Wall clock time and date at job start Tue Mar 31 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 110.91466 * 2 1 4 4 C 1.55384 * 111.18631 * 235.94488 * 2 1 3 5 5 N 1.47427 * 104.87162 * 204.98228 * 4 2 1 6 6 C 1.36942 * 125.64599 * 204.16860 * 5 4 2 7 7 H 1.07997 * 120.00036 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99764 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99819 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99861 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47322 * 90.00199 * 10 8 6 12 12 H 1.48500 * 109.47032 * 209.99962 * 10 8 6 13 13 H 1.48502 * 109.47355 * 329.99886 * 10 8 6 14 14 C 1.47021 * 108.70575 * 24.13168 * 5 4 2 15 15 C 1.54331 * 107.26870 * 358.94136 * 14 5 4 16 16 H 1.08993 * 110.71809 * 219.26664 * 15 14 5 17 17 N 1.46496 * 110.71697 * 96.17069 * 15 14 5 18 18 C 1.34777 * 119.99875 * 88.84608 * 17 15 14 19 19 O 1.21597 * 119.99996 * 0.26804 * 18 17 15 20 20 C 1.47586 * 120.00060 * 179.97438 * 18 17 15 21 21 C 1.41516 * 120.56601 * 359.97438 * 20 18 17 22 22 N 1.30905 * 120.16615 * 180.02562 * 21 20 18 23 23 C 1.34252 * 121.27296 * 359.97438 * 22 21 20 24 24 N 1.32427 * 131.63442 * 180.02562 * 23 22 21 25 25 C 1.33700 * 109.32693 * 179.97438 * 24 23 22 26 26 C 1.34901 * 108.65361 * 359.97438 * 25 24 23 27 27 N 1.37010 * 107.06094 * 0.02562 * 26 25 24 28 28 C 1.35967 * 132.54974 * 180.32489 * 27 26 25 29 29 H 1.09000 * 109.47136 * 296.09551 * 1 2 3 30 30 H 1.09000 * 109.46710 * 56.09577 * 1 2 3 31 31 H 1.08996 * 109.46823 * 176.09619 * 1 2 3 32 32 H 1.08993 * 109.47011 * 183.90122 * 3 2 1 33 33 H 1.08994 * 109.47291 * 303.90534 * 3 2 1 34 34 H 1.09004 * 109.46534 * 63.90632 * 3 2 1 35 35 H 1.09000 * 110.34614 * 86.13082 * 4 2 1 36 36 H 1.09005 * 110.44500 * 323.87679 * 4 2 1 37 37 H 0.97002 * 119.99378 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.88049 * 239.52699 * 14 5 4 39 39 H 1.08995 * 109.88554 * 118.36122 * 14 5 4 40 40 H 0.96999 * 120.00082 * 268.84271 * 17 15 14 41 41 H 1.08005 * 119.91383 * 0.02562 * 21 20 18 42 42 H 1.07994 * 125.67381 * 180.02562 * 25 24 23 43 43 H 1.08005 * 126.46994 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.58767 * 359.92001 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0763 1.4292 0.0000 4 6 2.0917 -0.8113 -1.2003 5 7 3.4327 -1.2461 -0.7689 6 6 4.4724 -1.5693 -1.5994 7 1 4.3447 -1.5161 -2.6705 8 6 5.6906 -1.9654 -1.0645 9 7 5.8461 -2.0307 0.2408 10 14 7.1091 -2.4056 -2.1973 11 1 7.9116 -1.1888 -2.4816 12 1 7.9688 -3.4234 -1.5415 13 1 6.5747 -2.9545 -3.4695 14 6 3.4691 -1.2743 0.7006 15 6 2.0861 -0.8080 1.2022 16 1 2.1892 -0.1708 2.0805 17 7 1.2268 -1.9575 1.4961 18 6 1.2427 -2.5144 2.7233 19 8 1.9667 -2.0596 3.5880 20 6 0.3766 -3.6721 3.0196 21 6 -0.4755 -4.2067 2.0243 22 7 -1.2408 -5.2335 2.2957 23 6 -1.2386 -5.8021 3.5119 24 7 -1.9149 -6.8287 4.0044 25 6 -1.5650 -7.0176 5.2808 26 6 -0.6426 -6.0923 5.6169 27 7 -0.4277 -5.3176 4.5075 28 6 0.3888 -4.2563 4.2713 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3633 -1.0253 -0.0700 32 1 3.1636 1.4026 -0.0699 33 1 1.6705 1.9732 -0.8529 34 1 1.7837 1.9299 0.9230 35 1 2.1643 -0.1784 -2.0848 36 1 1.4600 -1.6760 -1.4043 37 1 6.6975 -2.3071 0.6145 38 1 4.2429 -0.5986 1.0652 39 1 3.6665 -2.2887 1.0471 40 1 0.6464 -2.3178 0.8075 41 1 -0.4944 -3.7665 1.0382 42 1 -1.9551 -7.7841 5.9340 43 1 -0.1640 -5.9829 6.5789 44 1 1.0324 -3.8741 5.0498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974822448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:54 Heat of formation + Delta-G solvation = 107.204160 kcal Electronic energy + Delta-G solvation = -28257.562878 eV Core-core repulsion = 24405.818146 eV Total energy + Delta-G solvation = -3851.744732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.28650 -40.17965 -38.57721 -37.61180 -34.92078 -34.02304 -33.21767 -31.41080 -30.74506 -29.53674 -28.18933 -26.93759 -25.69346 -25.13928 -24.35475 -23.30416 -22.14182 -21.06581 -20.14745 -19.07062 -18.81553 -17.80757 -17.16453 -16.76107 -16.61905 -16.04135 -15.56867 -14.94281 -14.51220 -14.42927 -14.30736 -14.05233 -13.97625 -13.84457 -13.66166 -13.33728 -12.67755 -12.62011 -12.23727 -12.05090 -12.00244 -11.74953 -11.45803 -11.15312 -11.04551 -10.91319 -10.81793 -10.50151 -10.36755 -10.27544 -10.08929 -9.93765 -9.79621 -9.69491 -9.45249 -8.72223 -8.61730 -8.48562 -6.87966 -5.73923 -3.08522 0.07193 0.53230 1.95753 2.26626 2.95010 3.17932 3.25538 3.38055 3.43395 3.45346 3.46957 3.98743 4.12907 4.41410 4.46562 4.52898 4.80948 4.91665 4.98504 5.11562 5.19209 5.21819 5.31050 5.49125 5.55457 5.70794 5.75905 5.85036 5.93784 6.08131 6.10085 6.12276 6.15663 6.17885 6.30298 6.46731 6.52328 6.57489 6.61240 6.85499 7.17844 7.45168 7.54492 7.61024 7.64926 7.79551 8.19871 8.27179 9.17566 9.78308 10.42691 11.36863 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013838 B = 0.003340 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.868214 B = 8380.916150 C = 9378.917242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 C -0.126 4.126 4 C 0.142 3.858 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.919 5.919 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.175 3.825 15 C 0.124 3.876 16 H 0.092 0.908 17 N -0.697 5.697 18 C 0.574 3.426 19 O -0.532 6.532 20 C -0.215 4.215 21 C 0.201 3.799 22 N -0.437 5.437 23 C 0.385 3.615 24 N -0.472 5.472 25 C 0.049 3.951 26 C -0.093 4.093 27 N -0.401 5.401 28 C 0.184 3.816 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.017 0.983 37 H 0.253 0.747 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.396 0.604 41 H 0.184 0.816 42 H 0.191 0.809 43 H 0.191 0.809 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.266 -0.887 8.663 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.091 4.091 3 C -0.184 4.184 4 C 0.016 3.984 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.049 3.951 15 C 0.019 3.981 16 H 0.110 0.890 17 N -0.347 5.347 18 C 0.358 3.642 19 O -0.410 6.410 20 C -0.225 4.225 21 C 0.013 3.987 22 N -0.147 5.147 23 C 0.036 3.964 24 N -0.194 5.194 25 C -0.102 4.102 26 C -0.223 4.223 27 N -0.078 5.078 28 C 0.048 3.952 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.232 0.768 41 H 0.201 0.799 42 H 0.208 0.792 43 H 0.208 0.792 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -14.735 -1.673 8.418 17.053 hybrid contribution 1.757 0.243 0.168 1.781 sum -12.979 -1.430 8.587 15.628 Atomic orbital electron populations 1.21690 0.94605 1.01088 1.01610 1.22112 0.94474 0.96110 0.96409 1.21597 1.02573 0.93581 1.00630 1.21734 0.87766 0.94554 0.94340 1.44426 1.07646 1.79065 1.01741 1.19020 0.89276 1.38544 0.88953 0.90426 1.24800 0.97839 1.01695 0.95959 1.69947 1.24264 1.53351 1.09051 0.86143 0.82419 0.77805 0.79513 1.21612 1.21753 1.20735 1.21542 0.89406 1.00572 0.83541 1.22601 0.92291 0.85721 0.97456 0.88986 1.45875 1.43924 1.33179 1.11748 1.17296 0.81725 0.81956 0.83229 1.90826 1.41119 1.62743 1.46309 1.20807 1.04710 1.02396 0.94540 1.23433 0.87376 0.88878 0.99046 1.67809 1.22415 1.10397 1.14126 1.22175 0.92907 0.95207 0.86079 1.70730 1.24988 1.13929 1.09793 1.22679 0.96185 0.99189 0.92139 1.22785 1.08549 0.98451 0.92535 1.44038 1.28300 1.21693 1.13801 1.22617 0.89979 0.84268 0.98313 0.92719 0.92412 0.93134 0.91128 0.92766 0.93279 0.93959 0.96583 0.93702 0.92594 0.93300 0.76819 0.79880 0.79230 0.79217 0.79116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.23 37.16 0.31 -1.17 16 2 C -0.09 -1.33 0.84 -152.10 -0.13 -1.46 16 3 C -0.13 -1.83 8.58 37.16 0.32 -1.52 16 4 C 0.14 2.59 6.16 -2.27 -0.01 2.58 16 5 N -0.60 -14.15 3.38 -169.76 -0.57 -14.73 16 6 C -0.23 -6.10 10.28 -15.06 -0.15 -6.26 16 7 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 8 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 9 N -0.92 -26.47 10.31 55.49 0.57 -25.89 16 10 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.17 4.00 4.80 -3.06 -0.01 3.98 16 15 C 0.12 2.10 2.54 -66.10 -0.17 1.94 16 16 H 0.09 1.62 7.52 -51.93 -0.39 1.23 16 17 N -0.70 -10.01 4.46 -53.05 -0.24 -10.25 16 18 C 0.57 8.51 7.77 -12.45 -0.10 8.42 16 19 O -0.53 -9.63 16.06 5.28 0.08 -9.55 16 20 C -0.22 -2.64 5.89 -104.87 -0.62 -3.26 16 21 C 0.20 2.33 10.78 -16.70 -0.18 2.15 16 22 N -0.44 -6.13 10.45 -13.37 -0.14 -6.27 16 23 C 0.38 5.51 8.91 -322.26 -2.87 2.64 16 24 N -0.47 -6.73 11.31 -14.42 -0.16 -6.90 16 25 C 0.05 0.49 11.82 -17.92 -0.21 0.28 16 26 C -0.09 -0.85 11.76 -16.42 -0.19 -1.04 16 27 N -0.40 -4.72 2.94 -63.77 -0.19 -4.91 16 28 C 0.18 2.07 10.66 -15.76 -0.17 1.90 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.50 6.44 -51.93 -0.33 0.17 16 32 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 36 H 0.02 0.29 8.00 -51.93 -0.42 -0.13 16 37 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.06 1.46 7.38 -51.93 -0.38 1.08 16 39 H 0.05 1.29 7.41 -51.93 -0.38 0.91 16 40 H 0.40 4.72 5.09 -40.82 -0.21 4.51 16 41 H 0.18 1.55 6.48 -52.48 -0.34 1.21 16 42 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.19 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.19 1.78 7.68 -52.48 -0.40 1.38 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -34.48 361.10 -10.29 -44.77 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.77 Total: 2.66 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -4.29 Total: 8.91 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -0.73 Total: -68.94 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.48 -10.29 -44.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974822448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.970 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds