Wall clock time and date at job start Tue Mar 31 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.78206 * 2 1 4 4 C 1.54325 * 110.72125 * 123.24470 * 2 1 3 5 5 N 1.47018 * 107.40412 * 96.24436 * 4 2 1 6 6 C 1.36936 * 125.64899 * 178.89496 * 5 4 2 7 7 H 1.07997 * 119.99931 * 0.02562 * 6 5 4 8 8 C 1.38819 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99956 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47048 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46969 * 120.00174 * 10 8 6 13 13 H 1.48497 * 109.47276 * 240.00208 * 10 8 6 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09000 * 111.00165 * 204.88167 * 15 14 5 17 17 N 1.46495 * 111.00127 * 81.07022 * 15 14 5 18 18 C 1.34779 * 120.00474 * 86.45568 * 17 15 14 19 19 O 1.21622 * 119.99840 * 359.97438 * 18 17 15 20 20 C 1.47203 * 120.00061 * 179.97438 * 18 17 15 21 21 C 1.37752 * 119.93708 * 179.72728 * 20 18 17 22 22 C 1.39866 * 119.92940 * 179.72977 * 21 20 18 23 23 C 1.36296 * 119.81582 * 0.53887 * 22 21 20 24 24 C 1.40777 * 119.71417 * 359.73029 * 23 22 21 25 25 N 1.32809 * 132.74382 * 180.02562 * 24 23 22 26 26 C 1.32370 * 109.74405 * 179.97438 * 25 24 23 27 27 N 1.31386 * 109.61607 * 0.02562 * 26 25 24 28 28 N 1.36556 * 119.87305 * 0.02562 * 24 23 22 29 29 H 1.08999 * 109.47052 * 298.21250 * 1 2 3 30 30 H 1.08993 * 109.46847 * 58.21225 * 1 2 3 31 31 H 1.09005 * 109.46970 * 178.21340 * 1 2 3 32 32 H 1.08999 * 109.47083 * 181.78701 * 3 2 1 33 33 H 1.09002 * 109.47293 * 301.78710 * 3 2 1 34 34 H 1.09000 * 109.47062 * 61.78805 * 3 2 1 35 35 H 1.09002 * 109.88192 * 336.74876 * 4 2 1 36 36 H 1.09000 * 109.88128 * 215.73728 * 4 2 1 37 37 H 0.96998 * 120.00119 * 179.97438 * 9 8 6 38 38 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 39 39 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 40 40 H 0.97004 * 120.00040 * 266.44542 * 17 15 14 41 41 H 1.08001 * 120.03585 * 359.96789 * 21 20 18 42 42 H 1.07997 * 120.08995 * 180.29011 * 22 21 20 43 43 H 1.08005 * 120.14365 * 179.75271 * 23 22 21 44 44 H 1.08004 * 125.19076 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7913 1.2072 5 7 2.3744 -2.1535 0.7415 6 6 2.8980 -3.1616 1.5062 7 1 3.1271 -2.9866 2.5470 8 6 3.1334 -4.4087 0.9438 9 7 2.8538 -4.6221 -0.3245 10 14 3.8471 -5.7841 1.9871 11 1 4.0703 -5.2914 3.3701 12 1 2.8987 -6.9265 2.0161 13 1 5.1390 -6.2279 1.4047 14 6 2.0157 -2.2547 -0.6849 15 6 2.0792 -0.8000 -1.2138 16 1 1.4401 -0.6739 -2.0878 17 7 3.4589 -0.4107 -1.5152 18 6 3.9889 -0.6875 -2.7231 19 8 3.3217 -1.2611 -3.5628 20 6 5.3751 -0.2958 -3.0260 21 6 5.9173 -0.5844 -4.2590 22 6 7.2326 -0.2070 -4.5486 23 6 7.9767 0.4356 -3.6047 24 6 7.4131 0.7198 -2.3463 25 7 7.8881 1.3193 -1.2606 26 6 6.9569 1.3444 -0.3201 27 7 5.8640 0.7672 -0.7660 28 7 6.1261 0.3503 -2.0784 29 1 -0.3633 0.4858 0.9056 30 1 -0.3633 0.5413 -0.8735 31 1 -0.3633 -1.0272 -0.0320 32 1 3.1621 1.4056 -0.0320 33 1 1.6957 1.9622 -0.8735 34 1 1.7476 1.9425 0.9056 35 1 1.3264 -0.8256 1.9977 36 1 2.9854 -0.3193 1.5792 37 1 3.0186 -5.4934 -0.7176 38 1 2.7337 -2.8821 -1.2130 39 1 1.0085 -2.6566 -0.7952 40 1 3.9912 0.0466 -0.8454 41 1 5.3261 -1.0981 -5.0026 42 1 7.6587 -0.4279 -5.5161 43 1 8.9942 0.7258 -3.8213 44 1 7.0774 1.7732 0.6638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974783138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:18 Heat of formation + Delta-G solvation = 124.110318 kcal Electronic energy + Delta-G solvation = -29322.649653 eV Core-core repulsion = 25471.638028 eV Total energy + Delta-G solvation = -3851.011626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.81259 -39.84611 -38.38332 -37.27422 -34.18317 -33.67502 -32.80631 -31.08226 -30.69148 -30.09307 -28.20839 -26.89082 -25.61367 -24.95509 -23.58890 -23.46786 -22.44119 -20.74678 -19.96288 -18.71426 -18.12158 -17.51980 -16.74890 -16.69060 -16.38686 -15.95532 -15.67834 -14.76723 -14.50024 -14.28732 -14.11397 -13.78550 -13.73180 -13.19618 -13.08886 -12.83603 -12.72888 -12.33957 -12.09794 -11.94056 -11.86245 -11.66565 -11.36772 -11.27838 -11.14818 -11.01316 -10.79128 -10.46556 -10.29269 -10.16864 -9.97984 -9.83771 -9.73453 -9.70442 -9.68899 -8.69076 -8.53937 -8.32550 -6.79854 -5.62481 -3.04622 0.11579 0.78047 1.84588 2.37640 2.98367 3.26401 3.39703 3.44949 3.47580 3.49507 3.78822 4.02473 4.49420 4.58959 4.66945 4.70108 4.97177 5.03623 5.21258 5.25903 5.32063 5.53489 5.54646 5.63273 5.73942 5.80016 5.89324 5.96530 6.04199 6.05360 6.09544 6.17558 6.25012 6.30910 6.38508 6.47119 6.50623 6.60986 6.69580 6.75532 6.96915 7.45479 7.63443 7.75762 7.86489 7.97185 8.38707 8.50323 9.22987 9.84512 10.48784 11.40654 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010475 B = 0.004967 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.460499 B = 5635.489687 C = 6483.801002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.134 4.134 4 C 0.143 3.857 5 N -0.600 5.600 6 C -0.221 4.221 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.292 1.292 14 C 0.147 3.853 15 C 0.119 3.881 16 H 0.087 0.913 17 N -0.680 5.680 18 C 0.554 3.446 19 O -0.525 6.525 20 C 0.104 3.896 21 C -0.089 4.089 22 C -0.067 4.067 23 C -0.090 4.090 24 C 0.277 3.723 25 N -0.544 5.544 26 C 0.245 3.755 27 N -0.342 5.342 28 N -0.272 5.272 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.025 0.975 36 H 0.022 0.978 37 H 0.251 0.749 38 H 0.113 0.887 39 H 0.024 0.976 40 H 0.414 0.586 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 13.880 -7.443 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 C -0.192 4.192 4 C 0.017 3.983 5 N -0.326 5.326 6 C -0.349 4.349 7 H 0.095 0.905 8 C -0.207 4.207 9 N -0.567 5.567 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.219 1.219 14 C 0.022 3.978 15 C 0.014 3.986 16 H 0.105 0.895 17 N -0.334 5.334 18 C 0.337 3.663 19 O -0.403 6.403 20 C -0.008 4.008 21 C -0.113 4.113 22 C -0.092 4.092 23 C -0.111 4.111 24 C 0.024 3.976 25 N -0.274 5.274 26 C -0.055 4.055 27 N -0.173 5.173 28 N -0.049 5.049 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.130 0.870 39 H 0.042 0.958 40 H 0.258 0.742 41 H 0.192 0.808 42 H 0.176 0.824 43 H 0.178 0.822 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.527 13.389 -7.333 16.236 hybrid contribution 0.677 -0.680 0.900 1.315 sum 6.204 12.710 -6.434 15.537 Atomic orbital electron populations 1.21688 0.93370 1.02510 1.00972 1.21869 0.96028 0.94583 0.96211 1.21754 1.00938 0.95319 1.01214 1.21404 0.96545 0.86732 0.93600 1.44441 1.74093 1.06752 1.07296 1.19084 1.33800 0.89182 0.92841 0.90501 1.24788 1.01850 0.97635 0.96386 1.69805 1.53869 1.22120 1.10864 0.86040 0.78380 0.82224 0.79113 1.20563 1.21712 1.21918 1.22296 1.00261 0.90051 0.85209 1.22696 0.80736 0.98665 0.96522 0.89479 1.46189 1.15532 1.57402 1.14299 1.17404 0.84450 0.80664 0.83831 1.90840 1.60059 1.41769 1.47607 1.20866 0.93337 0.98092 0.88507 1.21506 0.96045 0.99283 0.94429 1.21266 0.92912 0.94914 1.00133 1.20479 1.01808 1.00483 0.88363 1.21839 0.83209 0.96181 0.96414 1.70821 1.30927 1.26163 0.99529 1.26153 0.85442 0.94132 0.99799 1.78090 1.24574 1.25635 0.89043 1.47883 1.11102 1.35594 1.10362 0.92548 0.93076 0.91681 0.92443 0.93004 0.92557 0.95742 0.95968 0.93786 0.86959 0.95847 0.74243 0.80775 0.82361 0.82190 0.75548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.44 37.16 0.31 -1.66 16 2 C -0.09 -1.51 0.81 -152.54 -0.12 -1.63 16 3 C -0.13 -1.98 8.17 37.15 0.30 -1.67 16 4 C 0.14 3.01 6.40 -3.07 -0.02 2.99 16 5 N -0.60 -15.45 3.39 -170.07 -0.58 -16.02 16 6 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 9 N -0.92 -27.53 10.09 55.49 0.56 -26.97 16 10 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 C 0.15 3.71 5.27 -2.53 -0.01 3.69 16 15 C 0.12 2.41 2.57 -65.65 -0.17 2.24 16 16 H 0.09 1.73 7.63 -51.93 -0.40 1.33 16 17 N -0.68 -13.33 4.67 -52.74 -0.25 -13.58 16 18 C 0.55 10.65 7.77 -12.62 -0.10 10.56 16 19 O -0.53 -11.08 16.03 5.26 0.08 -11.00 16 20 C 0.10 1.64 6.80 -82.05 -0.56 1.08 16 21 C -0.09 -1.04 9.58 -39.15 -0.38 -1.42 16 22 C -0.07 -0.55 10.04 -39.67 -0.40 -0.95 16 23 C -0.09 -0.87 10.09 -39.32 -0.40 -1.27 16 24 C 0.28 3.84 7.88 -156.38 -1.23 2.61 16 25 N -0.54 -7.78 11.24 -13.99 -0.16 -7.94 16 26 C 0.24 3.32 12.98 -92.01 -1.19 2.12 16 27 N -0.34 -5.52 9.98 29.25 0.29 -5.23 16 28 N -0.27 -4.31 3.93 -8.82 -0.03 -4.35 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.12 7.46 -51.93 -0.39 0.73 16 32 H 0.06 0.89 6.21 -51.93 -0.32 0.57 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.51 7.84 -51.93 -0.41 0.10 16 36 H 0.02 0.47 7.82 -51.93 -0.41 0.07 16 37 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.11 3.28 5.87 -51.93 -0.31 2.97 16 39 H 0.02 0.63 7.73 -51.93 -0.40 0.23 16 40 H 0.41 7.91 3.75 -40.82 -0.15 7.76 16 41 H 0.17 1.81 7.59 -52.49 -0.40 1.42 16 42 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.23 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -35.10 357.57 -9.61 -44.71 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.68 Total: 7.46 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -4.21 Total: 9.89 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -0.16 Total: -74.08 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.10 -9.61 -44.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974783138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.818 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds