Wall clock time and date at job start Tue Mar 31 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 110.77724 * 2 1 4 4 C 1.54429 * 110.72544 * 236.70866 * 2 1 3 5 5 N 1.47025 * 107.27983 * 263.84654 * 4 2 1 6 6 C 1.36929 * 125.64805 * 181.09876 * 5 4 2 7 7 H 1.08001 * 120.00036 * 173.84845 * 6 5 4 8 8 C 1.38814 * 120.00356 * 353.84415 * 6 5 4 9 9 N 1.31623 * 119.99505 * 6.83229 * 8 6 5 10 10 Si 1.86797 * 120.00228 * 186.82924 * 8 6 5 11 11 H 1.48507 * 109.46660 * 94.98798 * 10 8 6 12 12 H 1.48501 * 109.47258 * 214.98529 * 10 8 6 13 13 H 1.48493 * 109.47429 * 334.98573 * 10 8 6 14 14 C 1.47422 * 108.70260 * 1.05901 * 5 4 2 15 15 C 1.54917 * 104.83430 * 335.87312 * 14 5 4 16 16 H 1.09002 * 111.00534 * 155.12004 * 15 14 5 17 17 N 1.46496 * 111.00111 * 278.93611 * 15 14 5 18 18 C 1.34773 * 120.00003 * 270.41366 * 17 15 14 19 19 O 1.21566 * 120.00061 * 359.73000 * 18 17 15 20 20 C 1.47807 * 120.00264 * 180.02562 * 18 17 15 21 21 N 1.32301 * 120.58665 * 359.72567 * 20 18 17 22 22 C 1.32688 * 121.18487 * 179.97438 * 21 20 18 23 23 C 1.35484 * 122.11198 * 0.02562 * 22 21 20 24 24 N 1.36215 * 120.52712 * 359.97438 * 23 22 21 25 25 C 1.36160 * 133.92742 * 180.02562 * 24 23 22 26 26 C 1.35351 * 107.13961 * 179.29357 * 25 24 23 27 27 N 1.33562 * 108.61009 * 0.60194 * 26 25 24 28 28 C 1.31851 * 109.14403 * 359.46155 * 27 26 25 29 29 H 1.08993 * 109.47062 * 296.76168 * 1 2 3 30 30 H 1.08996 * 109.46872 * 56.76210 * 1 2 3 31 31 H 1.08998 * 109.46943 * 176.75613 * 1 2 3 32 32 H 1.09001 * 109.46828 * 183.23819 * 3 2 1 33 33 H 1.09000 * 109.47145 * 303.23574 * 3 2 1 34 34 H 1.08993 * 109.46800 * 63.24052 * 3 2 1 35 35 H 1.08999 * 109.87528 * 144.42440 * 4 2 1 36 36 H 1.09001 * 110.00494 * 23.33783 * 4 2 1 37 37 H 0.97006 * 119.99449 * 180.02562 * 9 8 6 38 38 H 1.09000 * 110.36997 * 217.03265 * 14 5 4 39 39 H 1.09002 * 110.36692 * 94.70806 * 14 5 4 40 40 H 0.97000 * 120.00600 * 90.42070 * 17 15 14 41 41 H 1.07995 * 118.94155 * 179.97438 * 22 21 20 42 42 H 1.08006 * 119.73491 * 179.97438 * 23 22 21 43 43 H 1.08003 * 126.43100 * 359.94502 * 25 24 23 44 44 H 1.08007 * 125.69292 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0765 -0.7928 -1.2073 5 7 2.3718 -2.1545 -0.7381 6 6 2.8948 -3.1652 -1.4997 7 1 3.1687 -4.1026 -1.0385 8 6 3.0727 -2.9851 -2.8645 9 7 2.8667 -1.8026 -3.4046 10 14 3.6047 -4.4208 -3.9346 11 1 2.4067 -5.0616 -4.5343 12 1 4.4962 -3.9289 -5.0155 13 1 4.3338 -5.4132 -3.1049 14 6 2.0126 -2.2512 0.6884 15 6 2.0790 -0.7954 1.2138 16 1 1.4400 -0.6657 2.0872 17 7 3.4595 -0.4082 1.5144 18 6 3.9682 -0.6262 2.7433 19 8 3.2798 -1.1397 3.6037 20 6 5.3608 -0.2351 3.0468 21 7 6.1202 0.3250 2.1194 22 6 7.3717 0.6812 2.3790 23 6 7.9364 0.4928 3.5960 24 7 7.2250 -0.0773 4.6081 25 6 7.5080 -0.3886 5.9031 26 6 6.3890 -0.9321 6.4364 27 7 5.4427 -0.9693 5.4947 28 6 5.9220 -0.4546 4.3794 29 1 -0.3633 0.4627 0.9175 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0260 -0.0582 32 1 3.1610 1.4062 -0.0581 33 1 1.6751 1.9701 -0.8596 34 1 1.7691 1.9343 0.9176 35 1 2.9875 -0.3226 -1.5777 36 1 1.3289 -0.8277 -1.9998 37 1 2.9907 -1.6768 -4.3584 38 1 2.7291 -2.8788 1.2184 39 1 1.0038 -2.6489 0.7994 40 1 4.0076 0.0052 0.8291 41 1 7.9592 1.1352 1.5948 42 1 8.9588 0.7970 3.7651 43 1 8.4457 -0.2224 6.4125 44 1 6.2824 -1.2861 7.4513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975044351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:17 Heat of formation + Delta-G solvation = 107.864225 kcal Electronic energy + Delta-G solvation = -28540.168559 eV Core-core repulsion = 24688.452450 eV Total energy + Delta-G solvation = -3851.716109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.19718 -39.84054 -38.62049 -37.72515 -34.47912 -33.78429 -32.84763 -31.05464 -30.73324 -29.74155 -27.79110 -26.78765 -25.71087 -25.44928 -23.50041 -23.40201 -22.23661 -20.95108 -19.92050 -18.95499 -18.63292 -17.87724 -16.84466 -16.43605 -16.22920 -15.87440 -15.70022 -14.86150 -14.60558 -14.45761 -14.29466 -13.99701 -13.71802 -13.46972 -13.35663 -13.03363 -12.90057 -12.63219 -12.21266 -11.85912 -11.71160 -11.65240 -11.34847 -11.09277 -10.83381 -10.73060 -10.50783 -10.34126 -10.24152 -10.16052 -9.98028 -9.77111 -9.67438 -9.44813 -9.22508 -8.66300 -8.50668 -8.38565 -6.75240 -5.68479 -2.99157 -0.12328 0.96722 2.05631 2.55808 2.77157 3.11918 3.42882 3.48805 3.49991 3.64952 3.75314 3.89917 4.06200 4.36847 4.54210 4.80092 4.93029 5.03524 5.08384 5.12256 5.38330 5.48085 5.50596 5.60254 5.69555 5.82254 5.92940 5.97634 6.10412 6.20928 6.24920 6.29700 6.41526 6.45441 6.50928 6.58804 6.69959 6.77763 6.82489 7.06692 7.23453 7.58197 7.60052 7.66337 7.85614 7.92369 8.29739 8.48722 9.26806 9.86796 10.53642 11.43678 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.003672 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.068185 B = 7623.284684 C = 8445.850093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C -0.128 4.128 4 C 0.188 3.812 5 N -0.603 5.603 6 C -0.223 4.223 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.920 5.920 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.126 3.874 15 C 0.137 3.863 16 H 0.092 0.908 17 N -0.678 5.678 18 C 0.568 3.432 19 O -0.506 6.506 20 C 0.190 3.810 21 N -0.424 5.424 22 C 0.036 3.964 23 C 0.026 3.974 24 N -0.356 5.356 25 C -0.085 4.085 26 C 0.030 3.970 27 N -0.433 5.433 28 C 0.192 3.808 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.251 0.749 38 H 0.042 0.958 39 H 0.031 0.969 40 H 0.412 0.588 41 H 0.186 0.814 42 H 0.175 0.825 43 H 0.189 0.811 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 9.654 14.899 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 C -0.186 4.186 4 C 0.064 3.936 5 N -0.329 5.329 6 C -0.351 4.351 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.568 5.568 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.208 1.208 14 C -0.001 4.001 15 C 0.031 3.969 16 H 0.110 0.890 17 N -0.329 5.329 18 C 0.349 3.651 19 O -0.379 6.379 20 C 0.024 3.976 21 N -0.139 5.139 22 C -0.105 4.105 23 C -0.099 4.099 24 N -0.031 5.031 25 C -0.218 4.218 26 C -0.122 4.122 27 N -0.152 5.152 28 C -0.056 4.056 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.250 0.750 41 H 0.203 0.797 42 H 0.192 0.808 43 H 0.207 0.793 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.163 9.156 14.527 19.014 hybrid contribution 2.159 -0.392 -0.253 2.208 sum 10.322 8.765 14.275 19.675 Atomic orbital electron populations 1.21671 0.93756 1.02153 1.00741 1.22219 0.95909 0.95311 0.96987 1.21671 1.00648 0.95336 1.00944 1.21314 0.98666 0.83315 0.90340 1.44438 1.74393 1.09237 1.04825 1.19055 1.34130 0.92889 0.89075 0.90610 1.24763 1.02026 0.96929 0.96552 1.69963 1.55589 1.20306 1.10937 0.86156 0.77832 0.81767 0.80388 1.21697 1.21882 1.20781 1.21949 0.97944 0.93358 0.86885 1.22295 0.81013 0.96315 0.97239 0.88973 1.45696 1.14826 1.60481 1.11895 1.17184 0.83961 0.80383 0.83551 1.90875 1.58398 1.42102 1.46498 1.22397 0.95591 0.95048 0.84600 1.68168 1.05722 1.08281 1.31761 1.22161 0.91887 1.01294 0.95139 1.22743 0.99540 0.99627 0.88030 1.42896 1.12355 1.37813 1.09997 1.22774 1.03658 1.12386 0.83018 1.22918 0.88553 1.00748 1.00009 1.70692 1.29272 1.17750 0.97525 1.22554 0.82411 1.03905 0.96703 0.93514 0.92407 0.92128 0.92756 0.92428 0.93391 0.93816 0.93245 0.93876 0.93965 0.95143 0.75011 0.79747 0.80769 0.79350 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.41 37.16 0.31 -1.71 16 2 C -0.10 -1.85 0.81 -152.61 -0.12 -1.97 16 3 C -0.13 -1.97 8.08 37.16 0.30 -1.67 16 4 C 0.19 4.37 4.55 -3.01 -0.01 4.36 16 5 N -0.60 -15.22 3.39 -170.00 -0.58 -15.79 16 6 C -0.22 -6.24 10.26 -15.06 -0.15 -6.40 16 7 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 8 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 9 N -0.92 -26.53 10.36 55.49 0.57 -25.96 16 10 Si 0.91 22.25 29.56 -169.99 -5.02 17.23 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.13 2.75 6.62 -2.53 -0.02 2.73 16 15 C 0.14 2.54 2.61 -65.78 -0.17 2.37 16 16 H 0.09 1.67 7.53 -51.93 -0.39 1.28 16 17 N -0.68 -12.19 4.61 -52.68 -0.24 -12.43 16 18 C 0.57 10.51 7.81 -12.35 -0.10 10.41 16 19 O -0.51 -10.64 15.92 5.31 0.08 -10.55 16 20 C 0.19 3.08 6.97 -80.53 -0.56 2.52 16 21 N -0.42 -5.93 9.67 -8.68 -0.08 -6.01 16 22 C 0.04 0.35 11.01 -18.17 -0.20 0.15 16 23 C 0.03 0.22 11.00 -16.59 -0.18 0.03 16 24 N -0.36 -4.06 2.95 -61.12 -0.18 -4.24 16 25 C -0.08 -0.77 11.80 -16.66 -0.20 -0.97 16 26 C 0.03 0.34 11.83 -17.83 -0.21 0.13 16 27 N -0.43 -7.01 10.74 -11.28 -0.12 -7.13 16 28 C 0.19 2.98 7.66 -153.99 -1.18 1.80 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.05 7.57 -51.93 -0.39 0.65 16 32 H 0.05 0.84 6.42 -51.93 -0.33 0.51 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 1.12 7.17 -51.93 -0.37 0.74 16 36 H 0.05 1.29 7.07 -51.93 -0.37 0.92 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.03 0.66 7.80 -51.93 -0.41 0.25 16 40 H 0.41 7.33 6.40 -40.82 -0.26 7.06 16 41 H 0.19 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.18 0.64 8.06 -52.48 -0.42 0.21 16 43 H 0.19 0.85 8.06 -52.48 -0.42 0.42 16 44 H 0.19 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -35.26 362.49 -8.57 -43.83 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.88 Total: 4.09 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -2.59 Total: 11.50 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -0.63 Total: -71.56 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.26 -8.57 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975044351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.698 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds