Wall clock time and date at job start Tue Mar 31 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52989 * 110.88738 * 2 1 4 4 C 1.54908 * 111.00616 * 123.88761 * 2 1 3 5 5 N 1.47424 * 104.83372 * 155.08215 * 4 2 1 6 6 C 1.36931 * 125.64688 * 155.83567 * 5 4 2 7 7 H 1.07999 * 120.00648 * 353.84747 * 6 5 4 8 8 C 1.38820 * 119.99861 * 173.85191 * 6 5 4 9 9 N 1.31617 * 120.00063 * 6.80959 * 8 6 5 10 10 Si 1.86797 * 119.99816 * 186.80643 * 8 6 5 11 11 H 1.48497 * 109.46995 * 94.98900 * 10 8 6 12 12 H 1.48503 * 109.47192 * 214.98409 * 10 8 6 13 13 H 1.48500 * 109.47374 * 334.98352 * 10 8 6 14 14 C 1.47023 * 108.70185 * 335.86548 * 5 4 2 15 15 C 1.54324 * 107.27255 * 1.06173 * 14 5 4 16 16 H 1.08998 * 110.71828 * 140.54965 * 15 14 5 17 17 N 1.46500 * 110.71954 * 263.82916 * 15 14 5 18 18 C 1.34776 * 119.99869 * 268.51899 * 17 15 14 19 19 O 1.21627 * 119.99936 * 0.02562 * 18 17 15 20 20 C 1.47212 * 120.00139 * 180.02562 * 18 17 15 21 21 C 1.37748 * 119.93698 * 180.02562 * 20 18 17 22 22 C 1.39862 * 119.92653 * 179.97438 * 21 20 18 23 23 C 1.36303 * 119.82231 * 0.02562 * 22 21 20 24 24 C 1.40772 * 119.70581 * 359.97438 * 23 22 21 25 25 N 1.32819 * 132.74010 * 180.02562 * 24 23 22 26 26 C 1.32373 * 109.74209 * 180.02562 * 25 24 23 27 27 N 1.31393 * 109.61896 * 359.97438 * 26 25 24 28 28 N 1.36549 * 119.87873 * 359.73360 * 24 23 22 29 29 H 1.08997 * 109.46662 * 297.56763 * 1 2 3 30 30 H 1.09006 * 109.46862 * 177.57340 * 1 2 3 31 31 H 1.08996 * 109.47396 * 57.56926 * 1 2 3 32 32 H 1.09002 * 109.47116 * 59.30295 * 3 2 1 33 33 H 1.08997 * 109.47332 * 179.30303 * 3 2 1 34 34 H 1.09004 * 109.47361 * 299.30245 * 3 2 1 35 35 H 1.09003 * 110.36268 * 273.92149 * 4 2 1 36 36 H 1.09001 * 110.36996 * 36.23772 * 4 2 1 37 37 H 0.96995 * 119.99944 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.88079 * 120.47962 * 14 5 4 39 39 H 1.08993 * 109.88163 * 241.64281 * 14 5 4 40 40 H 0.96993 * 120.00146 * 88.52739 * 17 15 14 41 41 H 1.07999 * 120.04009 * 359.97438 * 21 20 18 42 42 H 1.08004 * 120.09190 * 180.02562 * 22 21 20 43 43 H 1.07996 * 120.14637 * 180.02562 * 23 22 21 44 44 H 1.08008 * 125.19157 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0853 -0.8063 1.2005 5 7 3.4272 -1.2429 0.7736 6 6 4.4644 -1.5649 1.6075 7 1 4.3679 -1.4145 2.6726 8 6 5.6403 -2.0847 1.0838 9 7 5.8107 -2.1433 -0.2200 10 14 6.9808 -2.7009 2.2296 11 1 6.8343 -4.1663 2.4198 12 1 8.3110 -2.4092 1.6373 13 1 6.8628 -2.0170 3.5425 14 6 3.4674 -1.2745 -0.6957 15 6 2.0861 -0.8084 -1.2021 16 1 2.1921 -0.1707 -2.0796 17 7 1.2267 -1.9580 -1.4956 18 6 1.2059 -2.4844 -2.7361 19 8 1.9010 -2.0054 -3.6117 20 6 0.3420 -3.6393 -3.0312 21 6 0.3222 -4.1766 -4.2994 22 6 -0.4983 -5.2741 -4.5795 23 6 -1.2761 -5.8076 -3.5954 24 6 -1.2468 -5.2494 -2.3034 25 7 -1.8802 -5.5525 -1.1760 26 6 -1.5096 -4.7187 -0.2169 27 7 -0.6343 -3.8614 -0.6915 28 7 -0.4368 -4.1817 -2.0419 29 1 -0.3632 0.4756 0.9110 30 1 -0.3633 -1.0268 -0.0435 31 1 -0.3634 0.5511 -0.8673 32 1 1.7149 1.9559 0.8837 33 1 3.1651 1.4025 0.0125 34 1 1.7351 1.9482 -0.8962 35 1 2.1561 -0.1714 2.0837 36 1 1.4519 -1.6700 1.4030 37 1 6.6325 -2.5062 -0.5858 38 1 4.2426 -0.6002 -1.0599 39 1 3.6649 -2.2898 -1.0394 40 1 0.6726 -2.3402 -0.7972 41 1 0.9395 -3.7509 -5.0767 42 1 -0.5157 -5.6978 -5.5728 43 1 -1.9113 -6.6553 -3.8058 44 1 -1.8709 -4.7404 0.8007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974783136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:14 Heat of formation + Delta-G solvation = 123.057783 kcal Electronic energy + Delta-G solvation = -29078.699978 eV Core-core repulsion = 25227.642711 eV Total energy + Delta-G solvation = -3851.057267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.89796 -39.94379 -38.43391 -37.35746 -34.28193 -33.67889 -32.83246 -31.16575 -30.69606 -30.17959 -28.18989 -26.87009 -25.63220 -25.03901 -23.67094 -23.52276 -22.49241 -20.74883 -20.06538 -18.75397 -18.22273 -17.60916 -16.79730 -16.68941 -16.47332 -15.98653 -15.72671 -14.82962 -14.52530 -14.37023 -14.16588 -13.86502 -13.77285 -13.26542 -13.16538 -12.91163 -12.58115 -12.36569 -12.04356 -11.99018 -11.86491 -11.66442 -11.43353 -11.38938 -11.07478 -10.98577 -10.78227 -10.51267 -10.31980 -10.25290 -10.01611 -9.88815 -9.85662 -9.81822 -9.63557 -8.67499 -8.58637 -8.41371 -6.81055 -5.70080 -3.03187 0.02491 0.69476 1.75739 2.28506 2.89558 3.16591 3.37502 3.40914 3.45983 3.48208 3.70953 3.93682 4.50225 4.51250 4.58659 4.62093 4.94847 4.95334 5.13496 5.29095 5.34574 5.46838 5.52804 5.64425 5.66449 5.82081 5.88309 5.93681 5.96854 6.04011 6.15087 6.17592 6.18329 6.28488 6.37204 6.39559 6.57587 6.64536 6.66054 6.70816 6.94741 7.50286 7.63257 7.68217 7.80127 7.87295 8.25395 8.38575 9.22319 9.83392 10.49700 11.41548 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.004161 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.523850 B = 6728.074313 C = 7210.940165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.176 3.824 15 C 0.118 3.882 16 H 0.092 0.908 17 N -0.687 5.687 18 C 0.553 3.447 19 O -0.524 6.524 20 C 0.100 3.900 21 C -0.087 4.087 22 C -0.067 4.067 23 C -0.088 4.088 24 C 0.277 3.723 25 N -0.543 5.543 26 C 0.246 3.754 27 N -0.344 5.344 28 N -0.273 5.273 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.018 0.982 37 H 0.252 0.748 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.414 0.586 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.909 -3.190 -7.593 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C -0.183 4.183 4 C 0.017 3.983 5 N -0.328 5.328 6 C -0.357 4.357 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.740 3.260 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.051 3.949 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.341 5.341 18 C 0.336 3.664 19 O -0.402 6.402 20 C -0.011 4.011 21 C -0.111 4.111 22 C -0.093 4.093 23 C -0.109 4.109 24 C 0.024 3.976 25 N -0.273 5.273 26 C -0.054 4.054 27 N -0.176 5.176 28 N -0.050 5.050 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.257 0.743 41 H 0.193 0.807 42 H 0.177 0.823 43 H 0.179 0.821 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -16.130 -2.593 -7.511 17.981 hybrid contribution 0.578 -0.738 0.864 1.274 sum -15.552 -3.331 -6.648 17.239 Atomic orbital electron populations 1.21707 0.94711 1.01509 1.01225 1.22012 0.94542 0.96008 0.96452 1.21596 1.02456 0.93607 1.00605 1.21635 0.87718 0.94688 0.94224 1.44414 1.07450 1.79295 1.01678 1.19041 0.91937 1.35292 0.89451 0.90396 1.24823 0.98226 1.01284 0.95946 1.69966 1.26422 1.50682 1.09460 0.86143 0.81378 0.78822 0.79705 1.21757 1.21769 1.20615 1.21519 0.89289 1.00469 0.83645 1.22608 0.92478 0.86043 0.97501 0.89004 1.46368 1.44319 1.32442 1.10993 1.17453 0.82273 0.82541 0.84141 1.90852 1.42116 1.60940 1.46253 1.20847 0.95297 0.97604 0.87365 1.21521 0.99408 0.95947 0.94193 1.21279 0.93360 0.94267 1.00368 1.20500 1.01479 1.01447 0.87515 1.21850 0.90902 0.88604 0.96273 1.70839 1.29413 1.29391 0.97680 1.26180 0.91049 0.87827 1.00307 1.78093 1.26064 1.27064 0.86362 1.47900 1.27320 1.21521 1.08307 0.92548 0.92651 0.93068 0.92740 0.91185 0.93334 0.94017 0.96479 0.93712 0.92916 0.93225 0.74284 0.80732 0.82298 0.82119 0.75455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.35 37.16 0.31 -1.63 16 2 C -0.09 -1.56 0.83 -152.36 -0.13 -1.68 16 3 C -0.13 -2.04 8.59 37.15 0.32 -1.72 16 4 C 0.14 2.98 6.12 -2.53 -0.02 2.97 16 5 N -0.60 -15.41 3.38 -170.07 -0.58 -15.99 16 6 C -0.23 -6.43 10.26 -15.06 -0.15 -6.59 16 7 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 8 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 9 N -0.92 -27.64 10.36 55.49 0.58 -27.06 16 10 Si 0.91 22.50 29.56 -169.99 -5.02 17.48 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.18 4.43 4.77 -3.06 -0.01 4.42 16 15 C 0.12 2.37 2.59 -66.09 -0.17 2.20 16 16 H 0.09 1.84 7.46 -51.93 -0.39 1.46 16 17 N -0.69 -12.88 4.40 -53.17 -0.23 -13.12 16 18 C 0.55 10.06 7.78 -12.62 -0.10 9.97 16 19 O -0.52 -10.58 15.93 5.25 0.08 -10.49 16 20 C 0.10 1.48 6.80 -82.05 -0.56 0.92 16 21 C -0.09 -0.93 9.58 -39.15 -0.38 -1.30 16 22 C -0.07 -0.49 10.04 -39.67 -0.40 -0.89 16 23 C -0.09 -0.77 10.09 -39.32 -0.40 -1.17 16 24 C 0.28 3.58 7.88 -156.38 -1.23 2.35 16 25 N -0.54 -7.31 11.24 -13.99 -0.16 -7.46 16 26 C 0.25 3.13 12.98 -92.00 -1.19 1.93 16 27 N -0.34 -5.23 9.99 29.25 0.29 -4.94 16 28 N -0.27 -4.05 3.93 -8.82 -0.03 -4.08 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.83 6.27 -51.93 -0.33 0.50 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.32 7.86 -51.93 -0.41 0.92 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 36 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.05 1.47 7.55 -51.93 -0.39 1.08 16 39 H 0.05 1.44 7.27 -51.93 -0.38 1.06 16 40 H 0.41 7.53 3.99 -40.82 -0.16 7.37 16 41 H 0.18 1.64 7.59 -52.49 -0.40 1.24 16 42 H 0.16 0.51 8.06 -52.48 -0.42 0.08 16 43 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.23 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -35.07 359.22 -9.66 -44.73 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.79 Total: 6.03 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: -4.20 Total: 9.50 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -0.13 Total: -72.65 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.07 -9.66 -44.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974783136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.783 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds