Wall clock time and date at job start Tue Mar 31 2020 05:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.78282 * 2 1 4 4 C 1.54324 * 110.71738 * 236.76142 * 2 1 3 5 5 N 1.47025 * 107.26886 * 219.44739 * 4 2 1 6 6 C 1.36942 * 125.64665 * 178.98056 * 5 4 2 7 7 H 1.07997 * 119.99935 * 359.97438 * 6 5 4 8 8 C 1.38807 * 119.99870 * 179.97438 * 6 5 4 9 9 N 1.31624 * 120.00387 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00076 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47128 * 59.99997 * 10 8 6 12 12 H 1.48496 * 109.47314 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47122 * 300.00109 * 10 8 6 14 14 C 1.47527 * 108.71644 * 358.94055 * 5 4 2 15 15 C 1.54905 * 104.78029 * 24.12063 * 14 5 4 16 16 H 1.09000 * 111.00664 * 204.89687 * 15 14 5 17 17 N 1.46504 * 111.00306 * 81.08986 * 15 14 5 18 18 C 1.34775 * 120.00298 * 89.57786 * 17 15 14 19 19 O 1.21721 * 119.99898 * 0.02562 * 18 17 15 20 20 C 1.46580 * 120.00469 * 179.97438 * 18 17 15 21 21 C 1.40657 * 126.53518 * 0.76402 * 20 18 17 22 22 N 1.30700 * 108.72511 * 179.97438 * 21 20 18 23 23 N 1.39907 * 109.51819 * 359.50987 * 22 21 20 24 24 C 1.36314 * 132.15965 * 179.97438 * 23 22 21 25 25 C 1.35760 * 119.15559 * 179.71789 * 24 23 22 26 26 C 1.39965 * 119.35228 * 0.28279 * 25 24 23 27 27 N 1.31492 * 120.11084 * 359.97438 * 26 25 24 28 28 C 1.33387 * 120.85304 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47205 * 296.76254 * 1 2 3 30 30 H 1.09005 * 109.47011 * 56.76130 * 1 2 3 31 31 H 1.08998 * 109.47349 * 176.76051 * 1 2 3 32 32 H 1.08994 * 109.47305 * 183.24162 * 3 2 1 33 33 H 1.09004 * 109.46849 * 303.23918 * 3 2 1 34 34 H 1.09000 * 109.47150 * 63.23489 * 3 2 1 35 35 H 1.08999 * 109.88521 * 338.85931 * 4 2 1 36 36 H 1.09001 * 109.88645 * 99.87552 * 4 2 1 37 37 H 0.96995 * 120.00308 * 179.97438 * 9 8 6 38 38 H 1.08998 * 110.36716 * 265.30939 * 14 5 4 39 39 H 1.09003 * 110.40927 * 142.95445 * 14 5 4 40 40 H 0.97002 * 119.99695 * 269.58313 * 17 15 14 41 41 H 1.08002 * 125.63262 * 359.43211 * 21 20 18 42 42 H 1.08002 * 120.42483 * 0.02562 * 24 23 22 43 43 H 1.07993 * 120.32164 * 180.29863 * 25 24 23 44 44 H 1.08005 * 119.94215 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0759 -0.7912 -1.2073 5 7 3.2444 -1.5508 -0.7390 6 6 4.0042 -2.3971 -1.5018 7 1 3.7610 -2.5509 -2.5428 8 6 5.0868 -3.0571 -0.9372 9 7 5.3836 -2.8692 0.3314 10 14 6.1229 -4.2120 -1.9775 11 1 6.7140 -3.4594 -3.1131 12 1 7.2105 -4.7865 -1.1455 13 1 5.2682 -5.3076 -2.5012 14 6 3.4635 -1.2499 0.6885 15 6 2.0789 -0.7955 1.2137 16 1 2.1843 -0.1521 2.0872 17 7 1.2270 -1.9488 1.5144 18 6 1.2504 -2.5018 2.7433 19 8 1.9790 -2.0427 3.6035 20 6 0.3976 -3.6554 3.0443 21 6 -0.4808 -4.3018 2.1561 22 7 -1.0659 -5.2859 2.7865 23 7 -0.5974 -5.3415 4.1037 24 6 -0.8913 -6.1705 5.1451 25 6 -0.2627 -5.9870 6.3343 26 6 0.6669 -4.9489 6.4660 27 7 0.9259 -4.1619 5.4449 28 6 0.3120 -4.3366 4.2736 29 1 -0.3633 0.4627 0.9176 30 1 -0.3633 0.5633 -0.8596 31 1 -0.3634 -1.0260 -0.0581 32 1 3.1610 1.4061 -0.0581 33 1 1.6751 1.9700 -0.8596 34 1 1.7691 1.9343 0.9176 35 1 1.3129 -1.4758 -1.5776 36 1 2.3715 -0.1026 -1.9989 37 1 6.1399 -3.3308 0.7260 38 1 4.1933 -0.4479 0.7994 39 1 3.7961 -2.1425 1.2185 40 1 0.6461 -2.3145 0.8290 41 1 -0.6507 -4.0248 1.1262 42 1 -1.6113 -6.9663 5.0243 43 1 -0.4776 -6.6358 7.1704 44 1 1.1722 -4.7940 7.4079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974905294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:25 Heat of formation + Delta-G solvation = 119.735612 kcal Electronic energy + Delta-G solvation = -28589.849939 eV Core-core repulsion = 24738.648612 eV Total energy + Delta-G solvation = -3851.201327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51809 -39.44150 -38.25364 -37.39947 -34.13523 -33.70156 -32.84367 -31.29399 -30.62038 -29.64773 -27.89881 -26.69264 -25.53040 -25.06919 -24.16093 -22.98952 -22.39734 -20.45616 -19.63429 -18.81279 -18.23159 -17.44579 -16.89078 -16.59708 -16.27096 -15.93647 -15.49656 -14.56759 -14.47787 -13.99024 -13.90858 -13.76736 -13.55236 -13.49649 -13.11999 -13.07749 -12.77631 -12.57534 -12.09289 -11.83297 -11.65327 -11.58862 -11.37210 -11.18608 -11.08422 -10.90104 -10.70473 -10.31347 -10.14727 -9.93054 -9.83952 -9.79039 -9.70150 -9.59966 -9.22543 -8.59246 -8.25333 -7.95484 -6.72115 -5.54340 -2.97629 0.25999 0.62525 1.79073 2.16828 3.11887 3.44643 3.48712 3.50930 3.65294 3.70193 4.00282 4.09150 4.14258 4.55323 4.60350 4.79658 5.04042 5.06164 5.09793 5.21726 5.33690 5.37647 5.60146 5.64205 5.71943 5.75905 5.90338 5.96789 6.07976 6.12084 6.18926 6.25642 6.29777 6.36883 6.53701 6.57024 6.72160 6.78884 6.88960 7.14433 7.17525 7.50856 7.62549 7.70514 7.99878 8.25752 8.49704 8.99609 9.30283 9.92179 10.56774 11.47797 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.004118 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.514453 B = 6797.801302 C = 8082.461947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.144 3.856 5 N -0.601 5.601 6 C -0.226 4.226 7 H 0.075 0.925 8 C -0.008 4.008 9 N -0.915 5.915 10 Si 0.910 3.090 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.129 3.871 16 H 0.086 0.914 17 N -0.701 5.701 18 C 0.593 3.407 19 O -0.532 6.532 20 C -0.270 4.270 21 C 0.129 3.871 22 N -0.314 5.314 23 N -0.309 5.309 24 C 0.163 3.837 25 C -0.225 4.225 26 C 0.178 3.822 27 N -0.434 5.434 28 C 0.312 3.688 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.020 0.980 36 H 0.022 0.978 37 H 0.252 0.748 38 H 0.019 0.981 39 H 0.113 0.887 40 H 0.391 0.609 41 H 0.204 0.796 42 H 0.181 0.819 43 H 0.169 0.831 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.208 -3.292 10.253 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.018 3.982 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.093 0.907 8 C -0.204 4.204 9 N -0.563 5.563 10 Si 0.741 3.259 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.024 3.976 16 H 0.104 0.896 17 N -0.351 5.351 18 C 0.380 3.620 19 O -0.409 6.409 20 C -0.286 4.286 21 C -0.052 4.052 22 N -0.136 5.136 23 N -0.078 5.078 24 C 0.027 3.973 25 C -0.249 4.249 26 C -0.006 4.006 27 N -0.144 5.144 28 C 0.081 3.919 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.131 0.869 40 H 0.226 0.774 41 H 0.221 0.779 42 H 0.198 0.802 43 H 0.187 0.813 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.752 -3.259 10.525 19.223 hybrid contribution 0.321 -0.992 -0.956 1.415 sum -15.431 -4.251 9.569 18.648 Atomic orbital electron populations 1.21705 0.94683 1.01140 1.01204 1.21842 0.94794 0.95720 0.96552 1.21680 1.01910 0.94167 1.00794 1.21391 0.90288 0.92916 0.93614 1.44477 1.30621 1.50183 1.07401 1.18966 1.06445 1.17186 0.92801 0.90703 1.24778 0.98767 1.00576 0.96273 1.69811 1.29868 1.45901 1.10740 0.86226 0.79918 0.80744 0.79009 1.21283 1.21682 1.21325 1.22330 0.89362 1.01342 0.84912 1.22452 0.93097 0.86012 0.96064 0.89580 1.45498 1.44544 1.33149 1.11899 1.16629 0.81333 0.81547 0.82526 1.90822 1.40680 1.62600 1.46781 1.19657 1.11118 1.06209 0.91641 1.24164 0.91059 0.90205 0.99794 1.77563 1.25385 1.24554 0.86103 1.47037 1.28653 1.21889 1.10268 1.22096 0.97783 0.93203 0.84254 1.21911 1.01599 1.03391 0.98005 1.23621 0.91520 0.88054 0.97369 1.68353 1.22328 1.26415 0.97297 1.20394 0.89064 0.88578 0.93874 0.92817 0.92845 0.92979 0.91769 0.92811 0.93080 0.96186 0.96000 0.93698 0.96287 0.86937 0.77432 0.77945 0.80185 0.81346 0.80034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.07 37.16 0.30 -1.45 16 2 C -0.09 -1.49 0.80 -152.68 -0.12 -1.62 16 3 C -0.13 -1.99 8.41 37.16 0.31 -1.68 16 4 C 0.14 2.92 6.41 -3.06 -0.02 2.90 16 5 N -0.60 -15.26 3.40 -169.99 -0.58 -15.84 16 6 C -0.23 -6.32 10.27 -15.06 -0.15 -6.48 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.81 10.09 55.49 0.56 -27.25 16 10 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.15 3.70 5.28 -2.47 -0.01 3.68 16 15 C 0.13 2.60 2.61 -65.78 -0.17 2.42 16 16 H 0.09 1.78 7.53 -51.93 -0.39 1.39 16 17 N -0.70 -13.08 4.61 -53.06 -0.24 -13.32 16 18 C 0.59 12.12 7.78 -12.90 -0.10 12.02 16 19 O -0.53 -12.85 16.43 5.17 0.08 -12.76 16 20 C -0.27 -4.76 6.17 -104.65 -0.65 -5.40 16 21 C 0.13 1.84 11.44 -17.12 -0.20 1.64 16 22 N -0.31 -4.46 12.58 30.77 0.39 -4.08 16 23 N -0.31 -4.18 3.86 -11.97 -0.05 -4.23 16 24 C 0.16 1.38 11.29 -16.45 -0.19 1.19 16 25 C -0.23 -1.45 10.05 -39.82 -0.40 -1.85 16 26 C 0.18 1.69 11.28 -17.05 -0.19 1.50 16 27 N -0.43 -6.81 10.26 -12.00 -0.12 -6.93 16 28 C 0.31 5.18 7.74 -155.83 -1.21 3.97 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.66 6.42 -51.93 -0.33 0.33 16 32 H 0.06 1.13 7.57 -51.93 -0.39 0.74 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.39 7.76 -51.93 -0.40 -0.01 16 36 H 0.02 0.45 7.84 -51.93 -0.41 0.04 16 37 H 0.25 7.54 8.31 -40.82 -0.34 7.21 16 38 H 0.02 0.52 7.80 -51.93 -0.41 0.12 16 39 H 0.11 3.34 5.88 -51.93 -0.31 3.04 16 40 H 0.39 6.37 5.95 -40.82 -0.24 6.13 16 41 H 0.20 2.18 7.46 -52.49 -0.39 1.79 16 42 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.17 0.32 8.06 -52.49 -0.42 -0.10 16 44 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -38.37 362.30 -8.19 -46.57 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.78 Total: 4.23 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -2.89 Total: 10.54 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -0.04 Total: -71.64 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.37 -8.19 -46.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974905294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.303 kcal (2) G-P(sol) polarization free energy of solvation -38.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds