Wall clock time and date at job start Tue Mar 31 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 110.78185 * 2 1 4 4 C 1.54326 * 110.72259 * 236.76085 * 2 1 3 5 5 N 1.47018 * 107.27190 * 263.83068 * 4 2 1 6 6 C 1.36940 * 125.64634 * 181.09116 * 5 4 2 7 7 H 1.08004 * 119.99592 * 173.81301 * 6 5 4 8 8 C 1.38803 * 120.00193 * 353.81200 * 6 5 4 9 9 N 1.31631 * 120.00095 * 6.80994 * 8 6 5 10 10 Si 1.86804 * 120.00004 * 186.80895 * 8 6 5 11 11 H 1.48495 * 109.46972 * 94.98829 * 10 8 6 12 12 H 1.48502 * 109.46827 * 214.98541 * 10 8 6 13 13 H 1.48493 * 109.46876 * 334.98233 * 10 8 6 14 14 C 1.47426 * 108.70435 * 1.05566 * 5 4 2 15 15 C 1.54909 * 104.83171 * 335.87431 * 14 5 4 16 16 H 1.08994 * 111.00820 * 155.12165 * 15 14 5 17 17 N 1.46505 * 111.00442 * 278.93752 * 15 14 5 18 18 C 1.34782 * 119.99486 * 273.54933 * 17 15 14 19 19 O 1.21710 * 120.00151 * 359.97438 * 18 17 15 20 20 C 1.46581 * 119.99772 * 179.97438 * 18 17 15 21 21 C 1.40644 * 126.53966 * 0.02562 * 20 18 17 22 22 N 1.30695 * 108.72640 * 180.26248 * 21 20 18 23 23 N 1.39905 * 109.51952 * 359.57797 * 22 21 20 24 24 C 1.36324 * 132.16141 * 180.10898 * 23 22 21 25 25 C 1.35751 * 119.15524 * 180.33881 * 24 23 22 26 26 C 1.39965 * 119.35379 * 0.02562 * 25 24 23 27 27 N 1.31499 * 120.11266 * 359.97438 * 26 25 24 28 28 C 1.33381 * 120.84836 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46666 * 296.76168 * 1 2 3 30 30 H 1.08998 * 109.46779 * 56.76189 * 1 2 3 31 31 H 1.08999 * 109.47087 * 176.76406 * 1 2 3 32 32 H 1.08995 * 109.47870 * 183.24182 * 3 2 1 33 33 H 1.09003 * 109.46830 * 303.24268 * 3 2 1 34 34 H 1.09002 * 109.46677 * 63.23741 * 3 2 1 35 35 H 1.08995 * 109.88256 * 144.40845 * 4 2 1 36 36 H 1.08998 * 109.87635 * 23.24785 * 4 2 1 37 37 H 0.96996 * 119.99922 * 180.02562 * 9 8 6 38 38 H 1.08992 * 110.36676 * 217.03201 * 14 5 4 39 39 H 1.09003 * 110.36444 * 94.70672 * 14 5 4 40 40 H 0.96994 * 120.00402 * 93.54534 * 17 15 14 41 41 H 1.08007 * 125.63877 * 0.02562 * 21 20 18 42 42 H 1.07998 * 120.41917 * 0.36086 * 24 23 22 43 43 H 1.07992 * 120.32137 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.94602 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0761 -0.7912 -1.2073 5 7 2.3717 -2.1531 -0.7390 6 6 2.8945 -3.1633 -1.5015 7 1 3.1693 -4.1007 -1.0409 8 6 3.0714 -2.9824 -2.8663 9 7 2.8641 -1.7998 -3.4058 10 14 3.6038 -4.4173 -3.9374 11 1 2.4061 -5.0588 -4.5365 12 1 4.4943 -3.9242 -5.0186 13 1 4.3343 -5.4094 -3.1084 14 6 2.0127 -2.2509 0.6875 15 6 2.0790 -0.7954 1.2138 16 1 1.4402 -0.6664 2.0874 17 7 3.4596 -0.4081 1.5144 18 6 3.9889 -0.6839 2.7228 19 8 3.3198 -1.2543 3.5645 20 6 5.3704 -0.2969 3.0235 21 6 6.2618 0.3639 2.1593 22 7 7.4001 0.5318 2.7790 23 7 7.3110 0.0037 4.0715 24 6 8.2088 -0.0669 5.0950 25 6 7.8378 -0.6554 6.2607 26 6 6.5445 -1.1759 6.3853 27 7 5.7003 -1.0929 5.3805 28 6 6.0582 -0.5161 4.2324 29 1 -0.3632 0.4627 0.9176 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0260 -0.0580 32 1 3.1610 1.4063 -0.0581 33 1 1.6751 1.9700 -0.8595 34 1 1.7691 1.9343 0.9176 35 1 2.9868 -0.3206 -1.5775 36 1 1.3263 -0.8254 -1.9977 37 1 2.9874 -1.6736 -4.3596 38 1 2.7294 -2.8787 1.2168 39 1 1.0039 -2.6487 0.7984 40 1 3.9927 0.0467 0.8438 41 1 6.0432 0.6770 1.1490 42 1 9.2024 0.3404 4.9800 43 1 8.5337 -0.7213 7.0839 44 1 6.2391 -1.6457 7.3086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974905293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:22 Heat of formation + Delta-G solvation = 117.026856 kcal Electronic energy + Delta-G solvation = -28411.316639 eV Core-core repulsion = 24559.997851 eV Total energy + Delta-G solvation = -3851.318788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.61654 -39.55568 -38.32938 -37.48897 -34.23737 -33.73053 -32.79400 -31.39557 -30.98000 -29.66153 -27.61399 -26.61029 -25.66478 -25.15896 -24.26173 -23.08306 -22.48868 -20.54965 -19.69019 -18.81203 -18.23420 -17.52159 -17.08922 -16.65064 -16.36918 -15.97333 -15.58768 -14.58040 -14.49465 -14.27104 -13.94756 -13.76724 -13.58137 -13.43458 -13.17716 -12.91457 -12.87234 -12.60919 -12.18171 -11.83850 -11.69706 -11.66761 -11.44344 -11.31988 -11.08424 -10.82393 -10.71415 -10.20551 -10.11242 -10.02344 -9.96734 -9.88142 -9.74133 -9.44784 -9.38030 -8.59638 -8.42830 -8.09143 -6.73270 -5.67774 -2.98152 0.15911 0.53185 1.70324 2.06984 3.00536 3.43399 3.49436 3.50609 3.53721 3.59833 3.83913 3.97735 4.04221 4.51568 4.55253 4.72142 4.94671 4.97394 5.12036 5.13449 5.40649 5.48703 5.54533 5.60483 5.64639 5.73488 5.96832 5.99630 6.02052 6.11224 6.17311 6.25616 6.32713 6.40440 6.57353 6.62204 6.73451 6.81746 6.87905 7.09012 7.22350 7.39972 7.58151 7.67669 7.86275 8.09701 8.31052 8.80312 9.28173 9.88239 10.55479 11.44468 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.003547 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.035685 B = 7892.425507 C = 8789.767226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C -0.126 4.126 4 C 0.189 3.811 5 N -0.603 5.603 6 C -0.221 4.221 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.126 3.874 15 C 0.144 3.856 16 H 0.087 0.913 17 N -0.702 5.702 18 C 0.593 3.407 19 O -0.538 6.538 20 C -0.275 4.275 21 C 0.131 3.869 22 N -0.311 5.311 23 N -0.309 5.309 24 C 0.165 3.835 25 C -0.226 4.226 26 C 0.179 3.821 27 N -0.437 5.437 28 C 0.313 3.687 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.048 0.952 37 H 0.251 0.749 38 H 0.042 0.958 39 H 0.027 0.973 40 H 0.397 0.603 41 H 0.206 0.794 42 H 0.182 0.818 43 H 0.170 0.830 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 8.323 17.759 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C -0.184 4.184 4 C 0.065 3.935 5 N -0.329 5.329 6 C -0.350 4.350 7 H 0.093 0.907 8 C -0.203 4.203 9 N -0.569 5.569 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.208 1.208 14 C -0.002 4.002 15 C 0.038 3.962 16 H 0.105 0.895 17 N -0.353 5.353 18 C 0.380 3.620 19 O -0.416 6.416 20 C -0.292 4.292 21 C -0.050 4.050 22 N -0.133 5.133 23 N -0.078 5.078 24 C 0.029 3.971 25 C -0.249 4.249 26 C -0.004 4.004 27 N -0.147 5.147 28 C 0.081 3.919 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.233 0.767 41 H 0.223 0.777 42 H 0.199 0.801 43 H 0.187 0.813 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.635 8.095 17.775 21.355 hybrid contribution 0.788 -0.604 -1.020 1.423 sum 9.423 7.491 16.754 20.630 Atomic orbital electron populations 1.21668 0.93908 1.02098 1.00643 1.22195 0.95863 0.95236 0.97244 1.21656 1.00308 0.95491 1.00970 1.21271 0.98513 0.83404 0.90343 1.44439 1.74378 1.09165 1.04921 1.19064 1.33918 0.92943 0.89055 0.90651 1.24756 1.02123 0.96929 0.96537 1.69959 1.55762 1.20302 1.10924 0.86162 0.77826 0.81808 0.80408 1.21722 1.21892 1.20785 1.21945 0.97704 0.93810 0.86697 1.22108 0.81520 0.95865 0.96668 0.89525 1.45599 1.14821 1.60569 1.14272 1.16688 0.84290 0.78821 0.82194 1.90806 1.61389 1.42128 1.47232 1.19595 0.98233 1.18225 0.93106 1.24232 0.88857 0.92282 0.99615 1.77608 1.22761 1.25298 0.87667 1.47067 1.10979 1.38108 1.11652 1.22125 0.95287 0.95203 0.84530 1.21916 1.00020 1.04584 0.98422 1.23626 0.88698 0.91079 0.96995 1.68350 1.33710 1.14771 0.97889 1.20390 0.83664 0.93876 0.93935 0.93577 0.92499 0.92182 0.93067 0.92491 0.93329 0.93964 0.93394 0.93907 0.93963 0.95524 0.76736 0.77733 0.80091 0.81284 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.41 37.16 0.31 -1.73 16 2 C -0.10 -1.86 0.81 -152.67 -0.12 -1.98 16 3 C -0.13 -1.89 8.07 37.16 0.30 -1.59 16 4 C 0.19 4.38 4.55 -3.07 -0.01 4.37 16 5 N -0.60 -15.29 3.39 -170.08 -0.58 -15.86 16 6 C -0.22 -6.23 10.26 -15.06 -0.15 -6.38 16 7 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 8 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 9 N -0.92 -26.60 10.36 55.49 0.58 -26.02 16 10 Si 0.91 22.36 29.56 -169.99 -5.02 17.34 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 14 C 0.13 2.79 6.62 -2.53 -0.02 2.78 16 15 C 0.14 2.70 2.56 -65.78 -0.17 2.53 16 16 H 0.09 1.62 7.63 -51.93 -0.40 1.22 16 17 N -0.70 -12.37 4.68 -53.06 -0.25 -12.61 16 18 C 0.59 11.12 7.78 -12.89 -0.10 11.02 16 19 O -0.54 -11.76 16.48 5.18 0.09 -11.67 16 20 C -0.28 -4.51 6.17 -104.66 -0.65 -5.15 16 21 C 0.13 1.79 11.44 -17.13 -0.20 1.60 16 22 N -0.31 -4.24 12.58 30.77 0.39 -3.85 16 23 N -0.31 -3.89 3.86 -11.97 -0.05 -3.93 16 24 C 0.16 1.25 11.29 -16.45 -0.19 1.07 16 25 C -0.23 -1.23 10.05 -39.83 -0.40 -1.63 16 26 C 0.18 1.48 11.28 -17.05 -0.19 1.29 16 27 N -0.44 -6.22 10.26 -12.00 -0.12 -6.35 16 28 C 0.31 4.79 7.74 -155.83 -1.21 3.58 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.06 7.57 -51.93 -0.39 0.66 16 32 H 0.05 0.73 6.35 -51.93 -0.33 0.40 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.04 1.06 7.17 -51.93 -0.37 0.69 16 36 H 0.05 1.25 7.07 -51.93 -0.37 0.89 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.59 7.80 -51.93 -0.41 0.19 16 40 H 0.40 6.42 5.80 -40.82 -0.24 6.19 16 41 H 0.21 2.19 7.46 -52.48 -0.39 1.80 16 42 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.17 0.17 8.06 -52.49 -0.42 -0.25 16 44 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -37.14 362.90 -8.21 -45.35 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.82 Total: 2.70 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -2.89 Total: 9.45 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -0.03 Total: -68.63 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.14 -8.21 -45.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974905293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.379 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds