Wall clock time and date at job start Tue Mar 31 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 110.91639 * 2 1 4 4 C 1.55393 * 111.19106 * 235.94100 * 2 1 3 5 5 N 1.47422 * 104.87543 * 204.98103 * 4 2 1 6 6 C 1.36939 * 125.64700 * 204.16851 * 5 4 2 7 7 H 1.07996 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99835 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00084 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99948 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46794 * 89.99911 * 10 8 6 12 12 H 1.48494 * 109.46965 * 209.99804 * 10 8 6 13 13 H 1.48500 * 109.46936 * 329.99790 * 10 8 6 14 14 C 1.47020 * 108.70529 * 24.13023 * 5 4 2 15 15 C 1.54326 * 107.27072 * 358.94076 * 14 5 4 16 16 H 1.08990 * 110.72255 * 219.26424 * 15 14 5 17 17 N 1.46497 * 110.71908 * 96.16950 * 15 14 5 18 18 C 1.34773 * 120.00404 * 88.84363 * 17 15 14 19 19 O 1.21459 * 119.99678 * 0.02562 * 18 17 15 20 20 C 1.48638 * 120.00634 * 180.02562 * 18 17 15 21 21 N 1.33509 * 120.59705 * 0.02562 * 20 18 17 22 22 C 1.30814 * 122.65013 * 180.02562 * 21 20 18 23 23 N 1.34056 * 123.38094 * 359.97438 * 22 21 20 24 24 H 0.97003 * 120.21345 * 180.02562 * 23 22 21 25 25 C 1.36869 * 119.57282 * 359.97438 * 23 22 21 26 26 N 1.31639 * 135.96461 * 180.02562 * 25 23 22 27 27 C 1.33525 * 110.83584 * 179.97438 * 26 25 23 28 28 C 1.36077 * 110.92892 * 359.75104 * 27 26 25 29 29 C 1.39541 * 120.60510 * 180.02562 * 20 18 17 30 30 H 1.08997 * 109.47333 * 296.09797 * 1 2 3 31 31 H 1.09006 * 109.46961 * 56.09905 * 1 2 3 32 32 H 1.08996 * 109.46993 * 176.09802 * 1 2 3 33 33 H 1.08999 * 109.46940 * 183.90021 * 3 2 1 34 34 H 1.08996 * 109.46782 * 303.90279 * 3 2 1 35 35 H 1.08996 * 109.47040 * 63.90418 * 3 2 1 36 36 H 1.09002 * 110.34253 * 86.12670 * 4 2 1 37 37 H 1.08999 * 110.44026 * 323.88591 * 4 2 1 38 38 H 0.97003 * 119.99955 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.88831 * 239.52723 * 14 5 4 40 40 H 1.08999 * 109.88327 * 118.35448 * 14 5 4 41 41 H 0.97008 * 120.00020 * 268.84285 * 17 15 14 42 42 H 1.08000 * 118.30862 * 179.97438 * 22 21 20 43 43 H 1.08001 * 124.53394 * 179.97438 * 27 26 25 44 44 H 1.07993 * 126.71965 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0917 -0.8114 -1.2003 5 7 3.4327 -1.2461 -0.7689 6 6 4.4725 -1.5693 -1.5993 7 1 4.3447 -1.5162 -2.6704 8 6 5.6906 -1.9653 -1.0644 9 7 5.8465 -2.0296 0.2410 10 14 7.1088 -2.4069 -2.1973 11 1 7.9115 -1.1906 -2.4827 12 1 7.9683 -3.4244 -1.5408 13 1 6.5739 -2.9568 -3.4688 14 6 3.4691 -1.2742 0.7006 15 6 2.0862 -0.8079 1.2022 16 1 2.1892 -0.1707 2.0804 17 7 1.2269 -1.9574 1.4962 18 6 1.2427 -2.5143 2.7234 19 8 1.9692 -2.0629 3.5858 20 6 0.3713 -3.6809 3.0215 21 7 -0.4314 -4.1871 2.0825 22 6 -1.2147 -5.2118 2.3010 23 7 -1.2861 -5.8476 3.4790 24 1 -1.8835 -6.6037 3.5902 25 6 -0.5099 -5.4237 4.5235 26 7 -0.3234 -5.7907 5.7739 27 6 0.5796 -5.0076 6.3691 28 6 1.0468 -4.0631 5.5080 29 6 0.3773 -4.2670 4.2879 30 1 -0.3634 0.4521 0.9228 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0252 -0.0699 33 1 3.1636 1.4026 -0.0699 34 1 1.6705 1.9732 -0.8529 35 1 1.7837 1.9300 0.9229 36 1 2.1643 -0.1785 -2.0848 37 1 1.4600 -1.6760 -1.4043 38 1 6.6979 -2.3060 0.6147 39 1 4.2428 -0.5985 1.0653 40 1 3.6664 -2.2886 1.0472 41 1 0.6464 -2.3177 0.8075 42 1 -1.8359 -5.5637 1.4906 43 1 0.8993 -5.1122 7.3954 44 1 1.7819 -3.3015 5.7219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974779445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:13 Heat of formation + Delta-G solvation = 96.779502 kcal Electronic energy + Delta-G solvation = -28490.045028 eV Core-core repulsion = 24637.848250 eV Total energy + Delta-G solvation = -3852.196779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99918 -39.74388 -38.77442 -37.92761 -35.16249 -33.87921 -32.97853 -30.69731 -30.57746 -29.21126 -28.17721 -26.92191 -25.65827 -25.41689 -23.71872 -23.29064 -21.43710 -20.72118 -19.99153 -18.96769 -18.57270 -17.98322 -16.99617 -16.68763 -16.28198 -15.94242 -15.72696 -14.83224 -14.69915 -14.22004 -13.99660 -13.86801 -13.67706 -13.25994 -13.20361 -13.00780 -12.53923 -12.39096 -12.13411 -11.96777 -11.69810 -11.65005 -11.37470 -11.06230 -10.97964 -10.78497 -10.75110 -10.39757 -10.25883 -10.00254 -9.89919 -9.86012 -9.64565 -9.58544 -8.74197 -8.62711 -8.48019 -7.96783 -6.81030 -5.67395 -3.02168 -0.37771 1.25017 1.99623 2.70662 3.12624 3.30159 3.41620 3.46226 3.48964 3.61642 3.68460 4.03776 4.39552 4.51638 4.68564 4.84201 4.93641 5.24331 5.29012 5.32914 5.41713 5.55627 5.63884 5.80548 5.90793 5.93610 6.03616 6.16347 6.19106 6.19468 6.25533 6.30384 6.38831 6.47500 6.58076 6.62805 6.67422 6.71002 6.91556 6.94717 7.25945 7.56690 7.63953 7.81372 7.81797 7.90790 8.27193 8.45479 9.23726 9.84598 10.49887 11.43381 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.003671 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.502424 B = 7625.434619 C = 8505.160277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.176 3.824 15 C 0.120 3.880 16 H 0.091 0.909 17 N -0.683 5.683 18 C 0.561 3.439 19 O -0.512 6.512 20 C 0.206 3.794 21 N -0.516 5.516 22 C 0.350 3.650 23 N -0.521 5.521 24 H 0.427 0.573 25 C 0.250 3.750 26 N -0.519 5.519 27 C 0.055 3.945 28 C -0.189 4.189 29 C -0.154 4.154 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.017 0.983 38 H 0.253 0.747 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.406 0.594 42 H 0.221 0.779 43 H 0.167 0.833 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.623 -3.718 3.855 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.051 3.949 15 C 0.016 3.984 16 H 0.109 0.891 17 N -0.334 5.334 18 C 0.343 3.657 19 O -0.386 6.386 20 C 0.071 3.929 21 N -0.237 5.237 22 C 0.067 3.933 23 N -0.125 5.125 24 H 0.265 0.735 25 C -0.004 4.004 26 N -0.240 5.240 27 C -0.087 4.087 28 C -0.213 4.213 29 C -0.167 4.167 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.243 0.757 42 H 0.237 0.763 43 H 0.184 0.816 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.188 -3.775 4.302 19.067 hybrid contribution 0.696 -0.678 -0.511 1.098 sum -17.491 -4.453 3.792 18.443 Atomic orbital electron populations 1.21679 0.94620 1.01302 1.01340 1.22098 0.94506 0.96010 0.96436 1.21597 1.02543 0.93637 1.00566 1.21718 0.87745 0.94540 0.94247 1.44423 1.07640 1.79060 1.01766 1.19019 0.89293 1.38578 0.88933 0.90454 1.24804 0.97816 1.01755 0.95920 1.69955 1.24258 1.53304 1.09045 0.86152 0.82491 0.77816 0.79474 1.21612 1.21761 1.20781 1.21525 0.89390 1.00530 0.83485 1.22617 0.92433 0.85975 0.97392 0.89140 1.45898 1.43174 1.32340 1.11986 1.17718 0.82249 0.82232 0.83476 1.90793 1.39730 1.61498 1.46608 1.21483 0.90328 0.92800 0.88264 1.67873 1.09984 1.12857 1.32978 1.24793 0.94339 0.88206 0.85942 1.41793 1.33351 1.28578 1.08756 0.73474 1.20531 0.94649 0.94887 0.90312 1.69507 1.21455 1.30204 1.02849 1.22653 0.94025 0.92481 0.99516 1.21643 1.04343 1.03683 0.91612 1.20864 1.01891 0.98240 0.95688 0.92893 0.92591 0.92813 0.91151 0.92823 0.93302 0.94071 0.96557 0.93667 0.92621 0.93379 0.75697 0.76343 0.81615 0.82768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.23 37.16 0.31 -1.37 16 2 C -0.09 -1.45 0.84 -152.09 -0.13 -1.58 16 3 C -0.13 -1.96 8.58 37.16 0.32 -1.65 16 4 C 0.14 2.80 6.16 -2.27 -0.01 2.79 16 5 N -0.60 -14.90 3.38 -169.77 -0.57 -15.47 16 6 C -0.23 -6.31 10.28 -15.06 -0.15 -6.47 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.41 10.31 55.49 0.57 -26.84 16 10 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.18 4.30 4.80 -3.06 -0.01 4.29 16 15 C 0.12 2.28 2.54 -66.10 -0.17 2.11 16 16 H 0.09 1.76 7.52 -51.93 -0.39 1.37 16 17 N -0.68 -11.69 4.50 -52.72 -0.24 -11.93 16 18 C 0.56 10.18 7.84 -11.97 -0.09 10.09 16 19 O -0.51 -10.81 15.10 5.40 0.08 -10.73 16 20 C 0.21 3.16 6.83 -82.36 -0.56 2.60 16 21 N -0.52 -5.95 9.58 -10.67 -0.10 -6.05 16 22 C 0.35 2.35 12.24 -91.00 -1.11 1.23 16 23 N -0.52 -3.89 5.32 -12.02 -0.06 -3.95 16 24 H 0.43 1.43 8.93 -40.82 -0.36 1.07 16 25 C 0.25 3.28 8.72 -154.19 -1.34 1.94 16 26 N -0.52 -7.56 11.16 -10.91 -0.12 -7.68 16 27 C 0.06 0.79 11.70 -17.59 -0.21 0.58 16 28 C -0.19 -3.01 10.25 -39.45 -0.40 -3.41 16 29 C -0.15 -2.43 6.19 -104.65 -0.65 -3.08 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.64 6.44 -51.93 -0.33 0.31 16 33 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 37 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.06 1.53 7.38 -51.93 -0.38 1.15 16 40 H 0.05 1.36 7.41 -51.93 -0.38 0.98 16 41 H 0.41 6.24 6.41 -40.82 -0.26 5.97 16 42 H 0.22 0.13 8.06 -52.49 -0.42 -0.29 16 43 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.15 2.53 7.38 -52.49 -0.39 2.14 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -36.79 361.17 -10.18 -46.97 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.83 Total: 5.25 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -4.32 Total: 7.80 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -0.53 Total: -71.92 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.79 -10.18 -46.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974779445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.748 kcal (2) G-P(sol) polarization free energy of solvation -36.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds