Wall clock time and date at job start Tue Mar 31 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 110.77844 * 2 1 4 4 C 1.54316 * 110.72327 * 123.23964 * 2 1 3 5 5 N 1.47026 * 107.27365 * 140.55544 * 4 2 1 6 6 C 1.36933 * 125.65326 * 180.79632 * 5 4 2 7 7 H 1.08005 * 119.99541 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00564 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99514 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00305 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47103 * 60.00082 * 10 8 6 12 12 H 1.48502 * 109.47327 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47083 * 299.99999 * 10 8 6 14 14 C 1.47425 * 108.70074 * 1.05989 * 5 4 2 15 15 C 1.54910 * 104.83231 * 335.87083 * 14 5 4 16 16 H 1.09004 * 111.03615 * 155.09334 * 15 14 5 17 17 N 1.46500 * 111.00688 * 278.93409 * 15 14 5 18 18 C 1.34776 * 119.99850 * 267.20143 * 17 15 14 19 19 O 1.21592 * 120.00306 * 359.97438 * 18 17 15 20 20 C 1.47581 * 119.99719 * 180.02562 * 18 17 15 21 21 C 1.41522 * 120.56774 * 359.97438 * 20 18 17 22 22 N 1.30905 * 120.16423 * 180.02562 * 21 20 18 23 23 C 1.34247 * 121.27646 * 359.97438 * 22 21 20 24 24 N 1.32430 * 131.63923 * 180.02562 * 23 22 21 25 25 C 1.33694 * 109.32921 * 180.02562 * 24 23 22 26 26 C 1.34907 * 108.65886 * 359.97438 * 25 24 23 27 27 N 1.37015 * 107.05275 * 0.02562 * 26 25 24 28 28 C 1.35973 * 132.54917 * 180.32866 * 27 26 25 29 29 H 1.09003 * 109.47103 * 298.21056 * 1 2 3 30 30 H 1.09000 * 109.47385 * 58.21349 * 1 2 3 31 31 H 1.09004 * 109.47258 * 178.21461 * 1 2 3 32 32 H 1.09002 * 109.47458 * 181.78632 * 3 2 1 33 33 H 1.09005 * 109.47376 * 301.78767 * 3 2 1 34 34 H 1.08996 * 109.47089 * 61.78713 * 3 2 1 35 35 H 1.09004 * 109.88447 * 21.14413 * 4 2 1 36 36 H 1.09000 * 109.88516 * 259.97202 * 4 2 1 37 37 H 0.97002 * 119.99999 * 179.97438 * 9 8 6 38 38 H 1.09001 * 110.36478 * 94.71036 * 14 5 4 39 39 H 1.08998 * 110.36859 * 217.03414 * 14 5 4 40 40 H 0.96995 * 120.00018 * 87.19266 * 17 15 14 41 41 H 1.07996 * 119.91338 * 359.97438 * 21 20 18 42 42 H 1.07998 * 125.67639 * 179.97438 * 25 24 23 43 43 H 1.07998 * 126.47472 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.58017 * 359.92145 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0760 -0.7911 1.2072 5 7 3.2445 -1.5507 0.7389 6 6 4.0070 -2.3935 1.5027 7 1 3.7666 -2.5438 2.5448 8 6 5.0895 -3.0539 0.9378 9 7 5.3827 -2.8703 -0.3321 10 14 6.1300 -4.2031 1.9799 11 1 5.2784 -5.2982 2.5099 12 1 7.2158 -4.7799 1.1471 13 1 6.7226 -3.4452 3.1112 14 6 3.4632 -1.2497 -0.6876 15 6 2.0789 -0.7954 -1.2138 16 1 2.1842 -0.1519 -2.0873 17 7 1.2270 -1.9487 -1.5145 18 6 1.2025 -2.4617 -2.7606 19 8 1.8870 -1.9670 -3.6354 20 6 0.3439 -3.6232 -3.0636 21 6 -0.4580 -4.2081 -2.0548 22 7 -1.2163 -5.2384 -2.3322 23 6 -1.2547 -5.7632 -3.5673 24 7 -1.9338 -6.7833 -4.0692 25 6 -1.6334 -6.9203 -5.3647 26 6 -0.7415 -5.9667 -5.7042 27 7 -0.4937 -5.2287 -4.5767 28 6 0.3054 -4.1548 -4.3380 29 1 -0.3633 0.4858 0.9056 30 1 -0.3634 0.5413 -0.8735 31 1 -0.3634 -1.0272 -0.0320 32 1 3.1620 1.4059 -0.0320 33 1 1.6955 1.9623 -0.8735 34 1 1.7474 1.9425 0.9055 35 1 1.3130 -1.4759 1.5775 36 1 2.3741 -0.1024 1.9976 37 1 6.1393 -3.3315 -0.7267 38 1 4.1931 -0.4478 -0.7986 39 1 3.7959 -2.1425 -1.2171 40 1 0.6808 -2.3432 -0.8168 41 1 -0.4437 -3.8038 -1.0535 42 1 -2.0374 -7.6698 -6.0292 43 1 -0.3047 -5.8144 -6.6801 44 1 0.9026 -3.7274 -5.1299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974822436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:51 Heat of formation + Delta-G solvation = 107.801394 kcal Electronic energy + Delta-G solvation = -28454.341015 eV Core-core repulsion = 24602.622182 eV Total energy + Delta-G solvation = -3851.718834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.22047 -40.10892 -38.56079 -37.56443 -34.85148 -33.95363 -33.27213 -31.34031 -30.75328 -29.47299 -28.23640 -26.94718 -25.68524 -25.07097 -24.28369 -23.25824 -22.08185 -21.05098 -20.11937 -19.01013 -18.74017 -17.75233 -17.11188 -16.79079 -16.55393 -15.99562 -15.59968 -14.83894 -14.51436 -14.37111 -14.25165 -13.99962 -13.92254 -13.77251 -13.60292 -13.27242 -12.83017 -12.57343 -12.28685 -12.03084 -11.96493 -11.83823 -11.37193 -11.23372 -11.06786 -10.84465 -10.80610 -10.50741 -10.31248 -10.23775 -10.05847 -9.89533 -9.75174 -9.71357 -9.38466 -8.76057 -8.54669 -8.41903 -6.87966 -5.69198 -3.12008 0.14209 0.60444 2.02355 2.32878 3.01760 3.26537 3.32498 3.37635 3.42486 3.43627 3.55122 4.06311 4.19375 4.44489 4.48360 4.60482 4.87761 4.97310 5.03986 5.15924 5.18723 5.20916 5.38277 5.46924 5.54688 5.70948 5.81458 5.82539 5.94978 6.03387 6.09119 6.17033 6.18811 6.23715 6.31949 6.42899 6.51188 6.56142 6.64259 6.86439 7.24646 7.37547 7.56410 7.67010 7.70323 7.83137 8.31186 8.35123 9.16322 9.77911 10.41033 11.33635 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.003892 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.456392 B = 7193.180503 C = 8542.292919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.129 4.129 4 C 0.141 3.859 5 N -0.601 5.601 6 C -0.226 4.226 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.145 3.855 15 C 0.123 3.877 16 H 0.093 0.907 17 N -0.688 5.688 18 C 0.575 3.425 19 O -0.537 6.537 20 C -0.213 4.213 21 C 0.203 3.797 22 N -0.437 5.437 23 C 0.385 3.615 24 N -0.473 5.473 25 C 0.049 3.951 26 C -0.095 4.095 27 N -0.401 5.401 28 C 0.182 3.818 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.023 0.977 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.023 0.977 39 H 0.113 0.887 40 H 0.397 0.603 41 H 0.185 0.815 42 H 0.190 0.810 43 H 0.190 0.810 44 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.756 1.720 -8.616 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.186 4.186 4 C 0.015 3.985 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.567 5.567 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.020 3.980 15 C 0.018 3.982 16 H 0.111 0.889 17 N -0.337 5.337 18 C 0.359 3.641 19 O -0.415 6.415 20 C -0.222 4.222 21 C 0.014 3.986 22 N -0.148 5.148 23 C 0.037 3.963 24 N -0.195 5.195 25 C -0.102 4.102 26 C -0.225 4.225 27 N -0.078 5.078 28 C 0.046 3.954 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.131 0.869 40 H 0.233 0.767 41 H 0.201 0.799 42 H 0.207 0.793 43 H 0.207 0.793 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.237 0.848 -8.354 15.675 hybrid contribution 1.526 0.039 -0.107 1.530 sum -11.711 0.887 -8.461 14.475 Atomic orbital electron populations 1.21731 0.94511 1.01217 1.01497 1.21858 0.94910 0.95821 0.96252 1.21690 1.01935 0.93992 1.01010 1.21437 0.90320 0.93046 0.93689 1.44459 1.30625 1.50403 1.07227 1.18990 1.06440 1.17184 0.92799 0.90534 1.24767 0.98696 1.00527 0.96327 1.69770 1.30033 1.46111 1.10755 0.86199 0.79885 0.80639 0.79037 1.21175 1.21632 1.21203 1.22332 0.88984 1.01466 0.85233 1.22634 0.93183 0.85665 0.96735 0.88947 1.45651 1.45427 1.32867 1.09770 1.17258 0.81387 0.82043 0.83383 1.90802 1.43150 1.61118 1.46466 1.20807 1.04991 1.02514 0.93862 1.23448 0.87313 0.88396 0.99402 1.67810 1.21525 1.11508 1.13948 1.22184 0.93834 0.94711 0.85580 1.70725 1.24424 1.15055 1.09334 1.22666 0.96767 0.98883 0.91928 1.22766 1.08852 0.99110 0.91726 1.44037 1.29635 1.21317 1.12810 1.22596 0.89705 0.84525 0.98541 0.92537 0.92750 0.92998 0.91711 0.93049 0.92575 0.95892 0.95702 0.93640 0.95915 0.86907 0.76666 0.79857 0.79283 0.79275 0.79172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.16 37.16 0.30 -1.23 16 2 C -0.09 -1.30 0.80 -152.68 -0.12 -1.42 16 3 C -0.13 -1.77 8.44 37.16 0.31 -1.46 16 4 C 0.14 2.60 6.41 -3.07 -0.02 2.58 16 5 N -0.60 -14.05 3.39 -170.07 -0.58 -14.63 16 6 C -0.23 -5.96 10.27 -15.06 -0.15 -6.11 16 7 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -26.12 10.09 55.49 0.56 -25.56 16 10 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.15 3.30 5.26 -2.53 -0.01 3.29 16 15 C 0.12 2.11 2.67 -65.78 -0.18 1.94 16 16 H 0.09 1.61 7.44 -51.93 -0.39 1.22 16 17 N -0.69 -10.50 4.47 -52.75 -0.24 -10.73 16 18 C 0.58 8.97 7.77 -12.45 -0.10 8.88 16 19 O -0.54 -9.93 16.02 5.28 0.08 -9.85 16 20 C -0.21 -2.81 5.88 -104.88 -0.62 -3.42 16 21 C 0.20 2.57 10.78 -16.70 -0.18 2.39 16 22 N -0.44 -6.54 10.45 -13.37 -0.14 -6.68 16 23 C 0.39 5.82 8.91 -322.25 -2.87 2.95 16 24 N -0.47 -7.06 11.31 -14.42 -0.16 -7.22 16 25 C 0.05 0.51 11.82 -17.92 -0.21 0.30 16 26 C -0.09 -0.91 11.77 -16.42 -0.19 -1.11 16 27 N -0.40 -5.00 2.94 -63.77 -0.19 -5.19 16 28 C 0.18 2.18 10.65 -15.76 -0.17 2.01 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.56 6.34 -51.93 -0.33 0.23 16 32 H 0.06 1.02 7.44 -51.93 -0.39 0.64 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.41 7.82 -51.93 -0.41 0.00 16 36 H 0.03 0.47 7.84 -51.93 -0.41 0.06 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.02 0.57 7.71 -51.93 -0.40 0.17 16 39 H 0.11 3.01 5.87 -51.93 -0.30 2.70 16 40 H 0.40 5.31 5.21 -40.82 -0.21 5.10 16 41 H 0.18 1.82 6.47 -52.49 -0.34 1.48 16 42 H 0.19 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.19 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.19 1.89 7.68 -52.48 -0.40 1.49 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -33.88 359.29 -10.23 -44.11 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.66 Total: 4.39 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: -4.30 Total: 9.29 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -0.74 Total: -70.01 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.88 -10.23 -44.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974822436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.907 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds