Wall clock time and date at job start Tue Mar 31 2020 05:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 110.78000 * 2 1 4 4 C 1.54324 * 110.72260 * 236.75623 * 2 1 3 5 5 N 1.47016 * 107.27388 * 219.44383 * 4 2 1 6 6 C 1.36939 * 125.64981 * 178.98073 * 5 4 2 7 7 H 1.07994 * 119.99789 * 359.97438 * 6 5 4 8 8 C 1.38806 * 119.99944 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00308 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99860 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47142 * 89.99955 * 10 8 6 12 12 H 1.48501 * 109.47559 * 209.99569 * 10 8 6 13 13 H 1.48496 * 109.47398 * 330.00015 * 10 8 6 14 14 C 1.47526 * 108.71480 * 358.94592 * 5 4 2 15 15 C 1.54913 * 104.78418 * 24.11767 * 14 5 4 16 16 H 1.09001 * 111.00357 * 204.89839 * 15 14 5 17 17 N 1.46498 * 111.00146 * 81.09008 * 15 14 5 18 18 C 1.34779 * 120.00196 * 89.58525 * 17 15 14 19 19 O 1.21754 * 119.99649 * 359.97438 * 18 17 15 20 20 C 1.46190 * 120.00107 * 179.97438 * 18 17 15 21 21 C 1.38721 * 126.76328 * 180.02562 * 20 18 17 22 22 N 1.32281 * 108.17596 * 179.97438 * 21 20 18 23 23 C 1.33130 * 109.71596 * 0.02562 * 22 21 20 24 24 C 1.40626 * 132.28974 * 180.02562 * 23 22 21 25 25 C 1.36315 * 119.22509 * 179.97438 * 24 23 22 26 26 C 1.39875 * 120.11923 * 0.02562 * 25 24 23 27 27 N 1.30794 * 120.77888 * 359.97438 * 26 25 24 28 28 N 1.36650 * 108.62955 * 359.97438 * 23 22 21 29 29 H 1.08998 * 109.46840 * 296.76192 * 1 2 3 30 30 H 1.08994 * 109.46642 * 56.76395 * 1 2 3 31 31 H 1.09002 * 109.47095 * 176.76138 * 1 2 3 32 32 H 1.08996 * 109.47218 * 183.23766 * 3 2 1 33 33 H 1.08995 * 109.47509 * 303.23604 * 3 2 1 34 34 H 1.09004 * 109.47359 * 63.23341 * 3 2 1 35 35 H 1.08998 * 109.88208 * 338.86792 * 4 2 1 36 36 H 1.09008 * 109.87517 * 100.02697 * 4 2 1 37 37 H 0.97000 * 120.00100 * 179.97438 * 9 8 6 38 38 H 1.09002 * 110.37085 * 265.30648 * 14 5 4 39 39 H 1.09001 * 110.41173 * 142.95477 * 14 5 4 40 40 H 0.96999 * 119.99537 * 269.58301 * 17 15 14 41 41 H 1.08000 * 125.91188 * 359.95501 * 21 20 18 42 42 H 1.07998 * 120.38959 * 359.97438 * 24 23 22 43 43 H 1.07999 * 119.93804 * 179.72275 * 25 24 23 44 44 H 1.07999 * 119.60756 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7913 -1.2072 5 7 3.2446 -1.5507 -0.7389 6 6 4.0044 -2.3969 -1.5016 7 1 3.7613 -2.5509 -2.5425 8 6 5.0865 -3.0576 -0.9366 9 7 5.3826 -2.8705 0.3321 10 14 6.1226 -4.2125 -1.9769 11 1 7.2326 -3.4516 -2.6050 12 1 6.6828 -5.2856 -1.1167 13 1 5.2764 -4.8183 -3.0361 14 6 3.4636 -1.2498 0.6886 15 6 2.0789 -0.7954 1.2139 16 1 2.1843 -0.1520 2.0874 17 7 1.2271 -1.9488 1.5145 18 6 1.2505 -2.5017 2.7435 19 8 1.9799 -2.0428 3.6036 20 6 0.4001 -3.6522 3.0437 21 6 0.3122 -4.3268 4.2526 22 7 -0.5675 -5.3052 4.1162 23 6 -1.0558 -5.3007 2.8778 24 6 -2.0014 -6.1159 2.2305 25 6 -2.3116 -5.8687 0.9263 26 6 -1.6928 -4.8153 0.2452 27 7 -0.8130 -4.0556 0.8448 28 7 -0.4718 -4.2799 2.1820 29 1 -0.3633 0.4627 0.9176 30 1 -0.3632 0.5632 -0.8595 31 1 -0.3633 -1.0260 -0.0581 32 1 3.1610 1.4061 -0.0580 33 1 1.6752 1.9700 -0.8595 34 1 1.7691 1.9344 0.9176 35 1 1.3131 -1.4759 -1.5775 36 1 2.3742 -0.1024 -1.9977 37 1 6.1386 -3.3325 0.7270 38 1 4.1933 -0.4477 0.7997 39 1 3.7963 -2.1423 1.2186 40 1 0.6463 -2.3145 0.8291 41 1 0.8664 -4.0937 5.1498 42 1 -2.4763 -6.9283 2.7604 43 1 -3.0329 -6.4903 0.4167 44 1 -1.9444 -4.6271 -0.7881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977271071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:47 Heat of formation + Delta-G solvation = 119.129066 kcal Electronic energy + Delta-G solvation = -29125.646395 eV Core-core repulsion = 25274.418766 eV Total energy + Delta-G solvation = -3851.227629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62811 -39.55539 -38.31780 -37.55543 -34.09083 -33.70076 -32.86068 -31.36991 -30.68427 -29.78432 -28.05002 -26.80205 -25.60135 -25.01585 -24.07141 -23.25744 -22.06345 -20.65555 -19.95210 -18.97484 -18.20014 -17.69305 -16.70678 -16.45017 -16.29452 -16.04862 -15.66867 -14.66616 -14.28618 -14.01512 -14.01243 -13.88310 -13.73763 -13.65196 -13.17239 -13.16409 -12.81613 -12.67131 -12.16489 -11.90697 -11.76189 -11.36635 -11.34088 -11.25478 -11.15452 -10.98043 -10.77855 -10.40210 -10.23967 -10.18037 -9.94678 -9.80990 -9.67646 -9.61595 -9.61113 -8.67114 -8.47983 -8.19677 -6.78860 -5.60887 -3.03804 0.13667 0.75831 1.60523 2.25109 3.10034 3.39897 3.44067 3.47234 3.49850 3.66612 3.83775 3.91591 4.24432 4.49759 4.57683 4.95597 5.00868 5.09250 5.19287 5.26843 5.31805 5.36954 5.49310 5.54297 5.55331 5.64803 5.82189 5.89914 6.01280 6.05275 6.11839 6.19978 6.29179 6.34309 6.41674 6.50971 6.62634 6.71000 6.77963 7.00561 7.25957 7.47215 7.53016 7.63613 7.90091 8.06496 8.41145 8.65465 9.23858 9.85620 10.50108 11.41865 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010266 B = 0.004813 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.775444 B = 5815.666968 C = 6644.364344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.128 4.128 4 C 0.144 3.856 5 N -0.600 5.600 6 C -0.224 4.224 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.147 3.853 15 C 0.122 3.878 16 H 0.089 0.911 17 N -0.690 5.690 18 C 0.592 3.408 19 O -0.532 6.532 20 C -0.045 4.045 21 C 0.101 3.899 22 N -0.466 5.466 23 C 0.173 3.827 24 C -0.003 4.003 25 C -0.177 4.177 26 C 0.137 3.863 27 N -0.260 5.260 28 N -0.251 5.251 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.020 0.980 36 H 0.024 0.976 37 H 0.252 0.748 38 H 0.023 0.977 39 H 0.113 0.887 40 H 0.405 0.595 41 H 0.203 0.797 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.730 -1.976 0.932 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.185 4.185 4 C 0.018 3.982 5 N -0.326 5.326 6 C -0.352 4.352 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.021 3.979 15 C 0.016 3.984 16 H 0.107 0.893 17 N -0.341 5.341 18 C 0.376 3.624 19 O -0.409 6.409 20 C -0.165 4.165 21 C -0.060 4.060 22 N -0.187 5.187 23 C -0.071 4.071 24 C -0.031 4.031 25 C -0.203 4.203 26 C -0.055 4.055 27 N -0.070 5.070 28 N -0.023 5.023 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.130 0.870 40 H 0.243 0.757 41 H 0.220 0.780 42 H 0.181 0.819 43 H 0.177 0.823 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -17.622 -1.465 1.847 17.779 hybrid contribution 0.104 -1.009 -1.449 1.769 sum -17.518 -2.474 0.398 17.697 Atomic orbital electron populations 1.21721 0.94719 1.01277 1.01179 1.21842 0.94808 0.95784 0.96394 1.21682 1.01958 0.93987 1.00901 1.21394 0.90254 0.92915 0.93615 1.44467 1.30588 1.50274 1.07318 1.19006 1.06350 1.17101 0.92784 0.90631 1.24790 0.98810 1.00611 0.96321 1.69801 1.29897 1.46005 1.10732 0.86131 0.80371 0.80408 0.78901 1.21585 1.21745 1.20863 1.22328 0.89056 1.01404 0.85088 1.22598 0.93371 0.85976 0.96434 0.89327 1.45819 1.43679 1.32480 1.12090 1.16463 0.81351 0.81233 0.83321 1.90856 1.40591 1.62284 1.47171 1.21716 1.01294 1.02837 0.90663 1.23183 0.95936 0.90516 0.96393 1.70459 1.12673 1.21796 1.13742 1.21240 1.01554 0.94007 0.90341 1.20626 0.91979 0.96638 0.93844 1.21542 1.03630 1.00225 0.94866 1.24187 0.89589 0.90709 1.01046 1.75628 1.17069 1.24924 0.89422 1.46915 1.27047 1.21515 1.06833 0.92942 0.92687 0.92897 0.91666 0.92681 0.93022 0.96198 0.95815 0.93673 0.95941 0.86972 0.75722 0.78024 0.81925 0.82345 0.78066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.07 37.16 0.30 -1.56 16 2 C -0.09 -1.51 0.80 -152.67 -0.12 -1.63 16 3 C -0.13 -1.97 8.41 37.16 0.31 -1.66 16 4 C 0.14 2.97 6.41 -3.07 -0.02 2.95 16 5 N -0.60 -15.32 3.40 -169.99 -0.58 -15.89 16 6 C -0.22 -6.27 10.27 -15.06 -0.15 -6.43 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.64 10.09 55.49 0.56 -27.08 16 10 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.15 3.71 5.28 -2.47 -0.01 3.69 16 15 C 0.12 2.48 2.61 -65.78 -0.17 2.30 16 16 H 0.09 1.80 7.53 -51.93 -0.39 1.41 16 17 N -0.69 -13.61 4.62 -53.18 -0.25 -13.86 16 18 C 0.59 12.05 7.77 -13.07 -0.10 11.95 16 19 O -0.53 -12.04 16.60 5.14 0.09 -11.95 16 20 C -0.05 -0.80 7.10 -81.85 -0.58 -1.39 16 21 C 0.10 1.61 11.69 -17.18 -0.20 1.41 16 22 N -0.47 -7.17 11.25 -12.24 -0.14 -7.30 16 23 C 0.17 2.42 7.85 -156.07 -1.23 1.20 16 24 C 0.00 -0.03 10.11 -39.37 -0.40 -0.43 16 25 C -0.18 -1.18 10.03 -39.66 -0.40 -1.58 16 26 C 0.14 1.18 11.30 -17.38 -0.20 0.98 16 27 N -0.26 -3.56 10.04 30.62 0.31 -3.25 16 28 N -0.25 -3.96 4.05 -8.68 -0.04 -4.00 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.76 6.42 -51.93 -0.33 0.43 16 32 H 0.06 1.13 7.57 -51.93 -0.39 0.74 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.41 7.76 -51.93 -0.40 0.00 16 36 H 0.02 0.49 7.84 -51.92 -0.41 0.08 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.02 0.61 7.80 -51.93 -0.41 0.20 16 39 H 0.11 3.31 5.88 -51.93 -0.31 3.01 16 40 H 0.41 7.59 5.02 -40.82 -0.20 7.39 16 41 H 0.20 2.74 8.06 -52.49 -0.42 2.32 16 42 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.16 0.40 8.06 -52.49 -0.42 -0.02 16 44 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -36.02 360.87 -8.47 -44.49 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.77 Total: 6.47 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -3.07 Total: 9.44 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -0.13 Total: -71.39 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.02 -8.47 -44.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977271071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.618 kcal (2) G-P(sol) polarization free energy of solvation -36.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds