * 179.97438 * 9 8 6 39 39 H 1.09001 * 110.36478 * 94.71036 * 14 5 4 40 40 H 1.08998 * 110.36859 * 217.03414 * 14 5 4 41 41 H 0.96995 * 120.00018 * 87.19266 * 17 15 14 42 42 H 1.07998 * 118.31089 * 180.26406 * 22 21 20 43 43 H 1.08005 * 124.53197 * 180.02562 * 27 26 25 44 44 H 1.08003 * 126.71796 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7891 1.2085 5 7 3.2445 -1.5495 0.7415 6 6 4.0070 -2.3910 1.5066 7 1 3.7666 -2.5396 2.5491 8 6 5.0895 -3.0524 0.9429 9 7 5.3827 -2.8709 -0.3273 10 14 6.1300 -4.1998 1.9869 11 1 5.5719 -5.5742 1.9183 12 1 7.5245 -4.2057 1.4764 13 1 6.1208 -3.7317 3.3962 14 6 3.4632 -1.2509 -0.6856 15 6 2.0789 -0.7974 -1.2125 16 1 2.1842 -0.1553 -2.0870 17 7 1.2270 -1.9513 -1.5113 18 6 1.2025 -2.4663 -2.7565 19 8 1.8862 -1.9736 -3.6310 20 6 0.3387 -3.6373 -3.0595 21 7 -0.4135 -4.1918 -2.1060 22 6 -1.1915 -5.2195 -2.3291 23 7 -1.2997 -5.8169 -3.5243 24 1 -1.8889 -6.5792 -3.6375 25 6 -0.5738 -5.3441 -4.5840 26 7 -0.4326 -5.6653 -5.8528 27 6 0.4316 -4.8459 -6.4566 28 6 0.9128 -3.9187 -5.5846 29 6 0.3031 -4.1803 -4.3444 30 1 -0.3633 0.4873 0.9048 31 1 -0.3634 0.5399 -0.8744 32 1 -0.3634 -1.0272 -0.0303 33 1 3.1586 1.4097 -0.0303 34 1 1.6922 1.9621 -0.8744 35 1 1.7413 1.9436 0.9049 36 1 1.3130 -1.4733 1.5799 37 1 2.3741 -0.0991 1.9978 38 1 6.1393 -3.3327 -0.7212 39 1 4.1931 -0.4491 -0.7978 40 1 3.7959 -2.1445 -1.2135 41 1 0.6808 -2.3446 -0.8129 42 1 -1.7732 -5.6095 -1.5071 43 1 0.7106 -4.9099 -7.4980 44 1 1.6242 -3.1357 -5.8021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974779434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:10 Heat of formation + Delta-G solvation = 97.429871 kcal Electronic energy + Delta-G solvation = -28680.062957 eV Core-core repulsion = 24827.894380 eV Total energy + Delta-G solvation = -3852.168577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.92976 -39.68645 -38.71012 -37.92208 -35.09028 -33.83222 -33.01745 -30.70339 -30.51179 -29.15018 -28.20850 -26.94156 -25.65474 -25.35108 -23.65248 -23.24516 -21.40002 -20.69509 -19.95420 -18.91162 -18.49883 -17.92668 -16.94359 -16.72172 -16.23929 -15.87981 -15.72058 -14.83002 -14.61964 -14.18733 -13.95212 -13.75074 -13.67377 -13.19657 -13.16828 -12.94633 -12.69604 -12.33474 -12.21358 -11.92740 -11.77994 -11.61256 -11.28367 -11.16152 -11.00396 -10.78169 -10.67474 -10.40431 -10.20466 -9.98864 -9.84826 -9.79826 -9.68291 -9.52893 -8.69717 -8.66483 -8.39562 -7.90538 -6.80888 -5.62872 -3.05473 -0.30814 1.32502 2.06238 2.78110 3.20916 3.35898 3.39639 3.44536 3.47337 3.69222 3.76786 4.10868 4.46670 4.49098 4.75672 4.90896 4.99141 5.25172 5.29125 5.34421 5.47982 5.53171 5.62675 5.80731 5.89545 5.96298 6.04261 6.10541 6.17486 6.25436 6.28660 6.34883 6.41157 6.50020 6.54069 6.60250 6.69549 6.73777 6.96532 6.97617 7.33127 7.48387 7.62540 7.86025 7.87573 7.98166 8.38448 8.54162 9.22254 9.83983 10.47912 11.40009 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.004227 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.198190 B = 6622.970107 C = 7749.053069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.128 4.128 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.224 4.224 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.917 5.917 10 Si 0.912 3.088 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.146 3.854 15 C 0.119 3.881 16 H 0.091 0.909 17 N -0.674 5.674 18 C 0.562 3.438 19 O -0.517 6.517 20 C 0.208 3.792 21 N -0.514 5.514 22 C 0.351 3.649 23 N -0.521 5.521 24 H 0.426 0.574 25 C 0.250 3.750 26 N -0.520 5.520 27 C 0.054 3.946 28 C -0.189 4.189 29 C -0.155 4.155 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.023 0.977 40 H 0.113 0.887 41 H 0.408 0.592 42 H 0.220 0.780 43 H 0.166 0.834 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.853 -1.339 -3.678 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.352 4.352 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.021 3.979 15 C 0.014 3.986 16 H 0.109 0.891 17 N -0.324 5.324 18 C 0.345 3.655 19 O -0.392 6.392 20 C 0.074 3.926 21 N -0.235 5.235 22 C 0.067 3.933 23 N -0.125 5.125 24 H 0.265 0.735 25 C -0.004 4.004 26 N -0.241 5.241 27 C -0.088 4.088 28 C -0.213 4.213 29 C -0.167 4.167 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.130 0.870 41 H 0.245 0.755 42 H 0.236 0.764 43 H 0.183 0.817 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.472 -1.433 -4.107 17.037 hybrid contribution 0.502 -0.939 0.566 1.206 sum -15.970 -2.371 -3.541 16.529 Atomic orbital electron populations 1.21730 0.94546 1.01460 1.01221 1.21846 0.94948 0.95720 0.96279 1.21689 1.01922 0.94031 1.00944 1.21418 0.90271 0.92995 0.93637 1.44458 1.30593 1.50417 1.07193 1.19025 1.06280 1.17203 0.92706 0.90534 1.24780 0.98769 1.00602 0.96316 1.69790 1.30009 1.46004 1.10751 0.86120 0.79752 0.80730 0.79146 1.21757 1.21684 1.20760 1.22316 0.88983 1.01447 0.85173 1.22648 0.93315 0.85913 0.96701 0.89093 1.45678 1.44555 1.31992 1.10129 1.17677 0.81923 0.82342 0.83603 1.90768 1.41931 1.59873 1.46631 1.21486 0.90248 0.92707 0.88209 1.67879 1.10571 1.11794 1.33238 1.24799 0.93740 0.88955 0.85770 1.41796 1.34979 1.28309 1.07440 0.73528 1.20528 0.95376 0.94613 0.89893 1.69498 1.22470 1.29922 1.02230 1.22629 0.94471 0.92242 0.99491 1.21623 1.04838 1.03726 0.91093 1.20849 1.02339 0.98253 0.95299 0.92705 0.92914 0.92670 0.91742 0.93066 0.92620 0.95923 0.95789 0.93674 0.95908 0.86974 0.75545 0.76382 0.81693 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.15 37.16 0.30 -1.42 16 2 C -0.09 -1.42 0.80 -152.68 -0.12 -1.54 16 3 C -0.13 -1.90 8.44 37.16 0.31 -1.58 16 4 C 0.14 2.80 6.41 -3.07 -0.02 2.78 16 5 N -0.60 -14.78 3.39 -170.07 -0.58 -15.36 16 6 C -0.22 -6.10 10.27 -15.06 -0.15 -6.26 16 7 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.07 10.09 55.49 0.56 -26.51 16 10 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 C 0.15 3.55 5.27 -2.53 -0.01 3.53 16 15 C 0.12 2.28 2.67 -65.78 -0.18 2.11 16 16 H 0.09 1.75 7.44 -51.93 -0.39 1.37 16 17 N -0.67 -12.11 4.51 -52.42 -0.24 -12.35 16 18 C 0.56 10.62 7.84 -11.97 -0.09 10.53 16 19 O -0.52 -11.12 15.06 5.41 0.08 -11.04 16 20 C 0.21 3.38 6.83 -82.36 -0.56 2.82 16 21 N -0.51 -6.48 9.57 -10.67 -0.10 -6.58 16 22 C 0.35 2.69 12.24 -91.01 -1.11 1.57 16 23 N -0.52 -4.30 5.32 -12.02 -0.06 -4.37 16 24 H 0.43 1.74 8.93 -40.82 -0.36 1.38 16 25 C 0.25 3.45 8.72 -154.19 -1.34 2.11 16 26 N -0.52 -7.88 11.16 -10.91 -0.12 -8.00 16 27 C 0.05 0.79 11.70 -17.59 -0.21 0.59 16 28 C -0.19 -3.11 10.25 -39.45 -0.40 -3.51 16 29 C -0.16 -2.55 6.19 -104.65 -0.65 -3.20 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.71 6.34 -51.93 -0.33 0.38 16 33 H 0.06 1.08 7.47 -51.93 -0.39 0.69 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.02 0.44 7.82 -51.93 -0.41 0.03 16 37 H 0.02 0.48 7.84 -51.93 -0.41 0.07 16 38 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.02 0.60 7.73 -51.93 -0.40 0.20 16 40 H 0.11 3.19 5.87 -51.93 -0.30 2.88 16 41 H 0.41 6.83 6.52 -40.82 -0.27 6.56 16 42 H 0.22 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.17 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.15 2.58 7.38 -52.48 -0.39 2.19 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -36.26 359.40 -10.13 -46.39 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.72 Total: 7.12 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -4.34 Total: 8.19 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -0.54 Total: -73.16 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.26 -10.13 -46.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974779434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.817 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds