Wall clock time and date at job start Tue Mar 31 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.78252 * 2 1 4 4 C 1.54431 * 110.72700 * 236.70046 * 2 1 3 5 5 N 1.47017 * 107.28234 * 263.84687 * 4 2 1 6 6 C 1.36939 * 125.64636 * 181.09264 * 5 4 2 7 7 H 1.08001 * 120.00217 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00209 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99443 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00424 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47229 * 89.99490 * 10 8 6 12 12 H 1.48490 * 109.47130 * 210.00316 * 10 8 6 13 13 H 1.48504 * 109.46832 * 329.99717 * 10 8 6 14 14 C 1.47420 * 108.70535 * 1.06572 * 5 4 2 15 15 C 1.54906 * 104.83258 * 335.86543 * 14 5 4 16 16 H 1.08996 * 111.00758 * 155.12450 * 15 14 5 17 17 N 1.46502 * 111.00551 * 278.93711 * 15 14 5 18 18 C 1.34767 * 120.00212 * 270.41566 * 17 15 14 19 19 O 1.21557 * 119.99907 * 0.02562 * 18 17 15 20 20 C 1.47878 * 120.00180 * 179.97438 * 18 17 15 21 21 C 1.39902 * 125.69349 * 180.02562 * 20 18 17 22 22 C 1.38583 * 107.59024 * 179.97438 * 21 20 18 23 23 N 1.34114 * 132.33503 * 180.02562 * 22 21 20 24 24 C 1.31137 * 120.84134 * 179.97438 * 23 22 21 25 25 C 1.40352 * 120.29252 * 0.02562 * 24 23 22 26 26 C 1.35457 * 119.46283 * 0.20699 * 25 24 23 27 27 N 1.36668 * 119.14417 * 359.55586 * 26 25 24 28 28 N 1.32370 * 125.69301 * 359.97438 * 20 18 17 29 29 H 1.08997 * 109.47501 * 296.76253 * 1 2 3 30 30 H 1.09007 * 109.46985 * 56.76517 * 1 2 3 31 31 H 1.09007 * 109.47356 * 176.75723 * 1 2 3 32 32 H 1.09001 * 109.47204 * 183.23237 * 3 2 1 33 33 H 1.08996 * 109.47236 * 303.23894 * 3 2 1 34 34 H 1.09005 * 109.46743 * 63.23827 * 3 2 1 35 35 H 1.09003 * 109.87084 * 144.42877 * 4 2 1 36 36 H 1.09001 * 110.00325 * 23.34553 * 4 2 1 37 37 H 0.97005 * 119.99957 * 180.02562 * 9 8 6 38 38 H 1.09001 * 110.36500 * 217.03064 * 14 5 4 39 39 H 1.09002 * 110.37105 * 94.70428 * 14 5 4 40 40 H 0.97004 * 119.99353 * 90.42003 * 17 15 14 41 41 H 1.07997 * 126.20624 * 359.96324 * 21 20 18 42 42 H 1.07995 * 119.85847 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.26467 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.42733 * 179.71005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0765 -0.7930 -1.2072 5 7 2.3718 -2.1546 -0.7379 6 6 2.8947 -3.1654 -1.4995 7 1 3.1254 -2.9933 -2.5404 8 6 3.1282 -4.4113 -0.9336 9 7 2.8465 -4.6211 0.3348 10 14 3.8421 -5.7900 -1.9723 11 1 5.3246 -5.7522 -1.8938 12 1 3.3526 -7.0967 -1.4645 13 1 3.4167 -5.6170 -3.3845 14 6 2.0124 -2.2513 0.6886 15 6 2.0789 -0.7955 1.2139 16 1 1.4399 -0.6657 2.0873 17 7 3.4594 -0.4083 1.5146 18 6 3.9680 -0.6263 2.7435 19 8 3.2813 -1.1446 3.6022 20 6 5.3616 -0.2359 3.0469 21 6 6.0079 -0.4063 4.2759 22 6 7.2961 0.0872 4.1437 23 7 8.3241 0.1698 5.0011 24 6 9.4692 0.6899 4.6296 25 6 9.6372 1.1712 3.3219 26 6 8.6053 1.0980 2.4474 27 7 7.4235 0.5472 2.8569 28 7 6.2062 0.3322 2.2006 29 1 -0.3634 0.4627 0.9175 30 1 -0.3633 0.5633 -0.8596 31 1 -0.3634 -1.0261 -0.0581 32 1 3.1610 1.4061 -0.0579 33 1 1.6751 1.9700 -0.8595 34 1 1.7691 1.9343 0.9177 35 1 2.9875 -0.3228 -1.5776 36 1 1.3289 -0.8279 -1.9997 37 1 3.0100 -5.4916 0.7304 38 1 2.7289 -2.8788 1.2186 39 1 1.0036 -2.6489 0.7996 40 1 4.0074 0.0051 0.8292 41 1 5.5803 -0.8430 5.1664 42 1 10.2867 0.7481 5.3329 43 1 10.5803 1.5998 3.0166 44 1 8.7159 1.4680 1.4387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977380183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:38 Heat of formation + Delta-G solvation = 118.849958 kcal Electronic energy + Delta-G solvation = -28313.145271 eV Core-core repulsion = 24461.905539 eV Total energy + Delta-G solvation = -3851.239732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.42982 -39.74666 -38.35885 -37.44289 -34.21970 -33.83221 -33.08373 -31.30713 -30.67220 -29.25227 -28.21289 -26.91826 -25.61803 -25.27784 -24.13436 -23.30135 -22.26997 -20.41650 -19.77739 -18.83573 -18.27335 -17.79682 -16.79384 -16.67916 -16.24674 -15.82586 -15.56775 -14.70267 -14.67134 -14.31446 -14.00878 -13.78636 -13.73276 -13.52409 -13.21502 -13.16419 -12.76444 -12.62435 -12.17041 -11.90174 -11.73986 -11.44633 -11.42819 -11.26261 -11.14626 -10.98726 -10.75497 -10.41059 -10.20947 -10.13657 -9.96887 -9.82968 -9.71780 -9.68764 -9.66066 -8.66427 -8.39276 -8.10626 -6.78444 -5.60257 -3.03075 0.27191 0.57093 1.79001 1.89153 3.16618 3.29920 3.41581 3.46142 3.48895 3.63626 3.71687 3.98599 4.12141 4.51133 4.59649 4.77467 4.98928 5.05475 5.19296 5.26520 5.29932 5.32837 5.55126 5.59684 5.65317 5.78589 5.81485 5.90903 6.04987 6.11359 6.13493 6.19506 6.27522 6.30085 6.41574 6.51504 6.61876 6.70830 6.74207 6.96884 7.09868 7.37155 7.50054 7.64735 7.87996 7.99456 8.41517 8.55950 9.24836 9.86445 10.50425 11.42628 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011077 B = 0.003875 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.181767 B = 7223.640267 C = 8532.897196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.912 3.088 11 H -0.290 1.290 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.146 3.854 15 C 0.121 3.879 16 H 0.091 0.909 17 N -0.681 5.681 18 C 0.596 3.404 19 O -0.520 6.520 20 C 0.086 3.914 21 C -0.198 4.198 22 C 0.244 3.756 23 N -0.456 5.456 24 C 0.175 3.825 25 C -0.227 4.227 26 C 0.165 3.835 27 N -0.308 5.308 28 N -0.274 5.274 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.021 0.979 36 H 0.025 0.975 37 H 0.252 0.748 38 H 0.114 0.886 39 H 0.024 0.976 40 H 0.404 0.596 41 H 0.173 0.827 42 H 0.180 0.820 43 H 0.168 0.832 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.807 16.254 5.202 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.218 1.218 12 H -0.216 1.216 13 H -0.208 1.208 14 C 0.020 3.980 15 C 0.016 3.984 16 H 0.109 0.891 17 N -0.331 5.331 18 C 0.377 3.623 19 O -0.394 6.394 20 C -0.074 4.074 21 C -0.229 4.229 22 C 0.018 3.982 23 N -0.166 5.166 24 C -0.011 4.011 25 C -0.251 4.251 26 C 0.031 3.969 27 N -0.081 5.081 28 N -0.104 5.104 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.131 0.869 39 H 0.042 0.958 40 H 0.240 0.760 41 H 0.191 0.809 42 H 0.197 0.803 43 H 0.185 0.815 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.974 15.637 5.412 19.321 hybrid contribution 0.935 -0.557 -1.039 1.504 sum 10.909 15.081 4.373 19.119 Atomic orbital electron populations 1.21685 0.93375 1.02560 1.00940 1.21860 0.96086 0.94560 0.96248 1.21728 1.00522 0.95396 1.01319 1.21433 0.96492 0.86771 0.93635 1.44447 1.74200 1.06706 1.07329 1.19021 1.34200 0.89214 0.92875 0.90582 1.24783 1.01704 0.97616 0.96339 1.69794 1.53529 1.22378 1.10780 0.86120 0.78688 0.81834 0.79118 1.21786 1.21640 1.20774 1.22325 1.00284 0.90206 0.85168 1.22652 0.80603 0.98511 0.96609 0.89131 1.45686 1.15028 1.60657 1.11692 1.16739 0.83029 0.79270 0.83242 1.90813 1.58636 1.42833 1.47158 1.22332 0.95360 0.97143 0.92537 1.21013 0.90303 1.11434 1.00148 1.20523 0.95819 1.00059 0.81756 1.68241 0.99312 1.16663 1.32407 1.23412 0.94144 0.89068 0.94499 1.21827 1.00373 1.07818 0.95111 1.22093 0.81355 0.92142 1.01357 1.47188 1.10326 1.39600 1.11036 1.78175 0.88651 1.25731 1.17827 0.92990 0.92658 0.91664 0.92861 0.92652 0.92784 0.96087 0.95754 0.93667 0.86880 0.95840 0.76029 0.80945 0.80306 0.81503 0.80258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.41 37.15 0.31 -1.63 16 2 C -0.09 -1.46 0.81 -152.62 -0.12 -1.58 16 3 C -0.13 -1.82 8.08 37.16 0.30 -1.52 16 4 C 0.14 2.90 6.41 -3.01 -0.02 2.88 16 5 N -0.60 -15.21 3.39 -170.01 -0.58 -15.78 16 6 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 7 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.50 10.09 55.49 0.56 -26.94 16 10 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.15 3.62 5.27 -2.53 -0.01 3.61 16 15 C 0.12 2.39 2.61 -65.78 -0.17 2.22 16 16 H 0.09 1.78 7.53 -51.93 -0.39 1.38 16 17 N -0.68 -12.92 4.62 -52.66 -0.24 -13.16 16 18 C 0.60 11.84 7.83 -12.32 -0.10 11.74 16 19 O -0.52 -11.65 16.57 5.32 0.09 -11.56 16 20 C 0.09 1.54 7.05 -83.07 -0.59 0.96 16 21 C -0.20 -3.28 10.65 -38.83 -0.41 -3.70 16 22 C 0.24 3.60 7.90 -155.42 -1.23 2.37 16 23 N -0.46 -5.61 10.48 -12.22 -0.13 -5.74 16 24 C 0.17 1.31 11.27 -17.05 -0.19 1.12 16 25 C -0.23 -1.33 10.05 -39.78 -0.40 -1.73 16 26 C 0.16 1.43 11.30 -16.39 -0.19 1.24 16 27 N -0.31 -4.24 3.90 -12.20 -0.05 -4.28 16 28 N -0.27 -4.49 12.34 33.23 0.41 -4.08 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.11 7.58 -51.93 -0.39 0.72 16 32 H 0.05 0.73 6.42 -51.93 -0.33 0.40 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.02 0.42 7.77 -51.93 -0.40 0.02 16 36 H 0.02 0.50 7.85 -51.93 -0.41 0.09 16 37 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.11 3.28 5.87 -51.93 -0.30 2.98 16 39 H 0.02 0.62 7.80 -51.93 -0.41 0.22 16 40 H 0.40 7.26 6.71 -40.82 -0.27 6.99 16 41 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 42 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.17 0.27 8.06 -52.49 -0.42 -0.15 16 44 H 0.18 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -35.45 364.15 -8.38 -43.83 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.84 Total: 5.51 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -3.07 Total: 9.22 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -0.03 Total: -70.00 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.45 -8.38 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977380183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.680 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds